mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,781,131 | 0 | T | C | 34.2% | 62.4 / 10.9 | 42 | intergenic (+114/‑84) | lldD/trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| * | NC_000913 | 3,781,152 | 0 | A | G | 33.3% | 70.3 / 13.3 | 43 | intergenic (+135/‑63) | lldD/trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| * | NC_000913 | 4,296,268 | 0 | T | C | 28.8% | 69.1 / 30.1 | 53 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 3,781,120 | 0 | T | C | 25.6% | 82.9 / 12.8 | 45 | intergenic (+103/‑95) | lldD/trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| * | NC_000913 | 3,875,521 | 0 | T | C | 24.4% | 173.7 / 30.3 | 91 | A28A (GCT→GCC) | yidX | putative lipoprotein |
| * | NC_000913 | 3,781,133 | 0 | C | G | 23.8% | 101.5 / 10.6 | 42 | intergenic (+116/‑82) | lldD/trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3497415 | 57 (0.740) | 9 (0.120) | 9/450 | 4.9 | 13.5% | coding (413/807 nt) | nirC | nitrite transporter |
| ? | NC_000913 | 3497429 = | 58 (0.750) | coding (427/807 nt) | nirC | nitrite transporter | |||||
| * | ? | NC_000913 | = 1320853 | 57 (0.760) | 6 (0.080) +GGT |
4/430 | 6.7 | 9.5% | coding (532/1596 nt) | trpD | fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase |
| ? | NC_000913 | 1320854 = | 57 (0.740) | coding (531/1596 nt) | trpD | fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase | |||||
| * | ? | NC_000913 | 4325842 = | NA (NA) | 8 (0.100) +AAC |
4/444 | 6.8 | NA | noncoding (41/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | = 4326338 | NA (NA) | noncoding (537/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913 | = 1357567 | 81 (1.050) | 4 (0.050) | 4/448 | 6.9 | 4.7% | coding (102/246 nt) | ymjA | DUF2543 family protein |
| ? | NC_000913 | 1357571 = | 81 (1.050) | coding (98/246 nt) | ymjA | DUF2543 family protein | |||||
| * | ? | NC_000913 | = 470632 | 121 (1.570) | 3 (0.040) | 3/446 | 7.4 | 2.4% | coding (1762/1773 nt) | mdlA | putative multidrug ABC transporter ATPase |
| ? | NC_000913 | 470636 = | 124 (1.620) | coding (1766/1773 nt) | mdlA | putative multidrug ABC transporter ATPase | |||||