New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_LN832404	61489 =	0 (0.000)	14 (0.170)	14/394	NT	100%	intergenic (‑76/+87)	EK12AG100_RS23030/rapA	RNA polymerase‑associated protein RapA/RNA polymerase‑associated protein RapA
	?	NZ_LN832404	380645 =	NA (NA)					coding (41/361 nt)	EK12AG100_RS01865	IS3‑like element IS2 family transposase

TCCAGCAGGCGGTCACGACCCTGTTCCAGCTGTGCTTTCAGCGCTTCATGTTGCTCGCGGCAGTTTTTGATCAGATCGTCAAAGCCTTCGGTTTGATCCGGTGAAGCCAGATAGTTAATCAGATCGTTGTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATACCAGCGCACCAGCACCGACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGTGCGCCTGGCCGATACGATCCAGACGACCAATACGCTGCTCCAGTAGATCCGGGTTGAATGGCAGGTCAAACATCACCATGTGGCTGGCGAACTGGAAGTTACGTCCTTCAGAACCGATTTCTGAGCACAGCAGTACCTGTGCGCCGGTGTCTTCTTCGGC  >  NZ_LN832404/61196‑61782                                                                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                                                      ggtgtcattttccatcgttttcttgccgagcaggcgctggcgttctttaatctgcttcatggcggcagcaagttcagaggcaggaacaacctgttctccggcggcgacagcagtaagacttccttcctggtattgcttacgccagagaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttc                                                                                                                                                                                                                                                                                                       >  2:673710‑M1/294‑294 (MQ=255) gagttcattttccatcgttttcttgccgagcaggcgctggagttctttaatctgcttcatggcggcagcaagttcagaggcaggaacaacctgttctccggcggcgacagcagtaagacttccttcctggtattgcttacgccagagaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttc                                                                                                                                                                                                                                                                                                       <  1:550812‑M1/1‑1 (MQ=255)  agttcattttccatcgttttcttgccgagcaggcgctggagttctttaatctgcttcatggcggcagcaagttcagaggcaggaacaacctgttctccggcggcgacagcagtaagacttccttcctggtattgcttacgccagagaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttct                                                                                                                                                                                                                                                                                                      >  1:712151‑M1/293‑294 (MQ=255)  agttcattttccatcgttttcttgccgagcaggcgctggagttctttaatctgcttcatggcggcagcaagttcagaggcaggaacaacctgttctccggcggcgacagcagtaagacttccttcctggtattgcttacgccagagaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttct                                                                                                                                                                                                                                                                                                      >  1:469827‑M1/293‑294 (MQ=255)    ttcattttccatcgttttcttgccgagcaggcgctggagttctttaatctgcttcatggcggcagcaagttcagaggcaggaacaacctgttctccggcggcgacagcagtaagacttccttcctggtattgcttacgccagagaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctcagtttccccggccttaagacatcaatcttccgttcgcc                                                                                                                                                                                                                                                                                                    <  2:485499‑M1/4‑4 (MQ=255)                         tCCAGCTGTGCTTTCACGGCTTCATGTTGTCCGCTGCAGTGTTTGATCAGTTCGTCAAAGCCTTCGGTGTGATCCGGTGAAGCCAGATAGTTAATCAGATCGTTGTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATACCAGCGCACCAGCACCGACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCgagcgataacccagcgcactatgc                                                                                                                                                                                                                                                                               <  2:448842‑M1/294‑25 (MQ=255)                              tggtgctTTCAGCGCTTCATGTTGCTCGCGGCATGTTTTGATCAGATCGTCAAAGCCTTCGTTTTGATCCGGTGAAGCCAGATAGTTAATCAGATCGTTGTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATACCAGCGCACCAGCACCGACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCgagcgataacccagcgcactatgcggatg                                                                                                                                                                                                                                                                          <  1:689819‑M1/292‑30 (MQ=255)                                              tCATGTTGCTCGCGGCAGTTTTTGATCAGATCGTCAAAGCCTTCGGTTTGATCCGGTGAAGCCAGATAGTTAATCAGATCGTTGTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATACCAGCGCACCAGCACCGACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCgagcgataacccagcgcactatgcggatgccattcgttataatgc                                                                                                                                                                                                                                                          >  1:721942‑M1/1‑249 (MQ=255)                                                                        cAGATCGTCAAAGCCTTCGGTTTGATCCGGTGAAGCCAGATAGTTAATCAGATCGTTGTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATACCAGCGCACCAGCACCGACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgc                                                                                                                                                                                                                                <  2:224242‑M1/294‑72 (MQ=255)                                                                              gTCAAAGCCTTCGGTTTGATCCGGTGAAGCCAGATAGTTAATCAGATCGTTGTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATACCAGCGCACCAGCACCGACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgt                                                                                                                                                                                                                          >  1:626944‑M1/1‑217 (MQ=255)                                                                               tccagtccgttggttggatccgttGAATCCAGAGAGTTAATCAGTGCGTTGTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATACCAGCGCACCAGCACCGACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgtt                                                                                                                                                                                                                         <  2:1007452‑M1/283‑79 (MQ=255)                                                                                       caacctgttctccggcggcgacagcagtaagacttccttcctggtattgcttacgccagagaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAc                                                                                                                                                                                                                 >  1:789396‑M1/208‑294 (MQ=255)                                                                                            tgttctccggcggcgacagcagtaagacttgcttcctggtattgcttacgccagataaataactggctggcggctacaccatgttgccgggaaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcgtttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACCGACt                                                                                                                                                                                                            >  2:978565‑M1/203‑294 (MQ=255)                                                                                                    ggTGAAGCCAGATAGTTAATCAGATCGTTGTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATACCAGCGCACCAGCACCGACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCgagcgataaccccgcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaagtttctttgctgccggtcacccctcgggtttggccagt                                                                                                                                                                                                    >  2:523000‑M1/1‑195 (MQ=255)                                                                                                              gATAGTTAATCAGATCGTTGTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATACCAGCGCACCAGCACCGACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgt                                                                                                                                                                                          >  1:1036393‑M1/1‑185 (MQ=255)                                                                                                                     aaTCAGATCGCTGTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCATGTGTGCTCAAATGAATCCAGACCTTCGTGATACCAGCGCACCAGCACCGACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGTCgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatggagtcacg                                                                                                                                                                                   <  1:611759‑M1/294‑117 (MQ=255)                                                                                                                        ttccttcctggtattgcttacgccagagaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACCGACTGAGCGGTTTTCTCCAGATAAGGCACATg                                                                                                                                                                                >  1:866091‑M1/175‑294 (MQ=255)                                                                                                                        cAGATCGTTGTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATACCAGCGCACCAGCACCGACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctt                                                                                                                                                                                <  1:558941‑M1/294‑120 (MQ=255)                                                                                                                            ttcctggtattgcttacgccagagaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACCGACTGAGCGGTTTTCTTCAGATAAGGCACATGGATc                                                                                                                                                                            <  1:703305‑M1/124‑1 (MQ=255)                                                                                                                               ttGTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATACCAGCGCACCAGCACCGACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgtt                                                                                                                                                                         <  1:674969‑M1/294‑127 (MQ=255)                                                                                                                                   tattgcttacgccagagaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcacagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaagcctctgttCTCCAATGCCTAGTCTAAAAACTAATACTCCGAATATCCCTTATTTACGTGATATTGGTTGTCTGGATATTAAGGGTGCCAGTCTCCCGACTCCGAGGTTTTCTCCCGATAAGACAGATGAAcctgattct                                                                                                                                                                     <  2:627631‑M1/131‑5 (MQ=255)                                                                                                                                               taatAGTTCGTCCGGGCGGGAAGTTGTGCGCAAATTCAGCCAGACCTTCGTGATACCAGCGCACCAGCACCGACTTGATTTGCCCCTATATTTCCAGACATCTGTTATCCCTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctg                                                                                                                                                         <  2:166810‑M1/293‑143 (MQ=255)                                                                                                                                                                  ctgctacaccgtgttgccgggcaacgcgtgagaccgtcatccccggttcaaagctctgctgaacaatttcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACGTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGTGCGCCTGGCCGATACGATCCAGACGAcc                                                                                                                                      >  1:921960‑M1/133‑294 (MQ=255)                                                                                                                                                                   