| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2746384 = | 272 (0.950) | 11 (0.040) | 8/140 | NT | 4.8% | intergenic (‑632/+53) | mqo2/acsA_2 | putative malate:quinone oxidoreductase 2/Acetyl‑coenzyme A synthetase |
| ? | USA300TCH1516_ALE | 2746429 = | 200 (0.800) | intergenic (‑677/+8) | mqo2/acsA_2 | putative malate:quinone oxidoreductase 2/Acetyl‑coenzyme A synthetase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATGCTGAAATAGAAAAATGGCAACAACAAAAAGATAGCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGGACTGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2746483‑2746384‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggactgcttTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTGAGTTT > USA300TCH1516_ALE/2746429‑2746518 ATGCTGAAATAGAAAAATGGCAACAACAAAAAGATAGCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACT < 2:1359857/91‑1ATGCTGAAATAGAAAAATGGCAACAACAAAAAGATAGCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACT > 1:4626518/1‑91ATGCTGAAATAGAAAAAAGGCAACAACAAAAAGATAGCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACT < 2:1955128/91‑1 TGCTGAAATAGAAAAATGGCAACAACAAAAAGATAGCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTG > 2:1513783/1‑91 GCTGAAATAGAAAAATGGCAACAACAAAAAGATAGCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGG > 2:96664/1‑91 GCTGAAATAGAAAAATGGCAACAACAAAAAGATAGCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGG > 2:1657081/1‑91 GCTGAAATAGAAAAATGGCAACAACAAAAAGATAGCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGG > 1:3402880/1‑91 CTGAAATAGAAAAATGGCAACAACAAAAAGATAGCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGGA > 1:3461425/1‑91 CTGAAATAGAAAAATGGCAACAACAAAAAGATAGCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGGA > 1:4251955/1‑91 CTGAAATAGAAAAATGGCAACAACAAAAAGATAGCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGGA > 2:3771238/1‑91 CTGAAATAGAAAAATGGCAACAACAAAAAGATAGCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGGA < 1:347509/91‑1 CTGAAATAGAAAAATGGCAACAACAAAAAGATAGCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGGA > 2:4501444/1‑91 CTGAAATAGAAAAATGGCAACAACAAAAAGATAGCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGGA > 2:4501461/1‑91 CTGAAATAGAAAAATGGCAACAACAAAAAGATAGCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGGA > 1:2520057/1‑91 TGAAATAGAAAAATGGCAACAACAAAAAGATAGCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGGAC < 1:1707465/91‑1 TGAAATAGAAAAATGGCAACAACAAAAAGATAGCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGGAC < 1:219938/91‑1 GAAATAGAAAAATGGCAACAACAAAAAGATAGCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGGACT > 1:3183814/1‑91 GAAATAGAAAAATGGCAACAACAAAAAGATAGCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGGACT > 1:1302885/1‑91 GAAATAGAAAAATGGCAACAACAAAAAGATAGCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGGACT > 2:730489/1‑91 GAAATAGAAAAATGGCAACAACAAAAAGATAGCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGGACT > 1:364218/1‑91 AAATAGAAAAATGGCAACAACAAAAAGATATCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACACACTGGACTG > 2:4489473/1‑91 AAATAGAAAAATGGCAACAACAAAAAGATAGCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGGACTG > 1:1225942/1‑91 AATAGAAAAATGGCAACAACAAAAAGATAGCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGGACTGC > 2:491708/1‑91 AATAGAAAAATGGCAACAACAAAAAGATAGCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGGACTGC < 2:2920711/91‑1 AATAGAAAAATGGCAACAACAAAAAGATAGCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGGACTGC < 1:4562127/91‑1 AATAGAAAAATGGCAACAACAAAAAGATAGCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGGACTGC < 2:4965271/91‑1 ATAGAAAAATGGCAACAACAAAAAGATAGCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGGACTGCT < 2:354249/91‑1 ATAGAAAAATGGCAACAACAAAAAGATAGCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGGACTGCT < 1:1460118/91‑1 ATAGAAAAATGGCAACAACAAAAAGATAGCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGGACTGCT > 2:3082036/1‑91 ATAGAAAAATGGCAACAACAAAAAGATAGCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGGACTGCT > 2:1024140/1‑91 ATAGAAAAATGGCAACAACAAAAAGATAGCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGGACTGCT < 2:5613113/91‑1 ATAGAAAAATGGCAACAACAAAAAGATAGCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGGACTGCT > 2:1024308/1‑91 ATAGAAAAATGGCAACAACAAAAAGATAGCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGGACTGCT < 1:2212663/91‑1 ATAGAAAAATGGCAACAACAAAAAGATAGCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGGACTGCT < 2:907653/91‑1 TAGAAAAATGGCAACAACAAAAAGATAGCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGGACTGCTT < 1:1925150/91‑1 TAGAAAAATGGCAACAACAAAAAGATAGCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGGACTGCTT < 2:4087950/91‑1 CAGTCCAATGCGTAAGGTATGATGACACGCACTGGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGCTGCCATTTTTCTATTT > 2:5367516/1‑91 GTCCAATGCGTAAGGTATGATGATACGCACTGGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCA > 1:1004484/1‑91 TCCAATGCGTAAGGTATGATGATACGCACTGGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAG > 1:3997767/1‑91 CAATGCGTAAGGTATGATGATACGCACTGGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCA > 2:5632745/1‑91 GCGTAAGGTATGATGATACGCACTGGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTC > 1:3368082/1‑91 CGTAAGGTATGATGATACGCACTGGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCG > 2:3059266/1‑91 CGTAAGGTATGATGATACGCACTGGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCG > 2:80826/1‑91 CGTAAGGTATGATGATACGCACTGGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCG > 2:81946/1‑91 GTAAGGTATGATGATACGCACTGGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGT > 2:5215483/1‑91 GTAAGGTATGATGATACGCACTGGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGT > 2:3011424/1‑91 AGGTATGATGATACGCACTGGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGT > 1:3363308/1‑91 TGGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTA > 1:1577678/1‑91 TGGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTA < 2:2613671/91‑1 TGGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTA > 2:2305590/1‑91 TGGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTA < 1:2401070/91‑1 GGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTAC > 2:4144353/1‑91 GGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTAC > 1:1844299/1‑91 GGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTAC > 1:1301058/1‑91 GGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTAC > 2:3566520/1‑91 GGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTAC > 1:249098/1‑91 GACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACC < 1:2901475/91‑1 GACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACC > 1:1209252/1‑91 GACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACC < 1:459460/91‑1 GACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACC < 1:2900993/91‑1 GACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACC < 1:2900974/91‑1 GACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACC > 2:2474160/1‑91 ACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCT < 1:5186281/91‑1 ACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCT > 2:4511593/1‑91 CTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTG < 2:374148/91‑1 CTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTG > 1:1672771/1‑91 CTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTG > 1:3826583/1‑91 TGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTGA < 2:1042594/91‑1 TGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTGA < 2:3634353/91‑1 TGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTGA > 1:2004231/1‑91 GCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTGAG < 2:2358570/91‑1 GCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTGAG < 2:503531/91‑1 CTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTGAGT < 1:1822838/91‑1 CTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTGAGT < 2:5153258/91‑1 CTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTGAGT < 1:375736/91‑1 CTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTGAGT < 1:3632979/91‑1 CTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTGAGT > 2:4637367/1‑91 CTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTGAGT > 1:368704/1‑91 CTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTGAGT > 1:1308535/1‑91 CTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTGAGT < 1:949904/91‑1 CTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTGAGT < 2:1865244/91‑1 CTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTGAGT > 2:2473724/1‑91 CTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTGAGT > 2:2468653/1‑91 CTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTGAGT > 2:2468577/1‑91 CTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTGCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTGAGT < 2:4033253/91‑1 CTTTGCTATGTTTATTGATTGCTATATTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTGCCTGAGT > 2:5381700/1‑91 TTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTGAGTT > 2:1921887/1‑91 TTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTGAGTT < 1:1480216/91‑1 TTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTGAGTTT < 2:579227/91‑1 TTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTGAGTTT > 2:863729/1‑91 ATGCTGAAATAGAAAAATGGCAACAACAAAAAGATAGCAATCAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGGACTGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2746483‑2746384‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggactgcttTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTGAGTTT > USA300TCH1516_ALE/2746429‑2746518 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |