| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 671666 = | 167 (0.580) | 10 (0.040) | 3/142 | NT | 5.9% | intergenic (+291/‑97) | argS/nth_1 | Arginine‑‑tRNA ligase/Endonuclease III |
| ? | USA300TCH1516_ALE | = 891718 | 170 (0.670) | intergenic (+136/‑603) | USA300HOU_RS04385/rnmV_2 | hypothetical protein/Ribonuclease M5 | |||||
Only 100 of 257 total aligned reads displayed.
AGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATATCATTTCTGTCCCACTCCCTCTAAAATGGAGG > USA300TCH1516_ALE/671576‑671756 | agtTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTcc < 1:898527/91‑1 (MQ=34)agtTGACTGAACGAAAATTCGCTTGTAACAAGCTTCTTTCAATTCAAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTcc > 2:5448876/1‑91 (MQ=255) gtTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTccc < 2:2971922/91‑1 (MQ=33) caatctagggagtgggacataaatgatattttcgcaaaatttatttcgtcgtcccaccccaacttgcattgtctgtagaaattgggaatcc > 1:3345086‑M1/90‑91 (MQ=255) ttGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTcccc > 2:2016736/1‑90 (MQ=18) ttGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCa > 2:4383747/1‑91 (MQ=34) tGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCaa > 1:4533186/1‑91 (MQ=34) atctagggagtgggacataaatgatattttcgcaaaatttatttcgtcgtcccaccccaacttgcattgtctgtagaaattgggaatCCaa < 2:1398093‑M1/4‑1 (MQ=255) atctagggagtgggacataaatgatattttcgcaaaatttatttcgtcgtcccaccccaacttgcattgtctgtagaaattgggaatCCaa < 1:359186‑M1/4‑1 (MQ=255) atctagggagtgggacataaatgatattttcgcaaaatttatttcgtcgtcccaccccaacttgcattgtctgtagaaattgggaatCCaa < 2:5124800‑M1/4‑1 (MQ=255) tctagggagtgggacataaatgatattttcgcagaatttatttcgtcgtcccaccccaacttgcattgtctgtagaaattgggaatCCAAt < 1:5599271‑M1/5‑1 (MQ=255) gACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAAt > 2:2941685/1‑91 (MQ=34) gACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCCTCGGGGCCCCAACAAATAGAACTTGGATTCCCAAt > 2:254330/1‑91 (MQ=11) ctagggagtgggacataaatgatatcttcgcaaaatttatttcgtcgtcccaccccaacttgcattgtctgtagaaattgggaatCCAAtt < 2:4719803‑M1/6‑1 (MQ=255) aCTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAAtt > 1:1695185/1‑91 (MQ=34) aCTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAAtt > 1:4633166/1‑91 (MQ=34) aCTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAAtt > 1:5175513/1‑91 (MQ=34) aCTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAAtt > 1:2360996/1‑91 (MQ=34) aCTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAAtt < 1:657260/91‑1 (MQ=34) aCTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAAtt > 1:3248318/1‑91 (MQ=34) tagggagtgggacataaatgatattttcgcaaaatttatttcgtcgtcccaccccaacttgcattgtctgtagaaattgggaatCCAAttt > 2:1603719‑M1/85‑91 (MQ=255) tagggagtgggacataaatgatattttcgcaaaatttatttcgtcgtcccaccccaacttgcattgtctgtagaaattgggaatCCAAttt > 2:2632454‑M1/85‑91 (MQ=255) tagggagtgggacataaatgatattttcgcaaaatttatttcgtcgtcccaccccaacttgcattgtctgtagaaattgggaatCCAAttt > 1:577998‑M1/85‑91 (MQ=255) cTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCACAACAAAGAGAAATTGGATTCCCAAttt < 2:4918206/91‑1 (MQ=21) agggagtgggacataaatgctattttcgcaaaatttatttcgtcgtcccaccccaacttgcattgtctgtagaaattgggaatCCAATTTc < 2:4114945‑M1/8‑1 (MQ=255) gggagtgggacataaatgatattttcgcaaaatttatttcgtcgtcccacccgaacttgcattgtctgtagaaattgggcatCCAATTTCt < 2:3581025‑M1/9‑1 (MQ=255) gggagtgggacataaatgatattttcgcaaaatttatttcgtcgtcccaccccaacttgcattgtctgtagaaattgggaatCCAATTTCt < 1:2868967‑M1/9‑1 (MQ=255) gggagtgggacataaatgatattttcgcaaaatttatttcgtcgtcccaccccaacttgcattgtctgtagaaattgggaatCCAATTTCt < 2:4240257‑M1/9‑1 (MQ=255) gggagtgggacataaatgatattttcgcaaaatttatttcgtcgtcccaccccaacttgcattgtctgtagaaattgggaatCCAATTTCt < 1:1542755‑M1/9‑1 (MQ=255) gAACGAAGATTCGCTTGTAACAAGCTTGTATCAATTCTAGTCAGCCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGGAATCCAATTTCt < 2:2343202/91‑1 (MQ=11) gAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCt < 2:5022320/91‑1 (MQ=34) aCGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTAc > 2:511121/1‑91 (MQ=34) aCGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTAc < 1:2604890/91‑1 (MQ=34) cGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACa > 1:3475318/1‑91 (MQ=34) cGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACa < 2:3915980/91‑1 (MQ=33) gAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAg < 1:1023977/91‑1 (MQ=34) aaaTTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGAc > 1:4896418/1‑91 (MQ=34) aaaTTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGAc > 1:1299872/1‑91 (MQ=34) aaaTTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGAc > 1:942856/1‑91 (MQ=34) aaTTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACa > 1:4031428/1‑91 (MQ=34) aTTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACaa < 2:862860/91‑1 (MQ=33) aTTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACaa < 2:498105/91‑1 (MQ=33) aTTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACaa < 1:543550/91‑1 (MQ=33) aTTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACaa < 2:3873662/91‑1 (MQ=33) ttCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAAt > 1:1995621/1‑91 (MQ=32) tCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATg > 1:1893764/1‑91 (MQ=31) tCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATg > 1:1282143/1‑91 (MQ=31) tCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATg > 2:456702/1‑91 (MQ=31) tCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATg > 1:3432218/1‑91 (MQ=31) aaCCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTa > 2:1101889/1‑91 (MQ=31) aCCTTGCCGGCGTGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCGACGAAATAAATTTTAc > 2:123807/1‑91 (MQ=12) ttGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGat > 2:530628/1‑91 (MQ=35) tGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGata < 2:2245397/91‑1 (MQ=37) tGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGata < 2:321640/91‑1 (MQ=37) tGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGata < 1:162280/91‑1 (MQ=37) ggCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGata < 2:486160/90‑1 (MQ=37) gCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATACATTTTACGataa > 2:3026372/1‑91 (MQ=37) gCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGataa > 2:4392700/1‑91 (MQ=38) gCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGataa > 1:1423033/1‑91 (MQ=38) ccGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGataat < 2:1518375/91‑1 (MQ=38) ccGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGataat > 1:1583342/1‑91 (MQ=39) ccGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGataat < 1:4770675/91‑1 (MQ=39) gcggGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATATc > 1:3789871/1‑91 (MQ=255) cggGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATATCa > 1:3093350/1‑91 (MQ=255) ggggCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATATCAt > 1:2057879/1‑91 (MQ=40) ggggCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATATCAt > 2:2208729/1‑91 (MQ=39) ggggCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATATCAt > 2:3469786/1‑91 (MQ=40) gggCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATATCAtt > 1:3011371/1‑91 (MQ=38) ggCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATATCAttt > 2:2299776/1‑91 (MQ=38) ggCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATATCAttt < 1:1388965/91‑1 (MQ=39) cccAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATATCATTTCTg > 1:1178108/1‑91 (MQ=39) cccAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATATCATTTCTg < 2:1841849/91‑1 (MQ=39) cccAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATATCATTTCTg > 1:1817409/1‑91 (MQ=37) cccAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATATCATTTCTg > 1:772172/1‑91 (MQ=38) cccAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATATCATTTCTg < 1:5269586/91‑1 (MQ=39) cccAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATATCATTTCTg < 1:369532/91‑1 (MQ=39) cccAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATATCATTTCTg > 2:214803/1‑91 (MQ=37) ttgtctgtagaaattgggaatCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGGCGAAATAAATTTTGCGAAAATATCATTTCTGTc < 2:4034005‑M1/70‑1 (MQ=255) caaAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATATCATTTCTGTCCCa > 2:1484360/1‑91 (MQ=38) caaAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATATCATTTCTGTCCCa < 1:5112553/91‑1 (MQ=39) agaaattgggaatCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGGCGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTccc < 2:5604865‑M1/78‑1 (MQ=255) agaAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATATCATTTCTGTCCCACTccc > 1:536375/1‑91 (MQ=39) gaAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATATCATTTCTGTCCCACTCCct < 1:2998237/91‑1 (MQ=40) aaaTTGGATTCCCAATTTCTACAGACAATGCAAGTTGGTGTGGGACGACGAAATAAATTTTACGATAATATCATTTCTGTCCCACTCCctc < 1:4080800/91‑1 (MQ=255) aaaTTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATATCATTTCTGTCCCACTCCctc < 1:4189650/91‑1 (MQ=255) aaaTTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATATCATTTCTGTCCCACTCCctc < 1:2566489/91‑1 (MQ=255) aTTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATATCATTTCTGTCCCACTCCCTCTa < 1:3200112/91‑1 (MQ=255) ttGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATATCATTTCTGTCCTACTCCCTCTaa > 2:5642429/1‑91 (MQ=255) tGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATATCATTTCTGTCCCACTCCCTCTaaa > 1:3892612/1‑91 (MQ=255) tGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATATCATTTCTGTCCCACTCCCTCTaaa > 1:826079/1‑91 (MQ=255) gggaatCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATATCATTTCTGTCCCACTCCCTCTaaaa < 2:3372233‑M1/85‑1 (MQ=255) ggATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATATCATTTCTGTCCCACTCCCTCTaaaa > 2:1099661/1‑91 (MQ=255) gATTCCCGATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAACATCATTTCTGTCCCACTCCCTCTAAAAt < 2:5394282/91‑1 (MQ=255) gATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATATCATTTCTGTCCCACTCCCTCTAAAAt < 2:4653466/91‑1 (MQ=255) gATTCCCAATATCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATATCATTTCTGTCCCACTCCCTCTAAAAt < 2:749144/91‑1 (MQ=255) aTTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATATCATTTCTGTCCCACTCCCTCTAAAATg < 1:2749294/91‑1 (MQ=255) aTTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATATCATTTCTGTCCCACTCCCTCTAAAATg > 2:8108/1‑91 (MQ=255) tCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATATCATTTCTGTCCCACTCCCTCTAAAATGGa > 1:3768923/1‑91 (MQ=255) CCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATATCATTTCTGTCCCACTCCCTCTAAAATGGAgg < 1:5000945‑M1/91‑1 (MQ=255) CCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATATCATTTCTGTCCCACTCCCTCTAAAATGGAgg > 1:1500548‑M1/1‑91 (MQ=255) | AGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATATCATTTCTGTCCCACTCCCTCTAAAATGGAGG > USA300TCH1516_ALE/671576‑671756 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |