New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_LN832404	61489 =	0 (0.000)	14 (0.170)	14/394	NT	100%	intergenic (‑76/+87)	EK12AG100_RS23030/rapA	RNA polymerase‑associated protein RapA/RNA polymerase‑associated protein RapA
	?	NZ_LN832404	380645 =	NA (NA)					coding (41/361 nt)	EK12AG100_RS01865	IS3‑like element IS2 family transposase

ACGTGAAGGTATTCGCGCTGCGGTGTTCCACGAAGGTATGTCGATTATCGAACGTGACCGCGCTGCCGCCTGGTTTGCCGAAGAAGACACCGGCGCACAGGTACTGCTGTGCTCAGAAATCGGTTCTGAAGGACGTAACTTCCAGTTCGCCAGCCACATGGTGATGTTTGACCTGCCATTCAACCCGGATCTACTGGAGCAGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NZ_LN832404/61858‑61489 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGTCTTACTGCTGTCGCCGCCGGAGAACAGGTTGTTCCTGCCTCTGAACTTGCTGCCGCCATGAAGCAGATTAAAGAACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTC  >  NZ_LN832404/380645‑380937                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ctgtctggtTATTCGTGCTGCGTGTTTCAACGAATGTATGTCGATTATCGAGCGTGACCGGGTGGCCGCCTGTGTTGCCGAAGTAGAAACCGGCGTACAGGTACTGCTGTGCTCAGAAATCGGTTCTGAAGGACGTAACTTCCAGTTCGCCAGCCACATGGTGATGTTTGACCTGCCATTCAACCCGGATCTACTGGAGCAGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTAGACTGGCC                                                                                                                                                                                                                                                                                                                                                                                   <  2:558182/285‑1           ATTCGCGCTGCGGTGTTCCACGAAGGTATGTCGATTATCGAACGTGACCGCGCTGCCGCCTGGTTTGCCGAAGAAGACACCGGCGCACAGGTACTGCTGTGCTCAGAAATCGGTTCTGAAGGACGTAACTTCCAGTTCGCCAGCCACATGGTGATGTTTGACCTGCCATTCAACCCGGATCTACTGGAGCAGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTAGACTGGCCCCCTGAATCT                                                                                                                                                                                                                                                                                                                                                                         <  1:359232/294‑1            TTCGCGCTGCGGTGTTCCACGAAGGTATGTCGATTATCGAACGTGACCGCGCTGCCGCCTGGTTTGCCGAAGAAGACACCGGCGCACAGGTACTGCTGTGCTCAGAAATCGGTTCTGAAGGACGTAACTTCCAGTTCGCCAGCCACATGGTGATGTTTGACCTGCCATTCAACCCGGATCTACTGGAGCAGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCCAGGACTTACGTACCATTGACCTTTTCTGGTAAAAACCGCTCAGACGGTAGCCTGGCCCCATAAATCTC                                                                                                                                                                                                                                                                                                                                                                        >  2:422971/1‑294                                GAAGGTATGTCGATTATCGAACGTGACCGCGCTGCCGCCTGGTTTGCCGAAGAAGACACCGGCGCACAGGTACTGCTGTGCTCAGAAATCGGTTCTGAAGGACGTAACTTCCAGTTCGCCAGCCACATGGTGATGTTTGACCTGCCATTCAACCCGGATCTACTGGAGCAGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTA                                                                                                                                                                                                                                                                                                                                                    <  1:449083/294‑1                                     tattgtGATTCTCGACCGTAACCGCGCTGCCGCCTGGTTTGCCGAAGAAGACACCGGCGCACAGGTACTGCTGTGCTCAGAAATCGGTTCTGAAGGACGTAACTTCCAGTTCGCCAGCCACATGGTGATGTTTGACCTGCCATTCAACCCGGATCTACTGGAGCAGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAA                                                                                                                                                                                                                                                                                                                                               <  2:465577/288‑1                                     TATGTCGATTATCGAACGTGACCGCGCTGCCGCCTGGTTTGCCGAAGAAGACACCGGCGCACAGGTACTGCTGTGCTCAGAAATCGGTTCTGAAGGACGTAACTTCCAGTTCGCCAGCCACATGGTGATGTTTGACCTGCCATTCAACCCGGATCTACTGGAGCAGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAACTAA                                                                                                                                                                                                                                                                                                                                               >  2:359802/1‑294                                               agccagcaggcCCGCGCTGCCGCCTTGTTTGCCAAAGAAGAAACCTGCGTACAGGTACTGATTTGCTCAGAATACGTTTCTAAAGGACGTAACTTCCAGTTCTCCAGCCACATGGTGATGTTTGACCTGCCATTCAACCCGGATCTACTGGAGCAGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCT                                                                                                                                                                                                                                                                                                                                     <  2:689497/283‑1                                                            GCGCTGCCGCCTGGTTTGCCGAAGAAGACACCGGCGCACAGGTACTGCTGTGCTCAGAAATCGGTTCTGAAGGACGTAACTTCCAGTTCGCCAGCCACATGGTGATGTTTGACCTGCCATTCAACCCGGATCTACTGGAGCAGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTAGACTGGCCCCCTGACTCTCCAGACAACCAATATCACTTACATAAGTGATAGTCTTAATACTAGTTTT                                                                                                                                                                                                                                                                                                                        >  1:875339/1‑294                                                                  cgtccggggTTGCCGAGGAAGACACCGGCTCACAGGGACTTCTGTGCTCAGAAATCGGTTCTGCAGGACTTACCTTCCAGTGCGCCAGCCACATGGTGATGTTTGACCTGCCATTCAACCCGGATCTACTGGAGCAGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACT                                                                                                                                                                                                                                                                                                                  <  2:464536/285‑1                                                                       