| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2440052 | 206 (0.720) | 12 (0.050) | 7/136 | NT | 6.1% | intergenic (+13/+53) | USA300HOU_RS12570/malP | hypothetical protein/PTS system maltose‑specific EIICB component |
| ? | USA300TCH1516_ALE | = 2440086 | 196 (0.800) | intergenic (+47/+19) | USA300HOU_RS12570/malP | hypothetical protein/PTS system maltose‑specific EIICB component | |||||
AATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2439951‑2440052‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagacacatcACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAATT < USA300TCH1516_ALE/2440086‑2439998 agTTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATA < 2:588923/89‑1AATTGTTACGTACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTAGAGATCGTCATCTAAGAGCAAAGCTCGTATATCATAATA < 2:2523998/91‑1AATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATA > 2:5010370/1‑91 ATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAA > 1:1226402/1‑91 ATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAA < 1:2394662/91‑1 ATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAA > 2:3292854/1‑91 ATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAA < 2:5259451/91‑1 TTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAA < 2:3784022/91‑1 TTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAA > 1:2169118/1‑91 TTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAA < 1:2013475/91‑1 TGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAA < 1:2826486/91‑1 TGTTACATACGAGTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAA < 2:3630253/91‑1 TTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGA < 2:5332682/91‑1 TTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGA < 2:2117443/91‑1 TACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGAC > 1:2596986/1‑91 TACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGAC > 1:2597108/1‑91 TACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGAC > 2:4338623/1‑91 TACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGAC > 1:5173550/1‑91 ACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACA < 1:3975741/91‑1 ACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACA > 1:4954188/1‑91 ACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACA < 2:1416590/91‑1 ACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACA > 2:5262399/1‑91 CATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACAC > 2:763728/1‑91 ATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACA > 2:336202/1‑91 ATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACA < 2:3308259/91‑1 ATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACA < 2:5311922/91‑1 ATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACA > 2:634486/1‑91 ATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACA > 2:1942939/1‑91 ATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACA < 2:1911301/91‑1 ATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACA < 2:1842318/91‑1 ATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACA < 2:1814432/91‑1 ATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACA > 1:123750/1‑91 ATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACA > 2:1521575/1‑91 ATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACA < 1:1202257/91‑1 ACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC > 2:981294/1‑91 AGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCACTATACGCAAT > 1:3387805/1‑91 AAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACAT‑‑CTATACGCAATCATT < 1:3374529/91‑1 ATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCACTATACGCAATCATTGT < 1:148863/91‑1 ATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCACTATACGCAACCATTGT < 1:3619303/91‑1 CGACATTCTATCTGCCAATTTTAGATCGTCATCTCTGAGCAAAGCTCGTATATCATAATAAAAGATACATCTCTATACGCAATCATTGTta < 2:4718098/91‑3 GCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTAT < 2:1226402/91‑1 CAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAG < 2:3992032/91‑1 CAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAG < 2:3994893/91‑1 CAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAG < 2:3727066/91‑1 TTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATG < 1:180154/91‑1 AGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTC < 2:3387805/91‑1 CTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATG < 1:140675/91‑1 AAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACG < 1:4796554/91‑1 AAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGA < 1:3062431/91‑1 AAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGA < 1:4016088/91‑1 AAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGA < 2:2797947/91‑1 AAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGA < 2:3349373/91‑1 AAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGAT > 2:1867825/1‑91 AAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGAT < 1:5388829/91‑1 AAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGAT > 2:629797/1‑91 AGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATC < 1:1839957/91‑1 AGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATC < 1:151139/91‑1 AGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATC > 2:2566939/1‑91 AGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATC < 2:528726/91‑1 GACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCT > 2:3298417/1‑91 GACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCT < 2:4559239/91‑1 GACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCT < 2:465909/91‑1 GACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCT < 2:4878620/91‑1 GACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCT < 1:2150990/91‑1 GACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCT < 1:3152802/91‑1 GACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCT < 2:2007947/91‑1 ACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTA < 1:2276530/91‑1 ACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTA > 1:1126995/1‑91 ACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTA > 2:2394261/1‑91 CACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTAT > 1:3513324/1‑91 CACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTAT > 2:2521275/1‑91 CACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTAT > 1:4136998/1‑91 CACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTAT > 1:1938418/1‑91 CACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTAT > 1:620022/1‑91 CACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTAT > 2:626056/1‑91 ACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATA > 1:5398239/1‑91 ACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATA > 2:2879972/1‑91 ACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATA > 1:4797306/1‑91 CATCACTATACGCAATCATTGTAAATGATCATCTTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAA > 1:4198644/1‑91 CATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAA > 2:3821673/1‑91 CATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAA > 2:904181/1‑91 CATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAA > 1:5040281/1‑91 CATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAA > 2:5643344/1‑91 CATCACTATACGCAATCATTGTAAATGATAATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAA > 2:3948728/1‑91 ATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAAT > 2:1655017/1‑91 ATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAAT < 1:825109/91‑1 ATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAAT < 1:4568799/91‑1 ATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAAT > 2:2427266/1‑91 TCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAATT < 2:5408571/91‑1 AATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2439951‑2440052‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagacacatcACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAATT < USA300TCH1516_ALE/2440086‑2439998 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |