BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3648127	284 (1.450)	42 (0.240)	22/174	6.8	13.9%	noncoding (65/84 nt)	agrA	inactive antisense sRNA
*	?	NC_000913	= 3648363	268 (1.540)	42 (0.240)	22/174	6.8	13.9%	noncoding (70/84 nt)	agrB	antisense sRNA antitoxin for the DinQ toxin
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 291 total aligned reads displayed.

TTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAA  >  NC_000913/3648266‑3648461

 tAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGt                                                                                                  >  1:4029205/1‑99 (MQ=255)

  aGCCACGTGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTc                                                                                                 <  2:4563608/99‑1 (MQ=255)

   gCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAACGTAAAAAACCGACGCAAAGTCg                                                                                                >  2:3378559/1‑99 (MQ=255)

    ccACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCgg                                                                                               >  1:3633205/1‑99 (MQ=255)

        tGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGCCGGtttt                                                                                           >  2:2440766/1‑99 (MQ=255)

            tAATAGTATTGAGCTGTTAGATAAGATCTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTa                                                                                       <  1:4050647/99‑1 (MQ=255)

            tAATAGTATTGAGATGTTAGATAAGAACTCTCTCTCTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTa                                                                                       <  1:624240/99‑1 (MQ=255)

              aTAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTATTTTTACg                                                                                     >  2:179990/1‑99 (MQ=255)

                 gTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTcc                                                                                  >  2:1123145/1‑99 (MQ=255)

                  tATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCt                                                                                 >  1:4155371/1‑99 (MQ=255)

                    ttGAGCTGTTAGATGAGAACTCTCTCACTCCAGCCAGAGACACCATCTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGa                                                                               <  2:468130/99‑1 (MQ=255)

                    ttGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGTGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGa                                                                               <  2:4696304/99‑1 (MQ=255)

                    ttGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGa                                                                               <  1:3806328/99‑1 (MQ=255)

                      gatcTGTTAGATAATAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGAtt                                                                             <  1:3713629/96‑1 (MQ=255)

                      gAGCTGTTAGATGAGGGCTATCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGAtt                                                                             <  2:2513857/99‑1 (MQ=11)

                      gAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGAtt                                                                             <  2:2753416/99‑1 (MQ=255)

                       aGCTGTTAGATAAGAACTCTCTCACTCCATCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTc                                                                            >  1:2029093/1‑99 (MQ=255)

                       aGCTGTTAGATAAGAACTCTCTCACTCCATCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTc                                                                            >  1:1052241/1‑99 (MQ=255)

                       aGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTc                                                                            >  2:4245482/1‑99 (MQ=255)

                        gCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCa                                                                           <  1:4462136/99‑1 (MQ=255)

                         cTGCTAGATAAGCTCTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGGAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAg                                                                          <  2:4300387/99‑1 (MQ=17)

                          tGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGa                                                                         <  2:138560/99‑1 (MQ=255)

                          tGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGa                                                                         >  1:4150516/1‑99 (MQ=255)

                           gTTAGATAAGAACTCTCTCACTCCAGCCAGAGTCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGAc                                                                        <  2:1328069/99‑1 (MQ=255)

                            ttAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGAcc                                                                       >  1:1861870/1‑99 (MQ=255)

                            ttAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGAcc                                                                       >  2:3898345/1‑99 (MQ=255)

                              aGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGAcctc                                                                     >  1:700382/1‑99 (MQ=255)

                              aGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGAcctc                                                                     >  1:1150778/1‑99 (MQ=255)

                               gATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGAcctcc                                                                    >  2:3397475/1‑99 (MQ=255)

                                 tAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCtt                                                                  <  2:4874696/99‑1 (MQ=255)

                                 tAAGAACTCTCTCACTCAAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTTGGTTTTTTTACGTCCTGATTCAGACCTCCtt                                                                  >  2:3269867/1‑99 (MQ=255)

                                  aaGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCttt                                                                 <  1:2071179/99‑1 (MQ=255)

                                   aGAACTCTCTTTCTCCAGCCAGAGTCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTGTTTACGTCCTGATTCAGACCTCCTTTc                                                                <  1:1480431/99‑1 (MQ=18)

                                   aGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTc                                                                <  1:2759605/99‑1 (MQ=255)

                                      aCTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCaaa                                                             >  2:3484169/1‑99 (MQ=255)

                                       ctctctCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGTTTCAGACCTCCTTTCAAAt                                                            >  2:1444029/1‑99 (MQ=255)

                                        tctctcACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATg                                                           <  2:4034222/99‑1 (MQ=255)

                                          tctcACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGaa                                                         >  1:4221179/1‑99 (MQ=255)

                                          tctcACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGaa                                                         >  1:531242/1‑99 (MQ=255)

                                          tctcACACCAGCCAGAGCCACCAGCTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGCTTTTTTTACGTCCTGATTCAGACCTCCTTCCAAATGaa                                                         <  2:4786235/99‑1 (MQ=18)

                                            tcACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATa                                                       <  2:4112494/99‑1 (MQ=255)

                                            tcACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATa                                                       <  1:2289454/99‑1 (MQ=255)

                                            tcACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATa                                                       >  1:3853885/1‑99 (MQ=255)

                                             cACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAg                                                      <  1:3742640/99‑1 (MQ=255)

                                             cACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAg                                                      >  1:3433156/1‑99 (MQ=255)

                                             cACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAg                                                      <  1:514413/99‑1 (MQ=255)

                                              aCTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGc                                                     >  2:921232/1‑99 (MQ=255)

                                              aCTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGc                                                     >  1:841355/1‑99 (MQ=255)

                                                 ccagccagAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCCAATGAATAGCCaa                                                  <  2:2317445/99‑1 (MQ=255)

                                                 ccagccagAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCaa                                                  <  2:3745474/99‑1 (MQ=255)

                                                  cagccagAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAAc                                                 >  1:4288975/1‑99 (MQ=255)

                                                  cagccagAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAAc                                                 >  1:4550066/1‑99 (MQ=255)

                                                      cagAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCaa                                             >  1:4812511/1‑99 (MQ=255)

                                                        gagCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCaaaa                                           <  1:1755613/99‑1 (MQ=255)

                                                        gagCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTGCAAATGAATAGCCAACTCaaaa                                           >  2:1178810/1‑99 (MQ=255)

                                                          gCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAAtt                                         <  1:3450999/99‑1 (MQ=255)

                                                          gCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAAtt                                         <  1:2432601/99‑1 (MQ=255)

                                                          gCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACCCAAAAtt                                         <  1:5042619/99‑1 (MQ=255)

                                                           tcaccaACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTc                                        <  1:1131317/98‑1 (MQ=255)

                                                           ccaccaACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTc                                        >  1:1244324/1‑99 (MQ=255)

                                                            caccaACTCAGGGCTGGAAAGTAAAACACCCACGCCAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTca                                       <  2:3094671/99‑1 (MQ=255)

                                                            caccaACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTca                                       <  2:3854047/99‑1 (MQ=255)

                                                             accaACTCTTGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTcac                                      <  1:2474503/99‑1 (MQ=255)

                                                             accaACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTcaa                                      >  2:1103894/1‑98 (MQ=255)

                                                              ccaACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTcaca                                     >  1:1344816/1‑99 (MQ=255)

                                                               caACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCacac                                    <  1:1045238/99‑1 (MQ=255)

                                                                   tCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCGCACCTAt                                <  2:5004673/99‑1 (MQ=255)

                                                                     aGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTACTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAACTTCACACCTATTa                              >  2:3697199/1‑99 (MQ=255)

                                                                      gggCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTAc                             <  1:3387809/99‑1 (MQ=255)

                                                                       ggCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTAcc                            <  2:3796611/99‑1 (MQ=255)

                                                                        gCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCt                           >  2:362877/1‑99 (MQ=255)

                                                                         cTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAACTGAATAGCCAACTCAAAATTCACACCTATTACCtt                          >  2:78618/1‑99 (MQ=255)

                                                                           ggAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTcc                        >  2:4329470/1‑99 (MQ=255)

                                                                                gTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGc                   >  2:3935626/1‑99 (MQ=255)

                                                                                gTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGc                   <  1:5076369/99‑1 (MQ=255)

                                                                                 tAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCa                  <  1:4359400/99‑1 (MQ=255)

                                                                                 tAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCa                  >  2:854917/1‑99 (MQ=255)

                                                                                 tAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTAAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCa                  >  1:1697726/1‑99 (MQ=255)

                                                                                   aaaaaCCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACt                >  1:3181752/1‑99 (MQ=255)

                                                                                   aaaaaCCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCATATGCACt                >  1:2617055/1‑99 (MQ=255)

                                                                                   aaaaaCCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAAGGAATAGCCAACTCAAAATTCACACCTCTTACCTTCCGCTGCACt                >  1:4844082/1‑99 (MQ=255)

                                                                                    aaaaCCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACtt               >  1:1293432/1‑99 (MQ=255)

                                                                                    aaaaCCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACtt               >  1:4910792/1‑99 (MQ=255)

                                                                                     aaaCCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTa              <  2:3317802/99‑1 (MQ=255)

                                                                                     aaaCCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTa              <  2:2004368/99‑1 (MQ=255)

                                                                                      aaCCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTac             <  1:4409555/99‑1 (MQ=255)

                                                                                      aaCCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTac             >  2:3174236/1‑99 (MQ=255)

                                                                                      aaCCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTac             <  1:2958592/99‑1 (MQ=255)

                                                                                        ccGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTacac           >  2:2483424/1‑99 (MQ=255)

                                                                                         cGAAGCAAAGTCGGTTTTTTTTTTTTTTTTTTCAAACCTCCTTTCAAATGCATAGCCAACTCAAAATTCACATCTATTACCTTCCTCTGCACTTCcaca          >  2:4362937/1‑99 (MQ=255)

                                                                                          gACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACAt         >  2:1301178/1‑99 (MQ=255)

                                                                                          gACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACAt         >  2:5114355/1‑99 (MQ=255)

                                                                                           aCGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACAtt        >  1:255707/1‑99 (MQ=255)

                                                                                            ctcAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTc       <  2:669065/97‑1 (MQ=255)

                                                                                            cGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTc       <  2:3413354/99‑1 (MQ=255)

                                                                                            cGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTc       <  1:611794/99‑1 (MQ=255)

                                                                                            cGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTc       <  1:4717208/99‑1 (MQ=255)

                                                                                            cGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTc       <  1:3522399/99‑1 (MQ=255)

                                                                                               aaaGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGtt    >  2:2647346/1‑99 (MQ=255)

                                                                                               aaaGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGtt    <  2:537358/99‑1 (MQ=255)

TTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAA  >  NC_000913/3648266‑3648461

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.