New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | 3463082 = | 42 (0.670) | 8 (0.130) | 8/290 | 4.6 | 14.1% | coding (159/984 nt) | gspK | general secretory pathway component, cryptic |
? | NC_000913 | 3463296 = | 57 (0.940) | coding (373/984 nt) | gspK | general secretory pathway component, cryptic | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
GTTTTGCATTACCTGAGCAGTTAGCGAGAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACGCGGCGTCGCGCTGCTCATTGTACTCATGTTACTGGCGCTCATGGCTGCTCTGGCAGCAGACATGACGCTCAGTTTTCACAGCCAGCTTCAGCGAACCCGCCAGGTAAACCATCATCTGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGAC‑AGACAGACCACGTTGCAGCAGTA‑CTGGGCACAGCCACAACAGTTGCAGCTGGAAGATGGCAATACAGTGAAGTGGCA‑GTTACGCGATGCCCAGCACTGTTTTAATCTCAATGCGTTAGCAAAAATCTCTGACGACCCGCTGGCTT‑CCCCTGATTTCCCCGCCCAGGTATTCAGTGCGCTGCTGATT > NC_000913/3462855‑3463319 | ttttgacATGACCTGAGCAGTTAGCGAGAGAAGAGTCGCCAGCTAAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACGCGGCGTCGCGCTGCTCATTGTACTCATGTTACTGGCGCTCATGGCTGCTCTGGCAGCAGACATGACGCTCAGTTTTCACAGCCAGCTTCAGCGAACCCGCCAGGTAAACCATCATCTGCAACGGCAATATGATATTGAACTGGCGGAGAAAc < 2:148083/232‑1 (MQ=255) tACCTGAGCAGTTAGCGAGAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACGCGGCGTCGCGCTGCTCATTGTACTCATGTTACTGGCGCTCATGGCTGCTCTGGCAGCAGACATGACGCTCAGTTTTCACAGCCAGCTTCAGCGAACCCGCCAGGTAAACCATCATCTGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGc < 1:654876/239‑1 (MQ=255) tGAGCAGTTAGCGAGAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACGCGGCGTCGCGCTGCTCATTGTACTCATGTTACTGGCGCTCATGGCTGCTCTGGCAGCAGACATGACGCTCAGTTTTCACAGCCAGCTTCAGCGAACCCGCCAGGTAAACCATCATCTGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGc < 1:293481/239‑1 (MQ=255) gCAGTTAGCGAGAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACGCGGCGTCGCGCTGCTCATTGTACTCATGTTACTGGCGCTCATGGCTGCTCTGGCAGCAGACATGACGCTCAGTTTTCACAGCCAGCTTCAGCGAACCCGCCAGGTAAACCATCATCTGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCt > 2:231156/1‑238 (MQ=255) aGCGAGAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACGCGGCGTCGCGCTGCTCATTGTACTCATGTTACTGGCGCTCATGGCTGCTCTGGCAGCAGACATGACGCTCAGTTTTCACAGCCAGCTTCCGCGAACCCGCCAGGTAAACCATCATCTGCAACGGCAATATGATATTGAACTGGCGGCGGAACATGCGCTTTCCAGCGTCAacccg > 2:293481/1‑237 (MQ=255) ccGGGAATAATAACCATGAATAATGAACAACGCGGCGTCGCGCTGCTCATTGTACTCATGTTACTGGCGCTCATGGCTGCTCTGGCAGCAGACATGACGCTCAGTTTTCACAGCCAGCTTCAGCGAACCCGCCAGGTAAACCATCATCTGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGAC‑AGACAGACCACGt < 1:698224/238‑1 (MQ=255) ccGGGAATAATAACCATGAATAATGAACAACGCGGCGTCGCGCTGCTCATTGTACTCATGTTACTGGCGCTCATGGCTGCTCTGGCAGCAGACATGACGCTCAGTTTTCACAGCCAGCTTCAGCGAACCCGCCAGGTAAACCATCATCTGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGAC‑AGACAGACCACGt < 1:231156/238‑1 (MQ=255) cATGAATAATGAACAACGCGGCGTCGCGCTGCTCATTGTACTCATGTTACTGGCGCTCATGGCTGCTCTGGCAGCAGACATGACGCTCAGTTTTCACAGCCAGCTTCAGCGAACCCGCCAGGTAAACCATCATCTGCAACGGCAATATGAAATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGAC‑AGACAGACCACGTTGCAGCAGTA‑CTgg > 1:410907/1‑238 (MQ=255) aataatGAACAACGCGGCGTCGCGCTGCTCATTGTACTCATGTTACTGGCGCTCATGGCTGCTCTGGCAGCAGACATGACGCTCAGTTTTCACAGCCAGCTTCAGCGAACCCGCCAGGTAAACCATCATCTGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGAC‑AGACAGACCACGTTGCAGCAGTA‑CTGGGcac > 1:765038/1‑238 (MQ=255) gAACAACGCGGCGTCGCGCTGCTCATTGTACTCATGTTACTGGCGCTCATGGCTGCTCTGGCAGCAGACATGACGCTCAGTTTTCACAGCCAGCTTCAGCGAACCCGCCAGGTAAACCATCATCTGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGAC‑AGACAGACCACGTTGCAGCAGTA‑CTGGGCACAGCcaca > 1:54439/1‑239 (MQ=255) gAACAACGCGGCGTCGCGCTGCTCATTGTACTCATGTTACTGGCGCTCATGGCTGCTCTGGCAGCAGACATGACGCTCAGTTTTCACAGCCAGCTTCAGCGAACCCGCCAGGTAAACCATCATCTGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGAC‑AGACAGACAACGTTGCAGCAGAA‑CTGGGCACAGcacca > 1:935362/1‑235 (MQ=255) gAACAACGCGGCGTCGCGCTGCTCATTGTACTCATGTTACTGGCGCTCATGGCTGCTCTGGCAGCAGACATGACGCTCAGTTTTCACAGCCAGCTTCAGCGAACCCGCCAGGTAAACCATCATCTGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAACCTCCACCAGGACCGTTAAGATAAAGACAACACAAACCCCATT‑CAGCAGTACCTGGGAACAGcaca > 2:523340/1‑236 (MQ=255) cgcgGCGTCGCGCTGCTCATTGTACTCATGTTACTGGCGCTCATGGCTGCTCTGGCAGCAGACATGACGCTCAGTTTTCACAGCCAGCTTCAGCGAACCCGCCAGGTAAACCATCATCTGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTGAAGATAACGAC‑AGACAGACCACGTTGCAGCAGTA‑CTGGGCACAGc > 2:891159/1‑229 (MQ=255) cgcgGCGTCGCGCTGCTCATTGTACTCATGTTACTGGCGCTCATGGCTGCTCTGGCAGCAGACATGACGCTCAGTTTTCACAGCCAGCTTCAGCGAACCCGCCAGGTAAACCATCATCTGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTGAAGATAACGAC‑AGACAGACCACGTTGCAGCAGTA‑CTGGGCACAGc < 1:891159/229‑1 (MQ=255) ggctgctAATTGTACTCATTTTACTGGCCCTAATGGCTGCTCTGGCAGCAGACATGACGCTCAGTTTTCACAGCCAGCTTCAGCGAACCCGCCAGGTAAACCATCATCTGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGAC‑AGACAGACCACGTTGCAGCAGTA‑CTGGGCACAGCCACAACAGTTGCAGCTGGaa < 2:735897/238‑1 (MQ=255) cgcTGCTCATTGTACTCATGTTACTGGCGCTCATGGCTGCTCTGGCAGCAGACATGACGCTCAGTTTTCACAGCCAGCTTCAGCGAACCCGCCAGGTAAACCATCATCTGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGAC‑AGACAGACCACGTTGCAGCAGTA‑CTGGGCACAGCCACAACAGTTGCAGCTGGaa < 2:765038/239‑1 (MQ=255) ctCATTGTACTCATGTTACTGGCGCTCATGGCTGCTCTGGCAGCAGACATGACGCTCAGTTTTCACAGCCAGCTTCAGCGAACCCGCCAGGTAAACCATCATCTGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGAC‑AGACAGACCACGTTGCAGCAGTA‑CTGGGCACAGCCACAACAGTTGCAGCTGGAAGATg > 1:735897/1‑238 (MQ=255) tGTACTCATGTTACTGGCGCTCATGGCTGCTCTGGCAGCAGACATGACGCTCAGTTTTCACAGCCAGCTTCAGCGAACCCGCCAGGTAAACCATCATCTGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGAC‑AGACAGACCACGTTGCAGCAGTA‑CTGGGCACAGCCACAACAGTTGCAGCTGGAAGATGGCAATa < 1:523340/239‑1 (MQ=255) tccTCATGGTACTGGCCCTAATGGCTGCCCTGGCAGCAGACATGACGCTCAGTTTTCCATGCCAGCTTCAGCGAACCCGCCAGGTAAACCATCATCTGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGAC‑AGACAGACCACGTTGCAGCAGTA‑CTGGGCACAGCCACAACAGTTGCAGCTGGAAGa < 2:482897/227‑1 (MQ=255) tCATGTTACTGGCGCTCATGGCTGCTCTGGCAGCAGACATGACGCTCAGTTTTCACAGCCAGCTTCAGCGAACCCGCCAGGTAAACCATCATCTGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGAC‑AGACAGACCACGTTg < 2:449955/185‑1 (MQ=255) tCATGTTACTGGCGCTCATGGCTGCTCTGGCAGCAGACATGACGCTCAGTTTTCACAGCCAGCTTCAGCGAACCCGCCAGGTAAACCATCATCTGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGAC‑AGACAGACCACGTTg > 1:449955/1‑185 (MQ=255) tGTTACTGGCGCTCATGGCTGCTCTGGCAGCAGACATGACGCTCAGTTTTCACAGCCAGCTTCAGCGAACCCGCCAGGTAAACCATCATCTGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCa > 2:402324/1‑148 (MQ=255) tGTTACTGGCGCTCATGGCTGCTCTGGCAGCAGACATGACGCTCAGTTTTCACAGCCAGCTTCAGCGAACCCGCCAGGTAAACCATCATCTGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCa < 1:402324/148‑1 (MQ=255) tGTTACTGGCGCTCATGGCTGCTCTGGCAGCAGACATGACGCTCAGTTTTCACAGCCAGCTTCAGCGAACCCGCCAGGTAAACCATCATCTGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGAC‑AGACAGACCACGTTGCAGCAGTA‑CTGGGCACAGCCACAACAGTTGCAGCTGGAAGATGGCAATACAGTGAAg > 2:162830/1‑239 (MQ=255) tACGGGCCCGCAGGGCTGCTCTGGCAGCAGACATGACGCTCAGTTTGCACAGCCAGCTTCAGCAAACCCGCCAGGTAAACCATCATCTGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGAC‑AGACAGACCACGTTGCAGCAGTA‑CTGGGCACAGCCACAACAGTTGCAGCTGGAAGATGGCAATACAGTGAAGTgg < 2:54439/239‑1 (MQ=255) aCTGGCGCTCATGGCTGCTCTGGCAGCAGACATGACGCTCAGTTTTCACAGCCAGCTTCAGCGAACCCGCCAGGTAAACCATCATCTGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGAC‑AGACAGACCACGTTGCAGCAGTA‑CTGGGCACAGCCACAACAGTTGCAGCTGGAAGATGGCAATACa > 1:482897/1‑229 (MQ=255) agACATGACGCTCAGTTTTCACAGCCAGCTTCAGCGAACCCGCCAGGTAAACCATCATCTGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGAC‑AGACAGACCACGTTGCAGCAGTA‑CTGGGCACAGCCACAACAGTTGCAGCTGGAAGATGGCAATACAGTGAAGTGGCA‑GTTACGCGATGCCCAGCACTGTTTTa > 1:105674/1‑239 (MQ=255) gACATGACGCTCAGTTTTCACAGCCAGCTTCAGCGAACCCGCCAGGTAAACCATCATCTGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGAC‑AGACAGACCACGTTGCAGCAGTA‑CTGGGGACAGCCACAAAAGCTGCAGCTGGAAGATGGCAATACAGTGAATGGGCACGTAACG‑GCTGCCCACCACGGTTTTaa > 2:557356/1‑239 (MQ=255) ccagcTTCAGCGAACCCGCCAGGTAAACCATCATCTGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGAC‑AGACAGACCACGTTGCAGCAGTA‑CTGGGCACAGCCACAACAGTTGCAGCTGGAAGATgg < 1:911397/171‑1 (MQ=255) ccagcTTCAGCGAACCCGCCAGGTAAACCATCATCTGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGAC‑AGACAGACCACGTTGCAGCAGTA‑CTGGGCACAGCCACAACAGTTGCAGCTGGAAGATgg > 2:911397/1‑171 (MQ=255) gCCAGGTAAACCATCATCTGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGAC‑AGACAGACCACGTTGCAGCAGTA‑CTGGGCACAGCCACAACAGTTGCAGCTGGAAGATGGCAATACAGTGAAGTGGCA‑GTTAcgcg > 2:811587/1‑180 (MQ=255) gCCAGGTAAACCATCATCTGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGAC‑AGACAGACCACGTTGCAGCAGTA‑CTGGGCACAGCCACAACAGTTGCAGCTGGAAGATGGCAATACAGTGAAGTGGCA‑GTTAcgcg < 1:811587/180‑1 (MQ=255) tcatcTGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGAC‑AGACAGACCACGTTGCAGCAGTA‑CTGGGcaca > 2:203400/1‑114 (MQ=255) tcatcTGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGAC‑AGACAGACCACGTTGCAGCAGTA‑CTGGGcaca < 1:203400/114‑1 (MQ=255) tcatcTGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGAC‑AGACAGACCACGTTGCAGCAGTA‑CTGGGCACAGCCACAACAGTTGCAGCTGGAAGATGGCAATACAGTGAAGTGGCA‑GTTACGCGATGCCCAGCACTGTTTTAATCTCAATGCGTTAGCAAAAATCTCTGACGACCCGCTGGCTT‑CCCCTGATTTcc < 1:162830/239‑1 (MQ=255) tGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGAC‑agacagac < 2:200230/85‑1 (MQ=255) tGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGAC‑agacagac > 1:200230/1‑85 (MQ=255) tGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGAC‑AGACAGACCACGTTGCAGCAGTA‑CTGGGCACAGCCACAACAGTTGCAGCTGGAATATGGCAATACAGTGAAGTGGCA‑GTTACGCGATGCCCAGCACTGTTTTAATCTCAAAGCGTTAGCAAAAATATCTGACGACCCGCTGGCTTCCCCCTAATTTcccgg > 2:885245/1‑236 (MQ=255) tGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGAC‑AGACAGACCACGTTGCAGCAGTA‑CTGGGCACAGCCACAACAGTTGCAGCTGGAAGATGGCAATACAGTGAAGTGGCA‑GTTACGCGATGCCCAGCACTGTTTTAATCTCAATGCGTTAGCAAAAATCTCTGACGACCCGCTGGCTT‑CCCCTGATTTCCCCGcc < 2:105674/239‑1 (MQ=255) aCTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGAC‑AGACAGACCACGTTGCAGCAGTA‑CTGGGCACAGCCACAACAGTTGCAGCTGGAAGATGGCAATACAGTGAAGTGGCA‑GTTACGCGATGCCCAGCACCGTTTTAATCTCAATGCGTTTGCAAAAATCTCTGACGACCCCCTTGCTT‑TCCCTGATTTCCCCGTCCCGGCATTCAGTGCGCTGCTGa > 2:873626/1‑239 (MQ=255) tGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGAC‑AGACAGACCACGTTGCAGCAGTA‑CTGGGCACAGCCACAACAGTTGCAGCTGGAAGATGGCAATACAGTGAAGTGGCA‑GTTACGCGATGCCCAGCACTGTTTTAATCTCAATGCGTTAGCAAAAATCTCTGACGACCCGCTGGCTT‑CCCCTGATTTCCCCGCCCAGGTATTCAGTGCGCTGCTGAtt < 1:557356/239‑1 (MQ=255) tGGCGGAAAATCTGGCGTTTGCCAGCCTCACCCAGGACGTTAAAGATAACGAC‑AGACAGAGCACGTTGAAGCAGTA‑CTGGGCACAGCCACAACAGTTGCAGCTGGAAGATGGCAATACAGTGAAGTGGCA‑GTTACGCGATGCCCAGCACTGTTTTAATCTCAATGCGTTAGCAAAAATCTCTGACGACCCGCTGGCTT‑CCCCTGATTTCCCCGCCCAGGTATTCAGTGCGCTGCTGAtt < 2:561682/239‑1 (MQ=255) | GTTTTGCATTACCTGAGCAGTTAGCGAGAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACGCGGCGTCGCGCTGCTCATTGTACTCATGTTACTGGCGCTCATGGCTGCTCTGGCAGCAGACATGACGCTCAGTTTTCACAGCCAGCTTCAGCGAACCCGCCAGGTAAACCATCATCTGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGAC‑AGACAGACCACGTTGCAGCAGTA‑CTGGGCACAGCCACAACAGTTGCAGCTGGAAGATGGCAATACAGTGAAGTGGCA‑GTTACGCGATGCCCAGCACTGTTTTAATCTCAATGCGTTAGCAAAAATCTCTGACGACCCGCTGGCTT‑CCCCTGATTTCCCCGCCCAGGTATTCAGTGCGCTGCTGATT > NC_000913/3462855‑3463319 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |