New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 282512	24 (0.590)	7 (0.180)	5/282	2.9	21.3%	coding (235/909 nt)	yagE	2‑keto‑3‑deoxy gluconate (KDG) aldolase; CP4‑6 prophage
	?	NC_000913	= 282518	29 (0.750)					coding (241/909 nt)	yagE	2‑keto‑3‑deoxy gluconate (KDG) aldolase; CP4‑6 prophage

GCCGGGCACCGCCGCGCTGATCGACGATCTGATCAAAGCAGGCGTTGACGGCCTGTTCTTCCTGGGCAGCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/282355‑282512 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggtgcCGATCAGCACCGGCACGCGACGATCGACATGATCGATAGCAAAGCGGGCAATGGCTTTACGCTCTTCGGCGCCGAGCTGGGAGAACTCGCCACCGCTGCCCAGGAAGAACAGGCCGTCAACGCCTGCTTTGATCAGATCGTCGATCA  <  NC_000913/282518‑282372                                                                                                                                                                                                                                                                                                                   GCCGGGCACCGCCGCGCTGATCGACGATCTGATCAAAGCAGGCGTTGACGGCCTGTTCTTCCTGGGCAGCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTG                                                                                                                                                            >  1:523510/1‑151  CCGGGCACCGCCGCGCTGATCGACGATCTGATCAAAGCAGGCGTTGACGGCCTGTTCTTCCTGGGCAGCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGC                                                                                                                                                           <  1:496824/151‑1                                       CAGGCGTTGACGGCCTGTTCTTCCTGGGCAGCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGCTGATCGGCACCGGCACGCGACGATCGACA                                                                                                                        <  2:316050/149‑1                                                    CCTGTTCTTCCTGGGCAGCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGCTGATCGGCACCGGCACGCGACGATCGACATGATCGATAGCAAAG                                                                                                         <  2:422576/151‑1                                                    CCTGTTCTTCCTGGGCAGCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGCTGATCGGCACCGGCACGCGACGATCGACATGATCGATAGCAAAG                                                                                                         <  2:43546/151‑1                                                                                                CCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGCTGATCGGCACCGGCACGCGACGATCGACATGATCGATAGCAAAGCGGGCAATGGCTTTACGCTCTTCGGCGCCGAGCTGGGAGAACT                                                              <  2:556316/150‑1                                                                                                CCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGCTGATCGGCACCGGCACGCGACGATCGACATGATCGATAGCAAAGCGGGCAATGGCTTTACGCTCTTCGGCGCCGAGCTGGGAGAACT                                                              <  2:61404/150‑1                                                                                                                         CTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGCTGATCGGCACCGGCACGCGACGATCGACATGATCGATAGCAAAGCGGGCAATGGCTTTACGCTCTTCGGCGCCGAGCTGGGAGAACTCGCCACCGCTGCCCAGGAAGAACAG                                     <  1:581498/150‑1                                                                                                                                                      TGCCGGTGCCGATCAGCACCGGCACGCGACGATCGACATGATCGATAGCAAAGCGGGCAATGGCTTTACGCTCTTCGGCGCCGAGCTGGGAGAACTCGCCACCGCTGCCCAGGAAGAACAGGCCGTCAACGCCTGCTTTGATCAGATCGT        >  1:626363/1‑150                                                                                                                                                        CCGGTGCCGATCAGCACCGGCACGCGACGATCGACATGATCGATAGCAAAGCGGGCAATGGCTTTACGCTCTTCGGCGCCGAGCTGGGAGAACTCGCCACCGCTGCCCAGGAAGAACAGGCCGTCAACGCCTGCTTTGATCAGATCGTCGA     <  1:416717/151‑1                                                                                                                                                           GTGCCGATCAGCACCGGCACGCGACGATCGACATGATCGATAGCAAAGCGGGCAATGGCTTTACGCTCTTCGGCGCCGAGCTGGGAGAACTCGCCACCGCTGCCCAGGAAGAACAGGCCGTCAACGCCTGCTTTGATCAGATCGTCGATCA  >  2:635991/1‑151                                                                                                                                                           GTGCCGATCAGCACCGGCACGCGACGATCGACATGATCGATAGCAAAGCGGGCAATGGCTTTACGCTCTTCGGCGCCGAGCTGGGAGAACTCGCCACCGCTGCCCAGGAAGAACAGGCCGTCAACGCCTGCTTTGATCAGATCGTCGATC   <  2:330673/150‑1                                                                                                                                                           GTGCCGATCAGCACCGGCACGCGACGATCGACATGATCGATAGCAAAGCGGGCAATGGCTTTACGCTCTTCGGCGCCGAGCTGGGAGAACTCGCCACCGCTGCCCAGGAAGAACAGGCCGTCAACGCCTGCTTTGATCAGATCGTCGATC   <  2:506036/150‑1                                                                                                                                                           GTGCCGATCAGCACCGGCACGCGACGATCGACATGATCGATAGCAAAGCGGGCAATGGCTTTACGCTCTTCGGCGCCGAGCTGGGAGAACTCGCCACCGCTGCCCAGGAAGAACAGGCCGTCAACGCCTGCTTTGATCAGATCGTCGATC   <  2:618839/150‑1                                                                                                                                                           GTGCCGATCAGCACCGGCACGCGACGATCGACATGATCGATAGCAAAGCGGGCAATGGCTTTACGCTCTTCGGCGCCGAGCTGGGAGAACTCGCCACCGCTGCCCAGGAAGAACAGGCCGTCAACGCCTGCTTTGATCAGATCGTCGATC   <  2:94080/150‑1                                                                                                                                                                                                                                                                                                                   GCCGGGCACCGCCGCGCTGATCGACGATCTGATCAAAGCAGGCGTTGACGGCCTGTTCTTCCTGGGCAGCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/282355‑282512 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggtgcCGATCAGCACCGGCACGCGACGATCGACATGATCGATAGCAAAGCGGGCAATGGCTTTACGCTCTTCGGCGCCGAGCTGGGAGAACTCGCCACCGCTGCCCAGGAAGAACAGGCCGTCAACGCCTGCTTTGATCAGATCGTCGATCA  <  NC_000913/282518‑282372

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.