| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2751374 | 312 (1.090) | 11 (0.040) | 9/146 | NT | 3.7% | intergenic (‑222/+39) | betA/gbsA | Oxygen‑dependent choline dehydrogenase/Betaine aldehyde dehydrogenase |
| ? | USA300TCH1516_ALE | = 2751393 | 285 (1.090) | intergenic (‑241/+20) | betA/gbsA | Oxygen‑dependent choline dehydrogenase/Betaine aldehyde dehydrogenase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATTGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2751278‑2751374‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgagtgCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCATAG < USA300TCH1516_ALE/2751393‑2751304 ATTGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAG > 1:3933955/1‑91ATTGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAG < 1:2565878/91‑1 TTGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGT < 2:1449358/91‑1 TTGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGT < 1:4617874/91‑1 TTGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGT < 2:4154760/91‑1 TTGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGT < 1:1619758/91‑1 TTGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGT > 1:177261/1‑91 TTGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGT < 1:376262/91‑1 TTGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGT > 1:178929/1‑91 TGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCGAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTG > 1:5481650/1‑91 TGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTG > 1:2781412/1‑91 TGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTG > 2:4880575/1‑91 TGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTG > 1:1960614/1‑91 TGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTG > 2:5493863/1‑91 TGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTG < 1:1777960/91‑1 GTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGA < 1:2512703/91‑1 GTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGA > 2:3070389/1‑91 GTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGA < 1:2763132/91‑1 GTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGA > 1:1589030/1‑91 TACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGT > 1:4263262/1‑91 TACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGT < 1:155319/91‑1 ACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTG > 2:4655424/1‑91 GTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGCCATTGT > 2:3186928/1‑91 TGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGCCATTGTAAGA < 1:1379806/91‑1 TCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGCCATTGTAAGAACACAAGA < 2:2239787/91‑1 TCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGCCATTGTAAGAACACAAGA < 2:2239647/91‑1 CTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGCCATTGTAAGAACACAAGAC < 2:4096874/91‑1 CTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGCCATTGTAAGAACACAAGAC < 2:5273726/91‑1 TATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGCCATTGTAAGAACACAAGACA < 2:1756959/91‑1 GATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGCCATTGTAAGAACACAAGACACTC < 2:1154575/91‑1 ATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGCCATTGTAAGAACACAAGACACTCA < 1:3186928/91‑1 TTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGCCATTGTAAGAACACAAGACACTCACTTTGT < 2:1637021/91‑1 CAAAACACAGTGAGTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACG < 1:4476340/91‑1 TGAGTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAAT > 1:3917973/1‑91 TGAGTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAAT < 1:4393627/91‑1 TGAGTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGAAAAATGAAT > 2:5342835/1‑91 GAGTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATC < 1:1011183/91‑1 AGTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCA > 2:3426642/1‑91 AGTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCA < 1:3541494/91‑1 GTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCAT > 2:4318626/1‑91 GTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCAT < 1:1083284/91‑1 GTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCAT < 2:231742/91‑1 GTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCAT < 1:5179165/91‑1 GTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCAT > 1:4138408/1‑91 GTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCAT > 1:2584357/1‑91 GTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCAT > 1:2584245/1‑91 GTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCAT < 1:1232702/91‑1 TGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCATA > 2:2850351/1‑91 TGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCATA < 1:4384249/91‑1 TGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCATA < 1:2134359/91‑1 GCCATTGTAATAACGCAAGACACTCACTTTGTTATGTATAAGTGGCGAAATGTTGATTGATGATTTGGACTAAAAGCAAAAAGAATCATAG < 1:5173985/91‑1 GCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCATAG > 2:2657591/1‑91 GCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCATAG > 1:5642806/1‑91 GCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCATAG > 1:4137676/1‑91 GCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCATAG < 1:2359057/91‑1 ATTGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2751278‑2751374‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgagtgCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCATAG < USA300TCH1516_ALE/2751393‑2751304 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |