BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3648127	284 (1.450)	42 (0.240)	22/174	6.8	13.9%	noncoding (65/84 nt)	agrA	inactive antisense sRNA
*	?	NC_000913	= 3648363	268 (1.540)	42 (0.240)	22/174	6.8	13.9%	noncoding (70/84 nt)	agrB	antisense sRNA antitoxin for the DinQ toxin
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 284 total aligned reads displayed.

CAATAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGTG  >  NC_000913/3648030‑3648225

cAATAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATAATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACg                                                                                                   <  2:4358741/99‑1 (MQ=255)

 aaTAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGc                                                                                                  >  1:900249/1‑99 (MQ=255)

 aaTAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACACAGGGCTGGAAAGTAAAAAACCGACGc                                                                                                  >  1:698931/1‑99 (MQ=255)

     gTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAg                                                                                              >  1:1528390/1‑99 (MQ=255)

      tttCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGt                                                                                             >  1:586184/1‑99 (MQ=255)

           gTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGtt                                                                                        >  1:509303/1‑99 (MQ=255)

           gTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAACTCGGtt                                                                                        >  2:1098064/1‑99 (MQ=255)

            tATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGttt                                                                                       <  1:447627/99‑1 (MQ=255)

              tGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGttttt                                                                                     >  1:4065413/1‑99 (MQ=255)

               ggTATTAGCATTGTTGCGTTAGATGATGGCTATCTCATACCAGTCATATCCACCAACTTAGGGCTTGAAAGTAAAAAACCGACGCAAAGTCGGtttttt                                                                                    <  1:1420385/99‑1 (MQ=21)

               ggTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGTGCCACCAACTCAGGGCTGGAAAGTAAAACACCGACGCAAAGTCGGtttttt                                                                                    <  2:653749/99‑1 (MQ=255)

               ggTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGtttttt                                                                                    <  1:3555872/99‑1 (MQ=255)

                gTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGttttttt                                                                                   <  1:2185638/99‑1 (MQ=255)

                  agtAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTCAAAATCCGCCGCAAAGTCGGTTTTTTTAc                                                                                 <  2:1907209/97‑1 (MQ=21)

                     aGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATc                                                                              <  1:815954/99‑1 (MQ=255)

                      gCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTTGGTTTTTTTACATcc                                                                             <  2:5010670/99‑1 (MQ=255)

                      gCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATcc                                                                             >  2:1781481/1‑99 (MQ=255)

                         ttGATGCGTTAGATTATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGa                                                                          <  1:964793/99‑1 (MQ=255)

                           gATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGAtt                                                                        <  1:2922082/99‑1 (MQ=255)

                           gATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGAtt                                                                        >  1:536352/1‑99 (MQ=255)

                            aTGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTc                                                                       >  1:3951045/1‑99 (MQ=255)

                            aTGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTc                                                                       <  2:1572723/99‑1 (MQ=255)

                               cGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGa                                                                    >  1:2106227/1‑99 (MQ=255)

                                gTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGAc                                                                   >  1:3031656/1‑99 (MQ=255)

                                gTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGAc                                                                   <  1:1148260/99‑1 (MQ=255)

                                   aGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAGGTCGGTTTTTTTACATCCGGATTCGGACAAg                                                                <  2:5084198/99‑1 (MQ=255)

                                     atgatgGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGc                                                              <  2:3071744/99‑1 (MQ=255)

                                       gatgGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCtt                                                            >  1:4125821/1‑99 (MQ=255)

                                       gatgGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCtt                                                            >  2:743018/1‑99 (MQ=255)

                                       gatgGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGATATTATTACATCCGGATTCGGACAAGGCtt                                                            >  1:4443145/1‑99 (MQ=255)

                                       gatgGCTATCTCACTCCAGTCAGAGCCACCAACTCAGCGCTGGAATGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCtt                                                            >  1:4671680/1‑99 (MQ=255)

                                        atgGCTATCTCACTCCAGTCGGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTa                                                           >  1:3512966/1‑99 (MQ=255)

                                          ggCTATCTCACTCCAGTCAGAGCCACCAAGTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAat                                                         <  1:4810486/99‑1 (MQ=255)

                                          ggCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCTACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAat                                                         <  1:5091159/99‑1 (MQ=255)

                                          ggCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAat                                                         >  2:1445930/1‑99 (MQ=255)

                                          ggCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAat                                                         <  1:1094408/99‑1 (MQ=255)

                                          ggCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCAGACAAGGATTAat                                                         >  1:192668/1‑99 (MQ=255)

                                            cTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAatat                                                       <  2:3631029/99‑1 (MQ=255)

                                              aTCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGTAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGa                                                     <  2:4128481/99‑1 (MQ=255)

                                              aTCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGa                                                     >  1:2274198/1‑99 (MQ=255)

                                              aTCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGa                                                     <  2:1734071/99‑1 (MQ=255)

                                                   aCTCCATTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATg                                                <  1:2462882/99‑1 (MQ=255)

                                                    cTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACCAGCCTTCATATCACGATGa                                               >  2:2033186/1‑99 (MQ=17)

                                                    cTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGa                                               <  1:1790683/99‑1 (MQ=255)

                                                     tCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGAc                                              >  1:392721/1‑99 (MQ=255)

                                                      ccAGTCAGAGGCACCAACTCAGGGCCCGAAAGTAAAAAACCTACGCATAGTCGGTTTTGTTACATCCGGATTCGGACAAGGCTTAATATGACGATGccc                                             <  2:326685/99‑1 (MQ=255)

                                                        aGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAATACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCa                                           <  2:5106628/99‑1 (MQ=255)

                                                        aGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCa                                           >  1:4034251/1‑99 (MQ=255)

                                                        aGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCa                                           >  1:130888/1‑99 (MQ=255)

                                                        aGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCa                                           <  2:3840262/99‑1 (MQ=255)

                                                        aGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGACGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCa                                           <  1:1021275/99‑1 (MQ=255)

                                                         gTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAg                                          >  2:2501586/1‑99 (MQ=255)

                                                         ctCAGAGTCGCCAATTCGGGGCTGTAAAGTAAAAAACCGTCGCAAAGTCCGTTTTTTTACTTCCTGATTCGTACAAGTCTTAATATCACGATGACCCAg                                          <  2:3245601/98‑1 (MQ=17)

                                                          tCAGAGCCACCAACTCAGGGCTGGAAGGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGt                                         >  1:2427901/1‑99 (MQ=255)

                                                          tCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGt                                         <  2:3737289/99‑1 (MQ=255)

                                                          tCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGt                                         >  1:664928/1‑99 (MQ=255)

                                                              agCCACCAACTCAGGGCTGGAAAGTAAAAAACCGCCGCAAAGTCTGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGaaa                                     <  2:480269/99‑1 (MQ=255)

                                                              agCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGaaa                                     <  1:837172/99‑1 (MQ=255)

                                                                ccaccaACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGt                                   <  2:2740862/99‑1 (MQ=255)

                                                                ccaccaACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGt                                   >  1:3867421/1‑99 (MQ=255)

                                                                  accaACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGtat                                 <  1:2544677/99‑1 (MQ=255)

                                                                  accaACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGtat                                 <  2:356623/99‑1 (MQ=255)

                                                                  accaACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGtat                                 <  2:1346266/99‑1 (MQ=255)

                                                                  accaACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGtat                                 <  2:41090/99‑1 (MQ=255)

                                                                  accaACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGtat                                 <  1:43163/99‑1 (MQ=255)

                                                                   ccaACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCGGATTCGGACAATGCTTAATATGACTCTGCCCCAGTGAAATtata                                >  2:3639804/1‑99 (MQ=18)

                                                                    caACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGtatat                               >  2:2080055/1‑99 (MQ=255)

                                                                    caACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACACAGTGAAAGtatat                               >  1:3725110/1‑99 (MQ=255)

                                                                    caACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCAGAAACAGCCACGGCTTGGTATGACGATGGCCCAGTGAAAGaatac                               >  2:2430462/1‑98 (MQ=17)

                                                                      aCTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATaa                             <  1:1275300/99‑1 (MQ=255)

                                                                       cTCAGGGCTAGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGAACAAGGCTTAATATGACGATGACCCAGAAAAAGTATATaaa                            >  2:2318188/1‑99 (MQ=25)

                                                                         cAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATc                          <  2:2649644/99‑1 (MQ=255)

                                                                         cAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATc                          >  1:1360287/1‑99 (MQ=255)

                                                                          aGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGTTTAATATGACGATGCCCCAGTGAAATTATATAAATCg                         >  2:460411/1‑99 (MQ=255)

                                                                           gggCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGt                        <  2:4479024/99‑1 (MQ=255)

                                                                            ggCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTc                       >  2:1689068/1‑99 (MQ=255)

                                                                             gCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCa                      <  2:2869466/99‑1 (MQ=255)

                                                                              cTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCAc                     >  2:4532563/1‑99 (MQ=255)

                                                                                ggAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTg                   <  1:4534596/99‑1 (MQ=255)

                                                                                ggAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTg                   <  1:1747434/99‑1 (MQ=255)

                                                                                 gAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGc                  <  1:2778157/99‑1 (MQ=255)

                                                                                 gAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGc                  <  1:4357785/99‑1 (MQ=255)

                                                                                 gAAAGTAAAAAACCGACGCAAACTCGGTTGTTTTACATCAGGATTCGGACAAGGCTTCATATGACGATTACCCAGTAAAAGTATATAAATAGTCATTGc                  >  2:599729/1‑99 (MQ=25)

                                                                                   aaGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGa                <  1:5177111/99‑1 (MQ=255)

                                                                                   aaGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGa                <  1:3301722/99‑1 (MQ=255)

                                                                                   aaGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGa                >  2:927459/1‑99 (MQ=255)

                                                                                    aGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGat               <  2:189707/99‑1 (MQ=255)

                                                                                      tAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGatat             >  2:1493181/1‑99 (MQ=255)

                                                                                       aaaaaaCCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGatata            <  1:183112/99‑1 (MQ=255)

                                                                                        aaaaaCCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAACGTATATAAATCGTCACTGCGatatat           >  2:2589742/1‑99 (MQ=255)

                                                                                        aaaaaCCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGatatat           >  2:429310/1‑99 (MQ=255)

                                                                                        aaaaaCCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGatatat           >  1:2622678/1‑99 (MQ=255)

                                                                                        aaaaaCCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGatatat           >  1:417159/1‑99 (MQ=255)

                                                                                        aaaaaCCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCCTAATATGACGATGACCCACCGAAAGTATACAAATCGTCCCTTCGatacat           >  2:35187/1‑99 (MQ=37)

                                                                                         aaaaCCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGAtatata          <  1:2492202/99‑1 (MQ=255)

                                                                                              cGACGCAAAGTCGGTTTTTTTACATGCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGaa     <  1:4900943/99‑1 (MQ=255)

                                                                                              cGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGaa     >  2:4032517/1‑99 (MQ=255)

                                                                                              cGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGaa     >  2:5121761/1‑99 (MQ=255)

                                                                                              cGACGCAAAGTCGGTTTTTTTACATACGGCTTCGAACAAGGCTTAATCTGACGATGAACCAGTGAAAGTATATAAATCGTCACTGCGACATATACCGaa     >  2:1236326/1‑99 (MQ=255)

                                                                                                aCGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGt   >  1:3607952/1‑99 (MQ=255)

CAATAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGTG  >  NC_000913/3648030‑3648225

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.