TGGTTTGCCGAAGAAGACACCGGCGCACAGGTACTGCTGTGCTCAGAAATCGGTTCTGAAGGACGTAACTTCCAGTTCGCCAGCCACATGGTGATGTTTGACCTGCCATTCAACCCGGATCTACTGGAGCAGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTTCCTTATCTGGAGACAACCGCCCCGTCGGTAGCCTGGCCCCCTGAATCTCAAGCCAAACAATATCCCATAAATACTTGATATCCTTAATCCTAGTTTTTACACTTGTCA                                                                                                                                                                                                                                                                                                             >  2:24047/1‑294                                                                        GGTTTGCCGAAGAAGACACCGGCGCACAGGGACTGCTGTGCTCAGAAATCGGTTCTGAAGGACGTAACTTCCAGTTCGCCAGCCACATGGTGATGGTTGACCTGCCATTCAACCCGGATCTACTGGAGCAGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCAT                                                                                                                                                                                                                                                                                                            <  2:268862/294‑1                                                                             GCCGAAGAAGACACCGGCGCACAGGTACTGCTGTGCTCAGAAATCGGTTCTGAAGGACGTAACTTCCAGTTCGCCAGCCACATGGTGATGTTTGACCTGCCATTCAACCCGGATCTACTGGAGCAGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAG                                                                                                                                                                                                                                                                                                       <  1:405093/294‑1                                                                                                           acagtgtctaAAATCTGTGCTGTAGGATGTGACTTTCCGTTCGACAGCCACATGGTGATGTTTGCCCTGCTAGTCCACCCGGATCTACTGGAGGTGCGTAATGGTCGTCTGGATCGTATCGTCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGA                                                                                                                                                                                                                                                                         <  2:449468/284‑1                                                                                                           CTGTGCTCAGAAATCGGTTCTGAAGGACGTAACTTCCAGTTCGCCAGCCACATGGTGATGTTTGACCTGCCATTCAACCCGGATCTACTGGAGCAGCGTATTGGTAGTCTGGAACGTATCGGCAAGGCGCACGATATTCAGATCCAAGTGCCTTATCTGGAGAACACCGCTCCGACGGTAGACTGGCCCCCTGAATACCCAGACAACCAATATCAATTAAACAAGTGATAGTATTAATACTACACTTACGACAAGTCATTGGAGAACAGATGATTGACGTATTAGGGCAGGAGc                                                                                                                                                                                                                                                                         >  2:96089/1‑293                                                                                                              TGCTCAGAACTCGGTTTTTAAGTACGTAACTTCCAGTTCGCCAGCCACATGGGGATGTGTGACCTGCCATCCAACCCGGTGTTACGGGAGCAGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGTAGAAAACCGCTCAGTCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAAC                                                                                                                                                                                                                                                                      <  2:711451/294‑1                                                                                                               GCTCAGAAATCGGTTCTGAAGGACGTAACTTCCAGTTCGCCAGCCACATGGTGATGTTTGACCTGCCATTCAACCCGGATCTACTGGAGCAGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACa                                                                                                                                                                                                                                                                     >  1:711451/1‑293                                                                                                                         CGGTTCTGAAGGACGTAACTTCCAGTTCGCCAGCCACATGGTGATGTTTGACCTGCCATTCAACCCGGATCTACTGGAGCAGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTACGGCCGGAGAAACGCAGACGGCGT                                                                                                                                                                                                                                                           >  1:424378/1‑294                                                                                                                                               CAGTTCGCCAGCCACATGGTGATGTGTGACCTGCCATTCAACCCGGATCTACTGGAGCAGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAA                                                                                                                                                                                                                                     <  1:846197/294‑1                                                                                                                                                    CGCCAGCCACATGGTGATGTTTGACCTGCAATTCAACCCGGATCTACTGGAGCAGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGCAAAGATCGCAATTGTT                                                                                                                                                                                                                                >  1:812580/1‑294                                                                                                                                                              ATGGTGATGTTTGACCTGCCATTCAACCCGGATCTACTGGAGCAGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGCACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCT                                                                                                                                                                                                                      >  1:345822/1‑294                                                                                                                                                                   GATGTTTGACCTGCCATTCAACCCGGATCTACTGGAGCAGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTAGACTGGCCCCCTGACTCTCCAGACAACCAATATCCCTTACATAAGTGATAGCCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGCTGATTGATGTCTTAGGGCAGGCGAACCGCAGACGGCGTACCAAACAGGAAAAGATCGCAATTTTTCAGCAGAGCTTTGAA                                                                                                                                                                                                                 >  