| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2440052 | 206 (0.720) | 12 (0.050) | 7/136 | NT | 6.1% | intergenic (+13/+53) | USA300HOU_RS12570/malP | hypothetical protein/PTS system maltose‑specific EIICB component |
| ? | USA300TCH1516_ALE | = 2440086 | 196 (0.800) | intergenic (+47/+19) | USA300HOU_RS12570/malP | hypothetical protein/PTS system maltose‑specific EIICB component | |||||
Only 100 of 401 total aligned reads displayed.
ACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTT > USA300TCH1516_ALE/2439962‑2440142 | aggtatgacagtaccacaagttcgtgaagcatttgaacaaatggttgaggatcaatcgtccgaagataaataatacaaaAAAAGACACATc < 1:1646756‑M1/12‑1 (MQ=255) gATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCta > 2:1332506/1‑91 (MQ=255) ttGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCtata > 1:4786656/1‑91 (MQ=255) gCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACg > 1:2887612/1‑91 (MQ=255) gCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACg < 2:3138395/91‑1 (MQ=255) cAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACga > 1:259958/1‑91 (MQ=255) aCTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACgatg > 1:663493/1‑91 (MQ=255) cTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACgatga < 2:212725/91‑1 (MQ=255) cTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACgatga < 2:3054104/91‑1 (MQ=255) cTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACgatga < 2:4851303/91‑1 (MQ=255) tAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACgatgat < 1:583278/91‑1 (MQ=255) tAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACgatgat > 1:3310519/1‑91 (MQ=255) aGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATc < 1:4838717/91‑1 (MQ=255) aaaTATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATtatacgcaatcatt < 1:3374529‑M1/91‑15 (MQ=255) aaTATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCAtt < 2:2629151/91‑1 (MQ=255) atCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTAc < 2:738945/91‑1 (MQ=255) atCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTAc < 2:3391257/91‑1 (MQ=255) tCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACa < 2:3411799/91‑1 (MQ=255) tCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGATCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACa > 2:2339135/1‑91 (MQ=255) cGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACaa > 1:4960211/1‑91 (MQ=255) cGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACaa > 1:872224/1‑91 (MQ=255) gACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAAt > 1:3549538/1‑91 (MQ=255) aCATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTAGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATg > 2:5486936/1‑91 (MQ=255) cATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGa < 2:1516089/91‑1 (MQ=255) aTTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGAt > 2:5603323/1‑91 (MQ=255) tATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCg < 1:1136367/91‑1 (MQ=255) tATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCg < 2:1811334/91‑1 (MQ=255) tCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGta > 1:3083901/1‑91 (MQ=255) tCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGta > 2:1378608/1‑91 (MQ=255) tCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGta > 2:5074325/1‑91 (MQ=255) gCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAg > 2:3374968/1‑91 (MQ=255) aTTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgat > 2:1655017‑M2/1‑88 (MQ=255) aTTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgat < 1:4568799‑M2/91‑4 (MQ=255) ttATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCactatacgcaatcattgtaaatgatcatcgtatagatg < 1:180154‑M1/91‑39 (MQ=255) ttATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATTATCATTTACAATGATTGCGTATAGTgatg > 2:3948728‑M2/1‑87 (MQ=255) tataGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgt > 1:4797306‑M2/1‑86 (MQ=255) tataGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgt > 2:2879972‑M2/1‑86 (MQ=255) ataGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtg > 1:620022‑M2/1‑85 (MQ=255) aGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtc < 2:465909‑M2/91‑9 (MQ=255) aGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtc > 2:3298417‑M2/1‑83 (MQ=255) gATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtct < 2:528726‑M2/91‑10 (MQ=255) aTCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtctt > 2:629797‑M2/1‑81 (MQ=255) aTCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtctt < 1:5388829‑M2/91‑11 (MQ=255) tCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtcttt < 1:4016088‑M2/91‑12 (MQ=255) gTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCttttt > 2:685820/1‑91 (MQ=255) aTCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTg < 1:1312623/91‑1 (MQ=255) tCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGt < 1:2029022/91‑1 (MQ=255) tATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGtat > 1:5069373/1‑91 (MQ=255) tATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGtat > 1:1198787/1‑91 (MQ=255) aTGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGtatt < 1:981294/91‑1 (MQ=255) tGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGtattt > 1:2448435/1‑90 (MQ=255) gAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGtattat > 2:407249/1‑91 (MQ=255) gAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGtattat < 2:300755/91‑1 (MQ=255) aGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGTGTATAGTGATGTGTCTTTTTTTGTattatt > 1:3843421/1‑91 (MQ=255) gCAAAGCTCGTATATCCTAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTAttattt < 2:1877945/91‑1 (MQ=255) gCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTAttattt > 2:624950/1‑91 (MQ=255) aaaGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTAttatttat > 1:2113390/1‑91 (MQ=255) aGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCt > 2:4405853/1‑91 (MQ=255) gCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCtt > 1:1813024/1‑91 (MQ=255) gCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCtt > 2:4878932/1‑91 (MQ=255) gCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCtt < 2:2561568/91‑1 (MQ=255) cGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCgg < 2:1119108/91‑1 (MQ=255) gTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGa < 1:3188242/91‑1 (MQ=255) gTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATACTGATGTGTCTTTTTTTGTATTATTTATCTTCGGa > 2:2928347/1‑91 (MQ=255) tCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGAtt < 1:19291/91‑1 (MQ=255) cATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTg < 1:5222400/91‑1 (MQ=255) cATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTg > 1:3462510/1‑91 (MQ=255) ataaAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATcc < 2:5194595/91‑1 (MQ=255) ataaAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATcc < 1:4124699/91‑1 (MQ=255) taaAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCt < 2:123124/91‑1 (MQ=255) taaAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCt > 1:3000029/1‑91 (MQ=255) AAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTc < 1:4400486‑M1/91‑1 (MQ=255) AAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTc > 2:2252683‑M1/1‑91 (MQ=255) AAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTc < 1:728215‑M1/91‑1 (MQ=255) AAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTTTTTTATTTATCTTCGGACGATTGATCCTCa < 2:2825398‑M1/91‑1 (MQ=255) AAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCa < 1:1453218‑M1/91‑1 (MQ=255) AAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCa < 1:1027840‑M1/91‑1 (MQ=255) AAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCa > 1:4269330‑M1/1‑91 (MQ=255) AAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCaa < 1:2394929‑M1/91‑1 (MQ=255) aGACACATCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacgatc < 1:151139‑M1/91‑83 (MQ=255) AGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAAc > 1:2774789‑M1/1‑91 (MQ=255) AGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAAc < 1:2327699‑M1/91‑1 (MQ=255) AGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAAc > 2:4571957‑M1/1‑91 (MQ=255) gACACATCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacgatct < 1:2150990‑M1/91‑84 (MQ=255) gACACATCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacgatct < 2:2007947‑M1/91‑84 (MQ=255) GACACATCTCGACGATGATCATTTACAATGTTTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAAcc > 2:972315‑M1/1‑91 (MQ=255) GACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAAcc < 1:4618909‑M1/91‑1 (MQ=255) cacaTCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacgatctat > 2:2521275‑M1/1‑6 (MQ=255) CACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCAt > 2:447082‑M1/1‑91 (MQ=255) caTCactatacgcaatcattgtaaatgatcatcttatagatgtgtcttttattatgatatacgagctttgctcatagatgacgatctataa > 1:4198644‑M1/1‑4 (MQ=255) caTCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacgatctataa > 2:3821673‑M1/1‑4 (MQ=255) caTCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacgatctataa > 2:904181‑M1/1‑4 (MQ=255) aTCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacgatctataat > 2:2427266‑M1/1‑3 (MQ=255) ATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTg < 1:5333138‑M1/91‑1 (MQ=255) tCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacgatctataatt < 2:5408571‑M1/91‑90 (MQ=255) TCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGt > 1:3723676‑M1/1‑91 (MQ=255) cTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtcttttattatgatatacgagctttgctcatagatgacgatctataattg < 2:3994893‑M2/91‑57 (MQ=255) cTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtcttttattatgatatacgagctttgctcatagatgacgatctataattg < 2:3727066‑M2/91‑57 (MQ=255) CTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGtt > 1:5287098‑M1/1‑91 (MQ=255) CTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGtt > 1:5467643‑M1/1‑91 (MQ=255) | ACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTT > USA300TCH1516_ALE/2439962‑2440142 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |