| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 2,470,173 | IS5 (–) +4 bp | coding (1043‑1046/1332 nt) | gtrS → | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2290113 | NA (NA) | 214 (1.330) | 109/196 | 0.0 | 95.8% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 2470173 = | 9 (0.060) | coding (1043/1332 nt) | gtrS | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage | |||||
| * | ? | NC_000913 | = 2470176 | 9 (0.060) | 172 (1.070) | 96/196 | 0.2 | 94.8% | coding (1046/1332 nt) | gtrS | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
| ? | NC_000913 | = 3131340 | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
Only 100 of 389 total aligned reads displayed.
TGATGATGGTGTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAATCAAACATACTAACGACTATTACTAACATAAAAGACAATATATTTAAAAACATTAGATTTATATCATTGTTATTATTTTTTATTGCTTCTATTTTTATTAGAAATAATAAAATAAAGGCAT > NC_000913/2470075‑2470271 | tgatgaTGGTGTGATGTCTCAGTATAAAGAAAATTATTTAAAAAAAAAAAAAAAACTACACGTAATATATGGAGAATCAAACATACTAACGACTATTAc < 2:620625/99‑1 (MQ=255)actgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccc > 2:349190‑M2/99‑99 (MQ=255) gatgatGGTGTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAATCAAACATACTAACGACTATTACt < 1:1366291/99‑1 (MQ=255) tgatgGTGTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAATCAAACATACTAACGACTATTACTaa < 2:2557387/99‑1 (MQ=255) tgatgGTGTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAATCAAACATACTAACGACTATTACTaa < 1:2841311/99‑1 (MQ=255) tgatgGTGTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAATCAAACATACTAACGACTATTACTaa < 1:2727204/99‑1 (MQ=255) tgatgGTGTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAATCAAACATACTAACGACTATTACTaa > 2:2787950/1‑99 (MQ=255) tcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAc < 1:1570287‑M2/5‑1 (MQ=255) aTGGTGTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAATCAAACATACTAACGACTATTACGAAgg < 2:1843753‑M1/99‑3 (MQ=255) tGGTGTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAATCAAACATACTAACGACTATTACTAAgga > 1:3856053‑M1/1‑96 (MQ=255) gcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACATa > 1:3430182‑M2/92‑99 (MQ=255) cgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACATaa < 1:1838423‑M2/9‑1 (MQ=255) tgtgATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAATCAAACATACTAACGACTATTACTAAggaagg > 1:1747138‑M1/1‑93 (MQ=255) tgATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAATCAAACATACTAACGACTATTACTAAggaaggtg < 1:2295844‑M1/99‑9 (MQ=255) ggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACATAAAAGa < 1:3065188‑M2/13‑1 (MQ=255) gttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACATAAAAGACAata > 2:2644965‑M2/82‑99 (MQ=255) ttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatcttagatcagggacttcttcgcaccttccCTCACATAAAAGACAatat > 2:12058‑M2/81‑99 (MQ=255) tgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACATAAAAGACAatata < 1:2588019‑M2/20‑1 (MQ=255) cAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAATCAAACATACTAACGACTATTACTAAggaaggtgcgaataag < 2:2902185‑M1/99‑17 (MQ=255) gatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACATAAAAGACAatatat > 2:6595‑M2/79‑99 (MQ=255) gatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACATAAAAGACAatatat < 1:1213191‑M2/21‑1 (MQ=255) gatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACATAAAAGACAatatat < 1:166149‑M2/21‑1 (MQ=255) tgactcatgatgaaccctgttctatggctccagatgacaaacatgatgtcatatcaggggctggttcgcgccttccCTAACATAAAAGacaatataggt < 2:512428‑M2/23‑4 (MQ=255) gactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACATAAAAGACAATATATTTa < 2:1147412‑M2/24‑1 (MQ=255) taAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAATCAAACATACTAACGACTATTACTAAggaaggtgcgaataagcgggg > 1:2245024‑M1/1‑78 (MQ=255) tcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACATAAAAGACAATATATTTaaaa > 1:2191483‑M2/73‑99 (MQ=255) aaGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAATCAAACATACTAACGACTATTACTAAggaaggtgcgaataagcggggaa > 2:1676426‑M1/1‑76 (MQ=255) gAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAATCAAACATACTAACGACTATTACTAAggaaggtgcgaataagcggggaaat > 2:1285963‑M1/1‑74 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACATAAAAGACAATATATTTAAAAACa > 2:2366116‑M2/70‑99 (MQ=255) aaaaTTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAATCAAACATACTAACGACTATTACTAAggaaggtgcgaataagcggggaaatt < 2:3626492‑M1/99‑27 (MQ=255) gatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACATAAAAGACAATATATTTAAAAACAt > 1:372754‑M2/69‑99 (MQ=255) aaaTTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAATCAAACATACTAACGACTATTACTAAggaaggtgcgaataagcggggaaattc < 1:299457‑M1/99‑28 (MQ=255) attattTCCATGTATATAAAAAACTACACGTAATATATGGAGAATCAAACATACTAACGACTATTACTAAggaaggtgcgaataagcggggaaattctt > 2:3535170‑M1/1‑70 (MQ=255) ttattTCCATGTATATAAAAAACTACACGTAATATATGGAGAATCAAACATACTAACGACTATTACTAAggaaggtgcgaataagcggggaaattcttc < 2:2482420‑M1/99‑31 (MQ=255) gaaccctgttctatggctccagatgacaaacatgatctcatatcagggacctgttcgccccttccCTAACATAAAAGACAATATATTTAAAAAcatttg > 2:708605‑M2/66‑97 (MQ=255) tattTCCATGTATATAAAAAACTACACGTAATATATGGAGAATCAAACATACTAACGACTATTACTAAggaaggtgcgaataagcggggaaattcttct < 2:1366510‑M1/99‑32 (MQ=255) aaccctgttctatggctccagttgagaaacatgatcgcatatcagggacttgttcgcaccttccCTAACATAAAAGACAATATATTTAAAAACATTAGa < 2:3842707‑M2/35‑1 (MQ=255) ccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACATAAAAGACAATATATTTAAAAACATTAGAtt > 1:2088094‑M2/63‑99 (MQ=255) ccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACATAAAAGACAATATATTTAAAAACATTAGAtt > 2:2216043‑M2/63‑99 (MQ=255) ttCCATGTATATAAAAAACTACACGTAATATATGGAGAATCAAACATACTAACGACTATTACTAAggaaggtgcgaataagcggggaaattcttctcgg < 1:3309501‑M1/99‑35 (MQ=255) tgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACATAAAAGACAATATATTTAAAAACATTAGATTtat > 1:849055‑M2/60‑99 (MQ=255) tgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACATAAAAGACAATATATTTAAAAACATTAGATTtat > 1:3484792‑M2/60‑99 (MQ=255) tGTATATAAAAAACTACACGTAATATATGGAGAATCAAACATACTAACGACTATTACTAAggaaggtgcgaataagcggggaaattcttctcggctgac < 1:1179141‑M1/99‑40 (MQ=255) ataAAAAACTACACGTAATATATGGAGAATCAAACATACTAACGACTATTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagt > 2:957105‑M1/1‑55 (MQ=255) ctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAAAGACAATATATTTAAAAACATTAGATTTATATCATTGtta < 2:1446938‑M2/50‑1 (MQ=255) tccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACATAAAAGACAATATATTTAAAAACATTAGATTTATATCATTGttat > 1:4041575‑M2/49‑99 (MQ=255) aaaaaCTACACGTAATATATGGAGAATCAAACATACTAACGACTATTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcat > 1:1916964‑M1/1‑52 (MQ=255) aaaaaCTACACGTAATATAGGGAGAATCAAACATACTAACGACTATTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcat > 1:3223642‑M1/1‑52 (MQ=255) gatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACATAAAAGACAATATATTTAAAAACATTAGATTTATATCATTGTTattatt < 2:1055760‑M2/55‑1 (MQ=255) tgacaaacatgaactcatatcagagacttgttcacaactttcCTAACATAAAAGACAATATATTTAAAAACATTAGATTTATATCATTGTTATTAtttt < 2:379737‑M2/57‑1 (MQ=255) tACACGTAATATATGGAGAATCAAACATACTAACGACTATTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt < 2:1520069‑M1/99‑54 (MQ=255) acacGTAATATATGGAGAATCAAACATACTAACGACTATTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcattt < 1:1944566‑M1/99‑55 (MQ=255) ccaaacatgatctcatatcagggacttgttcgcactttccCTAACATAAAAGACAATATATTTAAAAACATTAGATTTATATCATTGTTATTAtttttt < 2:2939933‑M2/59‑1 (MQ=255) acaaacatgatctcatatcagggacttgttcgcaccttccCTAACATAAAAGACAATATATTTAAAAACATTAGATTTATATCATTGTTATTAtttttt < 1:2930799‑M2/59‑1 (MQ=255) acaaacatgatctcatatcagggacttgttcgcacctgccCTAACATAAAAGACAATATATTTAAAAACATTAGATTTATATCATTGTTATTAtttttt < 2:3681447‑M2/59‑1 (MQ=255) cGTAATATATGGAGAATCAAACATACTAACGACTATTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttctt < 2:1744944‑M1/99‑58 (MQ=255) aaacatgatctcatatcagggacttgttcgcaccttccCTAACATAAAAGACAATATATTTAAAAACATTAGATTTATATCATTGTTATTATTTTTTAt > 1:545680‑M2/39‑99 (MQ=255) aaacatgatctcatatcagggacttgttcgcaccttccCTAACATAAAAGACAATATATTTAAAAACATTAGATTTATATCATTGTTATTATTTTTTAt > 1:463688‑M2/39‑99 (MQ=255) gTAATATATGGAGAATCAAACATACTAACGACTATTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttc > 1:3136980‑M1/1‑41 (MQ=255) gTAATATATGGAGAATCAAACATACTAACGACTATTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttc > 1:692620‑M1/1‑41 (MQ=255) aacatgatcgcatatcaggaacttgttcgcaccttctCTAACATAAAAGACAATATATTTAATAACATTAGATTTATATCATTGTTATTATTTTTTAtt < 2:2592206‑M2/62‑1 (MQ=255) tgagctcatatcagggacttgttcgcacctttcCTAACATAAAAGACAATATATTTAAAAACATTAGATTTATATCATTGTTATTATTTTTTATTGCtt < 2:1894356‑M2/66‑1 (MQ=255) ctcatatcagggacttgttcgcaccttccCTAACATAAAAGACAATATATTTAAAAACATTAGATTTATATCATTGTTATTATTTTTTATTGCTTCTAt > 2:3050876‑M2/30‑99 (MQ=255) ggAGAATCAAACATACTAACGACTATTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgag > 2:3158185‑M1/1‑32 (MQ=255) agaATCAAACATACTAACGACTATTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagcc < 1:595689‑M1/99‑70 (MQ=255) tatcagggacttgttcgcaccttccCTAACATAAAAGACAATATATTTAAAAACATTAGATTTATATCATTGTTATTATTTTTTATTGCTTCTAttttt < 1:2406753‑M2/74‑1 (MQ=255) tatcagggacttgtccgcaccttccCTAACATAAAAGACAATATATTTAAAAACATTAGATTTATATCATTGTTATTATTTTTTATTGCTTCTAttttt < 1:925720‑M2/74‑1 (MQ=255) tcagggacttgttcgcaccttccCTAACATAAAAGACAATATATTTAAAAACATTAGATTTATATCATTGTTATTATTTTTTATTGCTTCTATTTttat < 1:1259091‑M2/76‑1 (MQ=255) tcagggacttgttcgcaccttccCTAACATAAAAGACAATATATTTAAAAACATTAGATTTATATCATTGTTATTATTTTTTATTGCTTCTATTTttat < 1:1004302‑M2/76‑1 (MQ=255) agggacttgttcgcaccttccCTAACATAAAAGACAATATATTTAAAAACATTAGATTTATATCATTGTTATTATTTTTTATTGCTTCTATTTttatta > 1:2436191‑M2/22‑99 (MQ=255) aaaCATACTAACGACTATTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttt < 2:4054208‑M1/99‑76 (MQ=255) ggacttgttcgcaccttccCTAACATAAAAGACAATATATTTAAAAACATTAGATTTATATCATTGTTATTATTTTTTATTGCTTCTATTTTTATTAGa > 2:3283433‑M2/20‑99 (MQ=255) aaCATACTAACGACTATTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttt < 1:144943‑M1/99‑77 (MQ=255) aCATACTAACGACTATTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttttt < 1:1787050‑M1/99‑78 (MQ=255) cATACTAACGACTATTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttc < 2:1940787‑M1/99‑79 (MQ=255) ttgttcgcaccttccCTAACATAAAAGACAATATATTTAAAAACATTAGATTTATATCATTGTTATTATTTTTTATTGCTTCTATTTTTATTAGAaata < 1:2683231‑M2/84‑1 (MQ=255) tgttcgcaccttccCTAACATAAAAGACAATATATTTAAAAACATTAGATTTATATCATTGTTATTATTTTTTATTGCTTCTATTTTTATTAGAaataa > 2:2999862‑M2/15‑99 (MQ=255) aCTAACGACTATTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcc < 1:1071213‑M1/99‑82 (MQ=255) gttcgcaccttccCTAACATAAAAGACAATATATTTAAAAACATTAGATTTATATCATTGTTATTATTTTTTATTGCTTCTATTTTTATTAGAaataat > 1:992572‑M2/14‑99 (MQ=255) cTAACGGCAATTACTAAggaaggtgcgattaagcggggaaattcttctcggctgagtcagtcatttcatttcttcatgtttgagccgattttttctccc > 2:3343286‑M1/1‑17 (MQ=255) cTAACGACTATTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctccc > 1:1476733‑M1/1‑17 (MQ=255) tAACGACTATTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccg > 1:3573590‑M1/1‑16 (MQ=255) tAACGACTATTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccg > 1:4101158‑M1/1‑16 (MQ=255) tcgcaccttccCTAACATAAAAGACAATATATTTAAAAACATTAGATTTATATCATTGTTATTATTTTTTATTGCTTCTATTTTTATTAGAAAtaataa < 2:831873‑M2/88‑1 (MQ=255) tcgcaccttccCTAACATAAAAGACAATATATTTAAAAACATTAGATTTATATCATTGTTATTATTTTTTATTGCTTCTATTTTTATTAGAAAtaataa < 2:3974985‑M2/88‑1 (MQ=255) aaCGACTATTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgt < 2:2768587‑M1/99‑85 (MQ=255) gcaccttccCTAACATAAAAGACAATATATTTAAAAACATTAGATTTATATCATTGTTATTATTTTTTATTGCTTCTATTTTTATTAGAAATaataaaa > 1:2211994‑M2/10‑99 (MQ=255) gACTATTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa < 2:1194203‑M1/99‑88 (MQ=255) caccttccCAAACATAAAAGACAATATATTTAAAAACATTAGATTTTTATCATTGTTATTATTTTTTATTGCTTCTATTTTTATTAGAAATaataaaat > 2:3734786‑M2/9‑99 (MQ=255) accttccCTAACATAAAAGACAATATATTTAAAAACATTAGATTTATATCATTGTTATTATTTTTTATTGCTTCTATTTTTATTAGAAATaataaaata > 1:743561‑M2/8‑99 (MQ=255) aCTATTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat < 1:4135746‑M1/99‑89 (MQ=255) aCTATTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat < 1:1408275‑M1/99‑89 (MQ=255) ttccCTAACATAAAAGACAATATATTTAAAAACATTAGATTTATATCATTGTTATTATTTTTTATTTCTTCTATTTTTATTAGAAATAATAAAATAAAg > 2:3399922‑M2/5‑99 (MQ=255) atcaCTAACATAAAAAAAAAAAAAAATAAAAACATTAGATTTATATCATTGTTATTATTTTTTATTGCTTCTATTTTTATTAGAAATAATAAAATAAAg < 2:4007257/96‑1 (MQ=255) ttACTAAggaaggtgcgaataagcggtgaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgcct > 1:3368819‑M1/1‑7 (MQ=255) cTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttga > 2:469273‑M1/1‑4 (MQ=255) cTAAggaaggtgcgaataagcggggaaattcttctcggatgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttga > 2:877827‑M1/1‑4 (MQ=255) cTAACATAAAAGAGAATATATTTAAAAACATTAGATTTATATCATTGCTATTATTTTTTATTGCTTCTATTTTTATTAGAAATAATAAAATAAAGGCAt > 1:3626358/1‑99 (MQ=255) cTAACATAAAAGACAATATATTTAAAAACATTAGATTTATATCATTGTTATTATTTTTTATTGCTTCTATTTTTATTAGAAATAATAAAATAAAGGCAt > 1:2023282/1‑99 (MQ=255) cTAACATAAAAGACAATATATTTAAAAACATTAGATATATAACATTGTTATTATTTTTTATTGCTTCTATTTTTATTAAAACTAATAAAATAAAGGAAt > 2:2117428/1‑99 (MQ=255) | TGATGATGGTGTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAATCAAACATACTAACGACTATTACTAACATAAAAGACAATATATTTAAAAACATTAGATTTATATCATTGTTATTATTTTTTATTGCTTCTATTTTTATTAGAAATAATAAAATAAAGGCAT > NC_000913/2470075‑2470271 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |