| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 671666 = | 167 (0.580) | 10 (0.040) | 3/142 | NT | 5.9% | intergenic (+291/‑97) | argS/nth_1 | Arginine‑‑tRNA ligase/Endonuclease III |
| ? | USA300TCH1516_ALE | = 891718 | 170 (0.670) | intergenic (+136/‑603) | USA300HOU_RS04385/rnmV_2 | hypothetical protein/Ribonuclease M5 | |||||
ATTTACACCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATT‑GG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/671764‑671666‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agaaatt‑ggATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTATGTCCCACTCCCTAGATTGA < USA300TCH1516_ALE/891718‑891629 ATTTACACCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTA > 2:4044520/1‑91 TTTACACCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAG > 2:17611/1‑91 TTTACACCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAG > 1:1871673/1‑91 TTTACACCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAG < 1:1774298/91‑1 TTTACACCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAG < 1:3615435/91‑1 TTACACCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGA < 1:5026880/91‑1 TACACCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAA < 1:5330434/91‑1 TACACCCTCCATCTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAA < 2:3743455/91‑1 ACACCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAA < 1:5231108/91‑1 ACACCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAA > 1:1881885/1‑91 ACACCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAA > 1:82599/1‑91 ACACCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAA < 1:2332576/91‑1 ACACCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAA > 1:1360629/1‑91 ACACCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAA > 1:276708/1‑91 ACACCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAA < 1:3803915/91‑1 CACCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAAT > 2:1793912/1‑91 CACCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAAT > 1:3868237/1‑91 CACCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAAT > 1:3108934/1‑91 CACCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAAT > 2:546758/1‑91 ACCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATT < 1:389166/91‑1 ACCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATT > 1:5448811/1‑91 ACCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATT < 1:3676122/91‑1 ACCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATT > 1:5448876/1‑91 ACCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCACACCCCAACTTGCATTGTCTGTAGAAATT > 1:4570412/1‑91 ACCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTAGCGTAAAATTTATTTCGGCGTCCCACCCCAACTTGCATTGTCTGTAGAAATT > 2:1678105/1‑91 CCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATT‑G > 1:911/1‑91 CCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATT‑G < 2:1957650/91‑1 CCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATT‑G > 1:3863155/1‑91 CCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATT‑G > 2:3665760/1‑91 CCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATT‑G > 2:4623162/1‑91 CCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATT‑G > 1:1050737/1‑91 CCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCAACCCCAACTTGCATTGTCTGTAGAAATT‑G > 2:1977140/1‑91 CCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATT‑GG > 2:2055353/1‑91 CCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATT‑GG < 1:5000945/91‑1 CCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATT‑GG > 1:1500548/1‑91 CCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATT‑GGATT < 1:1501119/91‑1 CATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATT‑GGATTC < 2:1836998/91‑1 TTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATT‑GGATTCCC < 1:4917526/91‑1 TTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATT‑GGATTCCC < 2:3372233/91‑1 TTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATT‑GGATTCCCA < 1:1232440/91‑1 GGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGCCGTCCCACCCCAACTTGCATTGTCTGTAGAAATT‑GGATTCCCAATTTCT < 2:5604865/91‑1 tgtGACAGAAATGATATTTTTGCAAAATTCATTTCGCCGTCCCAGCGCAACTTGCATTGTCTGTAGAAATT‑GGATTCCCAATTTCTACAGA < 1:3226031/88‑1 GACAGAAATGATATTTTCGCAAAATTTATTTCGCCGTCCCACCCCAACTTGCATTGTCTGTAGAAATT‑GGATTCCCAATTTCTACAGACAA < 2:4034005/91‑1 