2:97747/1‑294                                                                                                                                                                                                                 GGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATACGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGAAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCACGCGTTGCCCGGCAACACGGTGTAGCAG                                                                                                                                                                   >  1:921960/1‑294                                                                                                                                                                                                                                                agaaTCAGGTTCATCTGTCTTATCGGGAGAAAACCTCGGAGTCGGGAGACTGGCACCCTTAATATCCAGACAACCAATATCACGTAAATAAGGGATATTCGGAGTATTAGTTTTTAGACTAGGCATTGGAGAACAGAGGCTTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTGTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATA                                                                                                                                    <  2:627631/290‑1                                                                                                                                                                                                                                                       GATCCATGTGCCTTATCTGAAGAAAACCGCTCAGTCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAA                                                                                                                             <  1:703305/294‑1                                                                                                                                                                                                                                                           CATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAA                                                                                                                         >  1:866091/1‑294                                                                                                                                                                                                                                                                                       AGTCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAACGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTTCCCGGCAACATGGTGTAGCCGCCAGCCAGTTATTTATCTGGCGTAAGCAATACCAGGAAGCAAGTCTTACTGCTGTCGCCGCCGGAGAACA                                                                                             >  2:978565/1‑294                                                                                                                                                                                                                                                                                            GTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGTCTTACTGCTGTCGCCGCCGGAGAACAGGTTG                                                                                        >  1:789396/1‑294                                                                                                                                                                                                                                                                                                                                                                               ggcGAACGGAAGATTGATGTCTTAAGGCCGGGGAAACTGAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGTCTTACTGCTGTCGCCGCCGGAGAACAGGTTGTTCCTGCCTCTGAACTTGCTGCCGCCATGAAGCAGATTAAAGAACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAA     <  2:485499/291‑1                                                                                                                                                                                                                                                                                                                                                                                 AGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGTCTTACTGCTGTCGCCGCCGGAGAACAGGTTGTTCCTGCCTCTGAACTTGCTGCCGCCATGAAGCAGATTAAAGAACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACT   >  1:469827/1‑294                                                                                                                                                                                                                                                                                                                                                                                 AGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGTCTTACTGCTGTCGCCGCCGGAGAACAGGTTGTTCCTGCCTCTGAACTTGCTGCCGCCATGAAGCAGATTAAAGAACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACT   >  1:712151/1‑294                                                                                                                                                                                                                                                                                                                                                                                  GAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGTCTTACTGCTGTCGCCGCCGGAGAACAGGTTGTTCCTGCCTCTGAACTTGCTGCCGCCATGAAGCAGATTAAAGAACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTC  <  1:550812/294‑1                                                                                                                                                                                                                                                                                                                                                                                  GAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGTCTTACTGCTGTCGCCGCCGGAGAACAGGTTGTTCCTGCCTCTGAACTTGCTGCCGCCATGAAGCAGATTAAAGAACGCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAcacc  >  2:673710/1‑290                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ACGTGAAGGTATTCGCGCTGCGGTGTTCCACGAAGGTATGTCGATTATCGAACGTGACCGCGCTGCCGCCTGGTTTGCCGAAGAAGACACCGGCGCACAGGTACTGCTGTGCTCAGAAATCGGTTCTGAAGGACGTAACTTCCAGTTCGCCAGCCACATGGTGATGTTTGACCTGCCATTCAACCCGGATCTACTGGAGCAGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCACGATATTCAGATCCATGTGCCTTATCTGGAGAAAACCGCTCAGTCGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NZ_LN832404/61858‑61489 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGTCTTACTGCTGTCGCCGCCGGAGAACAGGTTGTTCCTGCCTCTGAACTTGCTGCCGCCATGAAGCAGATTAAAGAACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTC  >  NZ_LN832404/380645‑380937

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.