New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3813252	70 (0.790)	6 (0.070)	6/234	NT	8.1%	coding (286/852 nt)	PP_3369	LysR family transcriptional regulator
	?	NC_002947	= 3813257	71 (0.850)					coding (291/852 nt)	PP_3369	LysR family transcriptional regulator

CCAGCTCAAGCTGGTCGACCGACGTCCCCGCGCTTATGCCCTCACCCACGAAGGCCAACGTGTTGCGGAACTCGCCGAGCAGATGGCCATGTCCTCTTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3813098‑3813252 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggtgcCGAGAGCACCACTTCGCCTTCCACTGTCTGTTGGCCGGCGCTGGCGAAATGCTCCAGGGCAAAAGAGGACATGGCCATCTGCTCGGCGAGTTCCGCAACACGTTGGCCTTCGTGGGTGAGGGCATAAGCGCGGGGACGTCGGTCGACCA  <  NC_002947/3813257‑3813109                                                                                                                                                                                                                                                                                                                  CCAGCTCAAGCTGGTCGACCGACGTCCCCGCGCTTATGCCCTCACCCACGAAGGCCAACGTGTTGCGGAACTCGCCGAGCAGATGGCCATGTCCTCTTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGT                                                                                                                                                            >  2:807066/1‑150  CAGCTCAAGCTGGTCGACCGACGTCCCCGCGCTTATGCCCTCACCCACGAAGGCCAACGTGTTGCGGAACCCGCCGAGTATATGTCCATGTCCTCTTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTG                                                                                                                                                           <  2:2303998/150‑1   AGCTCAAGCTGGTCGACCGACGTCCCCGCGCTTATGCCCTCACCCACGAAGGCCAACGTGTTGCGGAACTCGCCGAGCAGATGGCCATGTCCTCTTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGG                                                                                                                                                          <  2:1440432/150‑1                                                ACGAAGGCCAACGTGTTGCGGAACTCGCCGAGCAGATGGCCATGTCCTCTTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCCGAGAGCACCACTT                                                                                                                                         >  1:2206325/1‑122                                                ACGAAGGCCAACGTGTTGCGGAACTCGCCGAGCAGATGGCCATGTCCTCTTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCCGAGAGCACCACTT                                                                                                                                         <  2:2206325/122‑1                                                                                                              CATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCCGAGAGCACCACTTC                                                                                                                                        <  1:1103694/61‑1                                                                                                              CATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCCGAGAGCACCACTTC                                                                                                                                        >  2:1103694/1‑61                                                                                                                                 AACAGACAGTGGAAGGCGAAGTGGTGCCGAGAGCACCAC                                                                                                                                           >  1:408180/1‑39                                                                                                                                 AACAGACAGTGGAAGGCGAAGTGGTGCCGAGAGCACCAC                                                                                                                                           <  2:408180/39‑1                                                                                                                                                     GTGGTGCCGAGAGCACCACTTCGCCTTCCACTGTCTGTTGGCCGGCGCTGGCGAAATGCTCCAGGGCAAAAGAGGACATGGCCATCTGCTCGGCGAGTTCCGCAACACGTTGGCCTTCGTGGGTGAGGGCATAAGCGCGGGGACGc            <  2:592196/146‑2                                                                                                                                                     GTGGTGCCGAGAGCACCACTTCGCCTTCCACTGTCTGTTGGCCGGCGCTGGCGAAATGCTCCAGGGCAAAAGAGGACATGGCCATCTGCTCGGCGAGTTCCGCAACACGTTGGCCTTCGTGGGGGAGGGCATAAGCGCGGGGACGc            >  1:592196/1‑145                                                                                                                                                      TGGTGCCGAGAGCACCACTTCGCCTTCCACTGTCTGTTGGCCGGCGCTGGCGAAATGCTCCAGGGCAAAAGAGGACATGGCCATCTGCTCGGCGAGTTCCGCAACACGTTGGCCTTCGTGGGTGAGGGCATAAGCGCGGGGACGTCGGTC       <  1:249016/150‑1                                                                                                                                                         TGCCGAGAGCACCACTTCGCCTTCCACTGTCTGTTGGCCGGCGCTGGCGAAATGCTCCAGGGCAAAAGAGGACATGGCCATCTGCTCGGCGAGTTCCGCAACACGTTGGCCTTCGTGGGTGAGGGCATAAGCGCGGGGACGTCGGTCGtc    <  2:1163394/150‑3                                                                                                                                                         TGCCGAGAGCACCACTTCGCCTTCCACTGTCTGTTGGCCGGCGCTGGCGAAATGCTCCAGGGCAAAAGAGGACATGGCCATCTGCTCGGCGAGTTCCGCAACACGTTGGCCTTCGTGGGTGAGGGCATAAGCGCGGGGACGTCGGTCGAC    >  1:2305592/1‑150                                                                                                                                                         TGCCGAGAGCACCACTTCGCCTTCCACTGTCTGTTGGCCGGCGCTGGCGAAATGCTCCAGGGCAAAAGAGGACATGGCCATCTGCTCGGCGAGTTCCGCAACACGTTGGCCTTCGTGGGTGAGGGCATAAGCGCGGGGACGTCGGTCGAC    >  2:1585221/1‑150                                                                                                                                                           CCGAGAGCACCACTTCGCCTTCCACTGTCTGTTGGCCGGCGCTGGCGAAATGCTCCAGGGCAAAAGAGGACATGGCCCTCTGCTCGGCGAGTTCCACAACACTTTTGCCTTCGTGGGTGAGGGCATAAGCGCGGGGACGTCGGTCGACCA  <  1:44923/150‑1                                                                                                                                                                                                                                                                                                                  CCAGCTCAAGCTGGTCGACCGACGTCCCCGCGCTTATGCCCTCACCCACGAAGGCCAACGTGTTGCGGAACTCGCCGAGCAGATGGCCATGTCCTCTTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3813098‑3813252 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggtgcCGAGAGCACCACTTCGCCTTCCACTGTCTGTTGGCCGGCGCTGGCGAAATGCTCCAGGGCAAAAGAGGACATGGCCATCTGCTCGGCGAGTTCCGCAACACGTTGGCCTTCGTGGGTGAGGGCATAAGCGCGGGGACGTCGGTCGACCA  <  NC_002947/3813257‑3813109

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.