| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 318807 = | 83 (0.290) | 29 (0.110) | 9/150 | NT | 32.6% | intergenic (+170/‑58) | USA300HOU_RS01425/USA300TCH1516_00272 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1443642 | 42 (0.160) | intergenic (‑215/+138) | USA300TCH1516_01342/brnQ_3 | hypothetical protein/Branched‑chain amino acid transport system 2 carrier protein | |||||
GTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/318901‑318807‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgccGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACGTGTAATTTTACTTTGAAATACT < USA300TCH1516_ALE/1443642‑1443553 GTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGTCGAGACTCCTGAGGGAGCAG < 2:42726/91‑1GTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGCGGGAGCAG > 2:821412/1‑91GTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAG > 2:2818928/1‑91GTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAG > 2:693670/1‑91GTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAG > 1:768641/1‑91GTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAG > 1:5547145/1‑91GTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAG > 2:4780144/1‑91GTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAG > 2:5004942/1‑91GTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAG > 2:4786864/1‑91GTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAG > 1:3958297/1‑91GTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAG > 1:3338012/1‑91GTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAG < 1:3428189/91‑1GTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAG > 2:4795897/1‑91GTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAG < 1:3640623/91‑1GTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCCGAGGGAGCAG > 2:4786865/1‑91 TGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTG < 2:4387086/91‑1 TGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTG < 1:2441072/91‑1 GGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGC > 2:2601175/1‑91 GGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGC > 1:1978399/1‑91 GGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGC < 2:2538125/91‑1 GGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGC > 1:742770/1‑91 GGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGGTGAGACTCCTGAGGGAGCAGTGCC < 2:2810329/91‑1 GGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCC < 1:1950090/91‑1 TTTTTTAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCGTCTCAGCCTCGGTC < 2:1974704/91‑1 TTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCGTCTCAGCCTCGGTC < 1:151987/91‑1 tttaAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCGTCTCAGCCTTGGTCTT < 2:2512011/87‑1 TTTAAAAGTATGTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCGTCTCAGCCTCGGTCTT < 2:5395068/91‑1 ttcAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCGTCTCAGCCTCGGTCTTC < 2:3003311/88‑1 ttaAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCGTCTCAGCCTTGGTCTTC < 1:2339149/88‑1 tttAAGTATTTCAAAGTAAAATTACTTGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCGTCTCAGCCTTGGTCTTCG < 2:5244253/88‑1 taAAAGTATGTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCGTCTCAGCCTCGGTCTTCG < 2:3459970/89‑1 TTAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCGTCTCAGCCTCGGTCTTCG < 2:1165797/91‑1 TTAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCGTCTCAGCCTCGGTCTTCG < 2:1323494/91‑1 TTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCGTCTCAGCCTCGGTCTTCG < 2:3561683/91‑1 TTAAAGTATGTATAAGTAAAATTACATGTTAATACGTGGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCGTCTCAGCCTCGGTCTTCG < 2:3612919/91‑1 cAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCGTCTCAGCCTCGGTCTTCGA < 1:4809452/90‑1 TAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCGTCTCAGCCTCGGTCTTCGA < 2:3262499/91‑1 TAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCGTCTCAGCCTCGGTCTTCGA < 1:1293786/91‑1 TAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCGTCTCAGCCTCGGTCTTCGA < 1:1175161/91‑1 TAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCGTCTCAGCCTCGGTCTTCGA < 2:57969/91‑1 AAAGTATGTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCGTCTCAGCCTCGGTCTTCGAC < 1:1824525/91‑1 AAAGTATGTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCGTCTCAGCCTCGGTCTTCGAC < 2:2538238/91‑1 AAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCGTCTCAGCCTCGGTCTTCGACT < 1:3789061/91‑1 AGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCGTCTCAGCCTCGGTCTTCGACTG < 1:4159662/91‑1 GTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCGTCTCAGCCTCGGTCTTCGACTGG < 1:2219245/91‑1 TTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACT < 1:4352276/91‑1 TTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACT < 1:4352055/91‑1 CAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGC < 2:4540175/91‑1 AAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCT < 2:107847/91‑1 AAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTC < 1:2080176/91‑1 TATTAATGGCGAGACTCCTGAGGGAGCAGTGCCGTCTCAGCCTTGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTA < 1:4091004/91‑1 TGAGGGAGCAGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACGTGTAATTT > 2:1598759/1‑91 TGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACGTGTAATTTTACTTTGAAAT > 2:3886209/1‑91 GCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACGTGTAATTTTACTTTGAAATA > 2:3100268/1‑91 CCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACGTGTAATTTTACTTTGAAATAC > 1:4450618/1‑91 CCGTCTCAGCCTCGGTCTTCGACTCGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACGTGTAATTTTACTTTGAAATAC < 1:5355062/91‑1 CCGTCTCAGCCTCAGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACGTGTAATTTTACTTTGAAATAa < 2:4509428/91‑2 CGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACGTGTAATTTTACTTTGAAATACT < 2:4405722/91‑1 CGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACGTGTAATTTTACTTTGAAATACT < 2:4582446/91‑1 CGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACGTGTAATTTTACTTTGAAATACT < 1:3514878/91‑1 CGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACGTGTAATTTTACTTTGAAATACT < 1:767535/91‑1 CGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACGTGTAATTTTACTTTGAAATACT > 1:1710389/1‑91 GTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/318901‑318807‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgccGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACGTGTAATTTTACTTTGAAATACT < USA300TCH1516_ALE/1443642‑1443553 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |