BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	1,293,015	IS1 (–) +8 bp	intergenic (‑93/‑505)	hns ← / → tdk	global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 291401	NA (NA)	163 (1.010)	88/196	0.5	97.4%	noncoding (1/768 nt)	IS1	repeat region
*	?	NC_000913	1293015 =	4 (0.030)	163 (1.010)	88/196	0.5	97.4%	intergenic (‑93/‑512)	hns/tdk	global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
*	?	NC_000913	= 1050545	NA (NA)	159 (0.990)	91/196	0.4	97.3%	noncoding (768/768 nt)	IS1	repeat region
*	?	NC_000913	= 1293022	4 (0.030)	159 (0.990)	91/196	0.4	97.3%	intergenic (‑100/‑505)	hns/tdk	global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase

Only 100 of 146 total aligned reads displayed.

GTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATC  >  NC_000913/291306‑291499

gTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGaa                                                                                                 >  1:3827428/1‑99 (MQ=31)

gTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGaa                                                                                                 >  2:3306777/1‑99 (MQ=31)

 tAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAt                                                                                                >  2:2532651/1‑99 (MQ=32)

 tAGCTGAACAGGAGGCACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACCAAATCAGTAAGTTGGCAGCATCACCGAAt                                                                                                <  2:3890756/99‑1 (MQ=12)

    cTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAtttt                                                                                             >  1:2038656/1‑99 (MQ=35)

    cTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAtttt                                                                                             <  1:2540154/99‑1 (MQ=35)

     tGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTc                                                                                            <  1:305766/99‑1 (MQ=37)

     tGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTc                                                                                            <  1:1925915/99‑1 (MQ=37)

      gAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCa                                                                                           <  1:1239021/99‑1 (MQ=38)

       aaCAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAg                                                                                          <  2:244384/99‑1 (MQ=39)

       aaCAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAg                                                                                          <  2:1636120/99‑1 (MQ=39)

        aCAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGc                                                                                         >  1:267380/1‑99 (MQ=40)

          aggaggGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGccc                                                                                       <  2:653579/99‑1 (MQ=255)

            gaggGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCgg                                                                                     >  2:1591578/1‑99 (MQ=255)

            gaggGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCgg                                                                                     >  1:917855/1‑99 (MQ=255)

            gaggGACAGCGGATAGAAACAGAAGCCACTGGAGCACCTCAAAGACATCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCgg                                                                                     >  1:3626035/1‑99 (MQ=255)

              gggACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCCAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTCTCAGCCGGGAt                                                                                   <  2:3903122/99‑1 (MQ=255)

               ggACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATg                                                                                  >  2:1798349/1‑99 (MQ=255)

                 aCAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGtt                                                                                >  1:1902438/1‑99 (MQ=255)

                  cAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGttt                                                                               <  1:1102131/99‑1 (MQ=255)

                    gCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCa                                                                             <  1:288715/99‑1 (MQ=255)

                    gCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCa                                                                             <  1:1416319/99‑1 (MQ=255)

                     cTGATAGAAACGGATGCCACAGGAGCACCTCAAAAACACCATCATGCACTAAGTCAGTCAGTTGGCAGCATCACCTAATTTTCAGCCAGGCTGTTTCAc                                                                            <  2:978276/99‑1 (MQ=14)

                     cTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCAc                                                                            >  1:3858530/1‑99 (MQ=255)

                     cTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCAc                                                                            >  2:1130033/1‑99 (MQ=255)

                        aTAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTa                                                                         <  2:2900562/99‑1 (MQ=255)

                          aGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTAcc                                                                       <  1:188168/99‑1 (MQ=255)

                          aGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTAcc                                                                       >  2:2765615/1‑99 (MQ=255)

                          aGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTAcc                                                                       >  1:2391041/1‑99 (MQ=255)

                           gAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGAGGTTTCACGTACCt                                                                      >  1:3911386/1‑99 (MQ=255)

                            aaaCAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTa                                                                     <  2:3548707/99‑1 (MQ=255)

                               cAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCTCGGATGTTTCACGTACCTATGt                                                                  >  1:3987010/1‑99 (MQ=255)

                                  aaGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGa                                                               >  1:630996/1‑99 (MQ=255)

                                   aGCCACTGGAGCACCTCAAAAACACCACCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGaa                                                              <  2:2967175/99‑1 (MQ=255)

                                     ccACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAata                                                            <  1:149904/99‑1 (MQ=255)

                                        cTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCt                                                         <  1:194062/99‑1 (MQ=255)

                                         tGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTg                                                        <  2:3434964/99‑1 (MQ=255)

                                           gAGCACCTCAAAAACACCATCATACACTAAATCAGTACGTTGGCAGCATCACCGACTTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGc                                                      >  2:2919283/1‑99 (MQ=255)

                                           gAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGc                                                      >  1:3630447/1‑99 (MQ=255)

                                            aGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGcc                                                     >  1:949641/1‑99 (MQ=255)

                                             gCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCg                                                    >  2:2603424/1‑99 (MQ=255)

                                              cACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGa                                                   >  2:3654351/1‑99 (MQ=255)

                                                 cTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATaa                                                >  2:2884580/1‑99 (MQ=255)

                                                 cTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATaa                                                <  2:2269859/99‑1 (MQ=255)

                                                 cTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATaa                                                >  1:602689/1‑99 (MQ=255)

                                                  tCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAg                                               >  1:3436928/1‑99 (MQ=255)

                                                  tCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAg                                               >  1:2792392/1‑99 (MQ=255)

                                                  tCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAg                                               >  2:210867/1‑99 (MQ=255)

                                                   cAAAAACACCATCATACACTAAATCATTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTGCACGTACCTATGTCGAATATCTGGCCGATAAgg                                              <  2:2160451/99‑1 (MQ=255)

                                                   cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAgg                                              <  2:2160747/99‑1 (MQ=255)

                                                   cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAgg                                              >  1:1065670/1‑99 (MQ=255)

                                                     aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGtt                                            <  2:3465721/99‑1 (MQ=255)

                                                       aaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGc                                          <  1:489183/99‑1 (MQ=255)

                                                       aaCACAATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAAAATAAGAAAGATAAGGTTGc                                          <  2:3079358/99‑1 (MQ=25)

                                                            catcatACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATc                                     >  2:1434739/1‑99 (MQ=255)

                                                            catcatACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATc                                     >  1:177115/1‑99 (MQ=255)

                                                            catcatACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATc                                     <  1:790058/99‑1 (MQ=255)

                                                            catcatACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATc                                     <  2:2652805/99‑1 (MQ=255)

                                                              tcatACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGCATATCTGGCCGATAAGGTGGCGGATCga                                   >  2:3198136/1‑99 (MQ=255)

                                                              tcatACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCga                                   >  2:3672315/1‑99 (MQ=255)

                                                              tcatACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCga                                   >  2:3639277/1‑99 (MQ=255)

                                                              tcatACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCga                                   <  2:1640976/99‑1 (MQ=255)

                                                                 tACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGagaa                                >  1:943216/1‑99 (MQ=255)

                                                                  acacTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGagaag                               >  2:3346418/1‑99 (MQ=255)

                                                                  acacTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGagaag                               >  1:1559595/1‑99 (MQ=255)

                                                                   cacTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGagaaga                              >  1:450303/1‑99 (MQ=255)

                                                                    acTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGGGAagag                             >  2:2759966/1‑99 (MQ=255)

                                                                    acTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAagag                             <  2:1510022/99‑1 (MQ=255)

                                                                    acTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAagag                             >  1:2620735/1‑99 (MQ=255)

                                                                     cTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAgg                            >  2:1494581/1‑99 (MQ=255)

                                                                     cTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAgg                            <  2:2356463/99‑1 (MQ=255)

                                                                      tAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGa                           >  2:1848676/1‑99 (MQ=255)

                                                                      tAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGa                           >  1:2799513/1‑99 (MQ=255)

                                                                      tAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGa                           <  1:1826328/99‑1 (MQ=255)

                                                                      tAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGa                           >  1:1691596/1‑99 (MQ=255)

                                                                      tAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGa                           <  2:2717104/99‑1 (MQ=255)

                                                                        aaTCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATg                         >  1:1040673/1‑99 (MQ=255)

                                                                        aaTCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATg                         >  1:3240946/1‑99 (MQ=255)

                                                                           cAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCag                      >  1:1670109/1‑99 (MQ=255)

                                                                            aGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTACACGTACCTATGTCGAATCTCTGCCCGCAAAAGTTGCGGCTCGAGACGCGGATGCaga                     >  2:3857253/1‑99 (MQ=255)

                                                                             gTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCagag                    <  2:87548/99‑1 (MQ=255)

                                                                             gTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCagag                    <  1:342065/99‑1 (MQ=255)

                                                                              tAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCAGAgg                   >  1:4118889/1‑99 (MQ=255)

                                                                              tAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCAGAgg                   >  1:1169431/1‑99 (MQ=255)

                                                                              tAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCAGAgg                   >  1:1963629/1‑99 (MQ=255)

                                                                               aaGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCAGAGGa                  <  2:2998898/99‑1 (MQ=255)

                                                                                aGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCAGAGGaa                 >  1:1519561/1‑99 (MQ=255)

                                                                                 gTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCAGAGGAat                >  2:701182/1‑99 (MQ=255)

                                                                                       agcaTCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCAGAGGAATATCTgg          >  1:1770950/1‑99 (MQ=255)

                                                                                       agcaTCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCAGAGGAATATCTgg          <  2:2498776/99‑1 (MQ=255)

                                                                                       agcaTCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCAGAGGAATATCTgg          >  1:4004228/1‑99 (MQ=255)

                                                                                         caTCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGaa        <  2:696580/99‑1 (MQ=255)

                                                                                           tCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGc      >  2:1191198/1‑99 (MQ=255)

                                                                                           tCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGc      >  1:2796601/1‑99 (MQ=255)

                                                                                           tCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGc      >  2:3560080/1‑99 (MQ=255)

                                                                                            cACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGCATCGAGAAGAGGATGAAGATGAATATCTGGAAGCa     >  1:392521/1‑99 (MQ=255)

                                                                                             aCCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCaa    >  1:2913284/1‑99 (MQ=255)

                                                                                              ccGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAAt   >  2:3801221/1‑99 (MQ=255)

                                                                                              ccGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAAt   <  2:768702/99‑1 (MQ=255)

                                                                                               cGATTTTTCAGCCCGGAGGTATCACGTACATATGTGGAATATCTGGCCGATAAGGTGGGGGATCGAGAAGAGGATGGAGATGAATATCTGTAAGCAATc  <  2:1581789/99‑1 (MQ=255)

GTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATC  >  NC_000913/291306‑291499

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.