cAGGTGTGCTCAAATGCATCCAGACCTTCGTGATACCAGCGCACCAGCACCGACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCgagcgataacccagcgcactatgcggctgccattcgttataatgctcgaacgcctctgcacggttctttgctgccgttaacccgtctggtttgggcatgatactgctgtagtcacgctttatcgttttcacgcatctctctgctattcctttactctccgga                                                                                                                                     >  2:908756‑M1/1‑132 (MQ=255)                                                                                                                                                                     ggTGTGCTTAAATGCATCCCGACCTTCGTGATACCAGCGCACCAGCACCGACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATGACAAGCCCGCTGCCGCAGATATTCCCGTGGCgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgttactctccggact                                                                                                                                   <  2:876978‑M1/294‑165 (MQ=255)                                                                                                                                                                                                gTGATACCAGCGCACCAGCACCGACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgttactctccggactccgcaccgccgtgttcttcggttcaag                                                                                                        >  1:422268‑M1/1‑103 (MQ=255)                                                                                                                                                                                                         cacaaatgattatgactggatttgcccCTAGAGTTCCAGACATCTGTTATCACGTAACCCATTACAAGCCCGCTGCCGCAGATATGCCCGTGGCgagcgataacccagcgcactaggcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgttactctccggactccgcaccgccgtgttcttcggttcaagtcccaacat                                                                                               <  2:954354‑M1/281‑201 (MQ=255)                                                                                                                                                                                                                ttcaaagctctgctgaaaaattgcgatcttttcctgtttggtacgccgtctgcggttcgcctgccctaagacatcaatcagctgttCTCCAATGACTAGTCTAAAAACTAGTATTAAGGCTATCACTTATGTAAGGGATATTGGTTGTCTGGAGAGTCAGGGGGCCAGTCTACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGTGCGCCTGGCCGATACGATCCAGACGACCAATACGCTGCTCCAGTAGATCCGGGTTGAATGGCAGGTCAAACATc                                                                                        >  2:97747‑M1/87‑294 (MQ=255)                                                                                                                                                                                                                     agctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgtgCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGTGCGCCTGGCCGATACGATCCAGACGACCAATACGCTGCTCCAGTAGATCCGGGTTGAATGGCAGGTCAAACATCACCAt                                                                                   >  1:345822‑M1/82‑294 (MQ=255)                                                                                                                                                                                                                        cttgattTGCCCCTAGTTTTCCAGCCATCTGTTATCCCTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgttactctccggactccgcaccgccgtgttcttcggttcaagtcccaacatccgggcgaactggcg                                                                                <  1:230147‑M1/291‑216 (MQ=255)                                                                                                                                                                                                                            attgaccccattattcccaaacagcGCTTAGCACTTAACCCATCACAAGCCCGCTGCCGCAGATATTCCCGTGGCgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgttactctccggactccgcaccgccgtgttcttcggttcaagtcccaacatccgggcgaactggcgtgtt                                                                            <  2:67803‑M1/283‑220 (MQ=255)                                                                                                                                                                                                                               aacaattgcgatctttgcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGTGCGCCTGGCCGATACGATCCAGACGACCAATACGCTGCTCCAGTAGATCCGGGTTGAATTGCAGGTCAAACATCACCATGTGGCTGGCg                                                                         >  1:812580‑M1/72‑294 (MQ=255)                                                                                                                                                                                                                                    ttgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGTGCGCCTGGCCGATACGATCCAGACGACCAATACGCTGCTCCAGTAGATCCGGGTTGAATGGCAGGTCACACATCACCATGTGGCTGGCGAACTg                                                                    <  1:846197‑M1/228‑1 (MQ=255)                                                                                                                                                                                                                                         ttttccgacagctGTTATCACGTAACCCATTCCAAGCCCGCTGCCGCAGATATTCCCTTGGCgagctataacccatcgcactatgctgatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgttactctccggactccgcaccgccgtgttcttcggttcaagtcccaacatccgggcgaactggcgtgtttcattagcccggt                                                               <  2:891101‑M1/288‑233 (MQ=255)                                                                                                                                                                                                                                          tgccggacatcGGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCgagcgttaacccagcgcactatgctgatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgttactctccggactccgcaccgccgtgttcttcggttcaagtcccaacatccgggcgaactggcgtgtttcattagcccggta                                                              <  2:90763‑M1/289‑234 (MQ=255)                                                                                                                                                                                                                                                      tttttcactTAACCCGTTCCAAGCCCGCTGCCCCCGATATTCCCCGGGCcagcgttaacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaagtttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgttactctccggactccgcaccgccgtgttcttcggttcaagtcccaacatccgggcgaactggcgtgtttcattagcccggtagcatgaaccatt                                                  <  2:653973‑M1/290‑246 (MQ=255)                                                                                                                                                                                                                                                      gttaccgctgaccccattccacgcccgCTGCCGCAGATATTCCCGTGGCgcgcgataccccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgtaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgttactctccggactccgcaccgccgtgttcttcggttcaagtcccaacatccgggcgaactggcgtgtttcattagcccggtagcatgaaccatt                                                  <  2:1020267‑M1/282‑246 (MQ=255)                                                                                                                                                                                                                                                        taacacctcacccactacaAGCCCGCTGCCGCAGATATTCCCGTGGCgggcgataacccagcgcactatgcggatgccattctttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctgttccgttactctccggactccgcaccgccgtgttcttcggttcaagtcccaacatccgggcgaactggcgtgtttcattagcccggtagcatgaaccattat                                                <  2:790376‑M1/285‑248 (MQ=255)                                                                                                                                                                                                                                                          acgccgtctgcgtttctccggccgtaagacatcaatcatctgttCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGTGCGCCTGGCCGATACGATCCAGACGACCAATACGCTGCTCCAGTAGATCCGGGTTGAATGGCAGGTCAAACATCACCATGTGGCTGGCGAACTGGAAGTTACGTCCTTCAGAACCg                                              >  1:424378‑M1/45‑294 (MQ=255)                                                                                                                                                                                                                                                               ataccaattcaaagcctgctcccgTAGATATGCCCGTGCGggacgttaacccggcgcactatgcggatgccagtcgttagaatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgttactctccggactccgcaccgccgtgttcttcggttcaagtcccaacatccgggcgaactggcgtgtttcattagcccggtagcatgaaccattatccgtcag                                         <  2:165631‑M1/283‑255 (MQ=255)                                                                                                                                                                                                                                                                    tgtttctccggccctaagacatcaatcatctgttCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGTGCGCCTGGCCGATACGATCCAGACGACCAATACGCTGCTCCAGTAGATCCGGGTTGAATGGCAGGTCAAACATCACCATGTGGCTGGCGAACTGGAAGTTACGTCCTTCAGAACCGATTTCTGAGc                                    >  1:711451‑M1/35‑294 (MQ=255)                                                                                                                                                                                                                                                                     gtttctccggccctaagacatcaatcatctgttCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACCGACTGAGCGGTTTTCTACAGATAAGGCACATGGATCTGAATATCGTGCGCCTGGCCGATACGATCCAGACGACCAATACGCTGCTCCCGTAACACCGGGTTGGATGGCAGGTCACACATCCCCATGTGGCTGGCGAACTGGAAGTTACGTACTTAAAAACCGAGTTCTGAGca                                   <  2:711451‑M1/261‑1 (MQ=255)                                                                                                                                                                                                                                                                        tctccggccctaagacatcaatcatctgttCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGTGCGCCTGGACGATACGATCCAGACGACCATTACGCACCTCCAGTAGATCCGGGTGGACTAGCAGGGCAAACATCACCATGTGGCTGTCGAACGGAAAGTCACATCCTacagcacagattttagacactgt                                <  2:449468‑M1/264‑11 (MQ=255)                                                                                                                                                                                                                                                                        gctcctgccctaatacgtcaatcatctgttCTCCAATGACTTGTCGTAAGTGTAGTATTAATACTATCACTTGTTTAATTGATATTGGTTGTCTGGGTATTCAGGGGGCCAGTCTACCGTCGGAGCGGTGTTCTCCAGATAAGGCACTTGGATCTGAATATCGTGCGCCTTGCCGATACGTTCCAGACTACCAATACGCTGCTCCAGTAGATCCGGGTTGAATGGCAGGTCAAACATCACCATGTGGCTGGCGAACTGGAAGTTACGTCCTTCAGAACCGATTTCTGAGCAcag                                >  2:96089‑M1/31‑294 (MQ=255)                                                                                                                                                                                                                                                                                        ttattttgccgtgtcgagggagaacccaccgcaattggtggttgccatttgttttacggttcgatcgcctctgcagggttctttgctgccgttaaccgggctggtttgggcatgatactgttgtagtcacgctttatcgttttcacgaagctctctgctattccgttactctccggactccgcaccgccgtgttcttcggttcaagtcccaacatccgggcgaactggcgtgtttcattagcccggtagcatgaaccattatccgtcagccactccactggagacgacggaaga                <  2:1065599‑M1/286‑280 (MQ=255)                                                                                                                                                                                                                                                                                                      CTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGTGCGCCTGGCCGATACGATCCAGACGACCAATACGCTGCTCCAGTAGATCCGGGTTGAATGGCAGGTCAAACATCACCATGTGGCTGGCGAACTGGAAGTTACGTCCTTCAGAACCGATTTCTGAGCACAGCAGTACCTGTGCGCCGGTGTCTTCTTCGGc  <  1:405093‑M1/294‑1 (MQ=255)                                                                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                                                      TCCAGCAGGCGGTCACGACCCTGTTCCAGCTGTGCTTTCAGCGCTTCATGTTGCTCGCGGCAGTTTTTGATCAGATCGTCAAAGCCTTCGGTTTGATCCGGTGAAGCCAGATAGTTAATCAGATCGTTGTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATACCAGCGCACCAGCACCGACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGTGCGCCTGGCCGATACGATCCAGACGACCAATACGCTGCTCCAGTAGATCCGGGTTGAATGGCAGGTCAAACATCACCATGTGGCTGGCGAACTGGAAGTTACGTCCTTCAGAACCGATTTCTGAGCACAGCAGTACCTGTGCGCCGGTGTCTTCTTCGGC  >  NZ_LN832404/61196‑61782

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.