ATTTGTTTCGTCGTCCCACCCTAACTTTGAGTGTCTGTAGAAATT‑GGATTCCCAATTTCTACAGACAATGTAAGTTGGGGTGGGACGACGA < 1:3672559/91‑1 CCACCCCAACTTCCATTGCCTGTAGAAATT‑GGAAATCCAATTTCTACAGGCAATGGAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAA > 2:44223/1‑91 CCCCAACTTGCATTGTCTGTAGAAATT‑GGGAATCCAATTTCTACAGACAATGCATGTTGGGGTGGGACGGCGAAATAGATCTTGCGAAAAa > 2:240830/1‑90 CCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATA > 1:5175986/1‑91 AGAAATT‑GGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTATGTCCCACTCCC < 1:1542755/91‑1 AGAAATT‑GGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTATGTCCCACTCCC < 2:3662098/91‑1 AGAAATT‑GGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTATGTCCCACTCCC < 2:2193401/91‑1 AGAAATT‑GGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTATGTCCCACTCCC < 1:2868967/91‑1 AGAAATT‑GGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTATGTCCCACTCCC < 2:4240257/91‑1 AGAAATT‑GGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTATGTCCCACTCCC < 1:4050128/91‑1 AGAAATT‑GGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTATGTCCCACTCCC < 2:4247330/91‑1 AGAAATT‑GGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTATGTCCCACTCCC < 1:1681885/91‑1 AGAAATT‑GGATGCCCAATTTCTACAGACAATGCAAGTTCGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTATGTCCCACTCCC < 2:3581025/91‑1 GAAATT‑GGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAACATATCATTTATGTCCTACTCCCT > 2:4933976/1‑91 GAAATT‑GGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTATGTCCCACTCCCT > 2:4935428/1‑91 GAAATT‑GGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTATGTCCCACTCCCT < 2:1099763/91‑1 GAAATT‑GGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTATGTCCCACTCCCT < 1:503979/91‑1 GAAATT‑GGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTATGTCCCACTCCCT < 2:2298638/91‑1 GAAATT‑GGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATAGCATTTATGTCCCACTCCCT < 2:4114945/91‑1 AAATT‑GGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTATGTCCCACTCCCTA > 2:2632454/1‑91 AAATT‑GGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTATGTCCCACTCCCTA > 2:1603719/1‑91 AAATT‑GGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTATGTCCCACTCCCTA < 1:5644762/91‑1 AAATT‑GGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTATGTCCCACTCCCTA > 1:577998/1‑91 AAATT‑GGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTATGTCCCACTCCCTA > 2:2238749/1‑91 AATT‑GGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAGATATCATTTATGTCCCACTCCCTAG < 2:4719803/91‑1 AATT‑GGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTATGTCCCACTCCCTAG < 1:3197916/91‑1 AATT‑GGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTCATGTCCCACTCCCTAG > 2:5372433/1‑91 ATT‑GGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTCTGCGAAAATATCATTTATGTCCCACTCCCTAGA < 1:5599271/91‑1 TT‑GGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAACTTTTGCGAAAATATCATTTATGTCCCACTCCCTAGAT < 1:255761/91‑1 TT‑GGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTATGTCCCACTCCCTAGAT < 2:1399823/91‑1 TT‑GGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTATGTCCCACTCCCTAGAT < 1:359186/91‑1 TT‑GGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTATGTCCCACTCCCTAGAT < 2:1398093/91‑1 TT‑GGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTATGTCCCACTCCCTAGAT < 2:5124800/91‑1 TT‑GGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTATGTCCCACTCCCTAGAT < 1:2352024/91‑1 TT‑GGATTCCCAAGTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTGTGCGAAAATATCATTTATGTCCCACTCCCTAGAT < 1:346481/91‑1 GGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTATGTCCCACTCCCTAGATTG > 2:1165201/1‑91 GGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTATGTCCCACTCCCTAGATTG > 1:3345086/1‑91 GATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTATGTCCCACTCCCTAGATTGA < 1:4006147/91‑1 GATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTATGTCCCACTCCCTAGATTGA < 2:4146964/91‑1 GATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTATGTCCCACTCCCTAGATTGA < 1:1982076/91‑1 ATTTACACCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATT‑GG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/671764‑671666‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agaaatt‑ggATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTATGTCCCACTCCCTAGATTGA < USA300TCH1516_ALE/891718‑891629 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |