| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1622527 = | 80 (0.910) | 11 (0.150) | 9/212 | NT | 14.5% | intergenic (+7/+59) | PP_1421/PP_1422 | sensor histidine kinase TctE/hypothetical protein |
| ? | NC_002947 | 1622577 = | 61 (0.810) | intergenic (+57/+9) | PP_1421/PP_1422 | sensor histidine kinase TctE/hypothetical protein | |||||
ACCGGCCATTGGCTGCGCTGCCGGCGTACCGCCATCTGGGGTTGCCGTTTGGCACCGAGCTGGAGGTCGATGAACTGCTGGAGGCGCGGAGCATGTTGCGCTGAGCTGTACCAGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1622689‑1622527‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaaggggcgacacaggcTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAACGGCAACCCCAGATGGCGGTACGCCGGCAGCGCAGCCAATGGCCGGTGACGCCCGCGCTGACTGATGCAGCGGGCGATCTGC > NC_002947/1622577‑1622724 ACCGGCCATTGGCTGCGCTGCCGGCGTACCGCCATCTGGGGTTGCCGTTTGGCACCGAGCTGGAGGTCGATGAACTGCTGGAGGCGCGGAGCATGTTGCGCTGAGCTGTACCAGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAG > 2:2061275/1‑150ACCGGCCATTGGCTGCGCTGCCGGCGTACCGCCATCTGGGGTTGCCGTTTGGCACCGAGCTGGAGGTCGATGAACTGCTGGAGGCGCGGAGCATGTTGCGCTGAGCTGTACCAGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAG > 2:1008083/1‑150 nCGGCCATTGGCTGCGCTGCCGGCGTACNGCCATCTGGGGTTGCCGTNTGGCACCGAGCTGGAGGTCGATGAACTGCTGGAGGCGCGGAGCATGTTGCGCTGAGCTGTACCAGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGG > 1:241186/2‑150 CGGCCATTGGGTGCGCTGCCGGCGTACCGCAATCTGGGGTTGCCGTTTGGCACCGAGCTGGAGGTCGATGAACTGCTGGAGGCGCGGAGCATGTTGCGCTGAGCTGTACCCGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGG > 2:1254531/1‑150 CGGCCATTGGCTGCGCTGCCGGCGTACCGCCATCTGGGGTTGCCGTTTGGCACCGAGCTGGAGGTCGATGAACTGCTGGAGGCGCGGAGCATGTTGCGCTGAGCTGTACCAGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGG < 2:790302/150‑1 GCCATTGGCTGCGCTGCCGGCGTACCGCCATCTGGGGTTGCCGTTTGGCACCGAGCTGGAGGTCGATGAACTGCTGGAGGCGCGGAGCATGTTGCGCTGAGCTGTACCAGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGGGC < 1:1217931/150‑1 GCCATTGGCTGCGCTGCCGGCGTACCGCCATCTGGGGTTGCCGTTTGGCACCGAGCTGGAGGTCGATGAACTGCTGGAGGCGCGGAGCATGTTGCGCTGAGCTGTACCAGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGGGC < 1:1988527/150‑1 GCCATTGGCTGCGCTGCCGGCGTACCGCCATCTGGGGTTGCCGTTTGGCACCGAGCTGGAGGTCGATGAACTGCTGGAGGCGCGGAGCATGTTGCGCTGAGCTGTACCAGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGGGC < 2:821484/150‑1 GCTGCGCTGCCGGCGTACCGCCATCTGGGGTTGCCGTTTGGCACCGAGCTGGAGGTCGATGAACTGCTGGAGGCGCGGAGCATGTTGCGCTGAGCTGTACCAGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAG < 1:611169/150‑1 CTGCGCTGCCGGCGTACCGCCATCTGGGGTTGCCGTTTGGCACCGAGCTGGAGGTCGATGAACTGCTGGAGGCGCGGAGCATGTTGCGCTGAGCTGTACCAGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGG < 1:593304/150‑1 CGCCATCTGGGGTTGCCGTTTGGCACCGAGCTGGAGGTCGATGAACTGCTGGAGGCGCGGAGCATGTTGCGCTGAGCTGTACCAGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGGGC > 2:784068/1‑125 CGCCATCTGGGGTTGCCGTTTGGCACCGAGCTGGAGGTCGATGAACTGCTGGAGGCGCGGAGCATGTTGCGCTGAGCTGTACCAGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGGGC < 2:410315/125‑1 CGCCATCTGGGGTTGCCGTTTGGCACCGAGCTGGAGGTCGATGAACTGCTGGAGGCGCGGAGCATGTTGCGCTGAGCTGTACCAGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGGGC > 1:410315/1‑125 CGCCATCTGGGGTTGCCGTTTGGCACCGAGCTGGAGGTCGATGAACTGCTGGAGGCGCGGAGCATGTTGCGCTGAGCTGTACCAGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGGGC < 1:784068/125‑1 GTTGCCGTTTGGCACCGAGCTGGAGGTCGATGAACTGCTGGAGGCGCGGAGCATGTTGCGCTGAGCTGTACCAGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGGG > 2:315440/1‑113 GTTGCCGTTTGGCACCGAGCTGGAGGTCGATGAACTGCTGGAGGCGCGGAGCATGTTGCGCTGAGCTGTACCAGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGGG < 1:315440/113‑1 GAGCATGTTGCGCTGAGCTGTACCAGCCTGTGTAGCCCCTTTCGCGGGTGAGCCCATGAAAGG < 1:121860/63‑1 GAGCATGTTGCGCTGAGCTGTACCAGCCTGTGTAGCCCCTTTCGCGGGTGAGCCCATGAAAGG > 2:121860/1‑63 CTGTACCAGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGGGC > 2:77772/1‑49 CTGTACCAGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGGGC < 1:77772/49‑1 GCCCCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTT < 1:120424/82‑1 GCCCCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTT > 2:120424/1‑82 CCCCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAACCGCTACCCCAGATGGCGGTACGCCGGCAGCGCAGCCAATGGCC > 1:1191961/1‑150 CCCCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCTGGTACAGCTCAGCGCAACATGCTCCGAGCCTCCAGAAGTTCATCGACCTCCAGCTCGGTGCCAGACCGCAACTCCAGATGGCGGGACGCCGGCAGCGCAGCCAATGGCC > 2:1875228/1‑150 CCCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCAT > 2:526176/1‑83 CCCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCAT < 1:526176/83‑1 CCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAACGGCAACCCCAGATGGCGGTACGCCGGCAGCGCAGCCAATGGCCGG > 1:957382/1‑150 CTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAACGGCAACCCCAGATGGCGGTACGCCGGCAGCGCAGCCAATGGCCGGT > 1:322456/1‑150 CTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAACGGCAACCCCAGATGGCGGTACGCCGGCAGCGCAGCCAATGGCCGGT > 1:2162069/1‑150 GCGGGTGAGTCCATGAAAGGGGCGACACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAACGGCAACCCCAGA < 2:1986264/111‑1 GCGGGTGAGTCCATGAAAGGGGCGACACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAACGGCAACCCCAGA > 1:1986264/1‑111 AAAGGGGCGACACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAACGGCAACCCCAGATGGCGGTACGCCGGCAGCGCAGCCAATGGCCGGTGACGCCCGCGCTGACTGATG < 2:957382/150‑1 AAAGGGGCGACACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAACGGCAACCCCAGATGGCGGTACGCCGGCAGCGCAGCCAATGGCCGGTGACGCCCGCGCTGACTGATG < 1:1705924/150‑1 AAAGGGGCGACACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAACGGCAACCCCAGATGGCGGTACGCCGGCAGCGCAGCCAATGGCCGGTGACGCCCGCGCTGACTGATG > 1:1198590/1‑150 AAGGGGCGACACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAACGGCAACCCCAGATGGCGGTACGCCGGCAGCGCAGCCAATGGCCGGTGACGCCCGCGCTGACTGATGC > 1:2016656/1‑150 CGACACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAACGGCAACCCCAGATGGCGGTACGCCGGCAGCGCAGCCAATGGCCGGTGACGCCCGCGCTGACTGATGCAGCGGG < 2:1988527/150‑1 ACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAACGGCAACCCCAGATGGCGGTACGCCGGCAGCGCAGCCAATGGCCGGTGACGCCCGCGCTGACTGATGCAGCG > 2:1303083/1‑144 ACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAACGGCAACCCCAGATGGCGGTACGCCGGCAGCGCAGCCAATGGCCGGTGACGCCCGCGCTGACTGATGCAGCG < 1:1303083/144‑1 AGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAACGGCAACCCCAGATGGCGGTACGCCGGCAGCGCAGCCAATGGCCGGTGACGCCCGCGCTGACTGATGCAGCGGGCGATCT > 1:1774109/1‑150 GCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAACGGCAACCCCAGATGGCGGTACGCCGGCAGCGCAGCCAATGGCCGGTGACGCCCGCGCTGACTGATGCAGCGGGCGATCTGC < 1:697006/150‑1 ACCGGCCATTGGCTGCGCTGCCGGCGTACCGCCATCTGGGGTTGCCGTTTGGCACCGAGCTGGAGGTCGATGAACTGCTGGAGGCGCGGAGCATGTTGCGCTGAGCTGTACCAGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1622689‑1622527‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaaggggcgacacaggcTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAACGGCAACCCCAGATGGCGGTACGCCGGCAGCGCAGCCAATGGCCGGTGACGCCCGCGCTGACTGATGCAGCGGGCGATCTGC > NC_002947/1622577‑1622724 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |