BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2751374	312 (1.090)	11 (0.040)	9/146	NT	3.7%	intergenic (‑222/+39)	betA/gbsA	Oxygen‑dependent choline dehydrogenase/Betaine aldehyde dehydrogenase
*	?	USA300TCH1516_ALE	= 2751393	285 (1.090)	11 (0.040)	9/146	NT	3.7%	intergenic (‑241/+20)	betA/gbsA	Oxygen‑dependent choline dehydrogenase/Betaine aldehyde dehydrogenase
Rejected: Frequency below/above cutoff threshold.

Only 100 of 361 total aligned reads displayed.

TCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAGGTACTCTT  >  USA300TCH1516_ALE/2751303‑2751483

 cTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGc                                                                                           >  2:2657591‑M2/1‑90 (MQ=255)

  tATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGca                                                                                          <  1:4384249‑M2/91‑3 (MQ=255)

   aTGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGcac                                                                                         >  2:4318626‑M2/1‑88 (MQ=255)

   aTGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGcac                                                                                         >  1:4138408‑M2/1‑88 (MQ=255)

     gATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGcactc                                                                                       <  1:1011183‑M2/91‑6 (MQ=255)

      aTTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGcactca                                                                                      >  1:3917973‑M2/1‑85 (MQ=255)

         cATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCt                                                                                   <  1:4019631/91‑1 (MQ=255)

         cATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTAGACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCt                                                                                   <  2:5437968/91‑1 (MQ=255)

          aTTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCtt                                                                                  <  2:957542/91‑1 (MQ=255)

           ttttGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTa                                                                                 <  1:942481/91‑1 (MQ=255)

            tttGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTAt                                                                                <  2:2229389/91‑1 (MQ=255)

             ttGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATc                                                                               <  1:2370613/91‑1 (MQ=255)

               gCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTa                                                                             >  1:4107347/1‑91 (MQ=255)

               gCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTa                                                                             <  2:800593/91‑1 (MQ=255)

               gCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTa                                                                             >  2:5129407/1‑91 (MQ=255)

               gCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTa                                                                             <  2:1829492/91‑1 (MQ=255)

                cGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGcactcactgtgttttg                                                                            <  1:4476340‑M2/91‑17 (MQ=255)

                cGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTaa                                                                            <  2:2774947/91‑1 (MQ=255)

                cGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTaa                                                                            >  1:1434722/1‑91 (MQ=255)

                   ttAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAAttt                                                                         >  1:3725796/1‑91 (MQ=255)

                   ttAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAAttt                                                                         >  1:4960746/1‑91 (MQ=255)

                     atttcAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAAttttt                                                                       >  2:5001512/5‑91 (MQ=255)

                     aGTCCAAAGTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAAttttt                                                                       <  2:1457165/91‑1 (MQ=255)

                      gTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTa                                                                      <  2:4942833/91‑1 (MQ=255)

                         cAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTAttt                                                                   <  2:1420326/91‑1 (MQ=255)

                          aaaTTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTAttcg                                                                  <  2:2869898/91‑3 (MQ=255)

                          aaaTTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTg                                                                  >  1:2935585/1‑91 (MQ=255)

                          aaaTTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTg                                                                  >  1:3264025/1‑91 (MQ=255)

                            aTTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCt                                                                <  2:1225586/91‑1 (MQ=255)

                            aTTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCt                                                                <  1:3537689/91‑1 (MQ=255)

                              tATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTaa                                                              <  1:5532853/91‑1 (MQ=255)

                              tATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTaa                                                              <  2:1504249/91‑1 (MQ=255)

                              tATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTaa                                                              <  1:3070389/91‑1 (MQ=255)

                              tATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTaa                                                              <  1:192249/91‑1 (MQ=255)

                              tATCAACCAACATTTCGCAACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGCCACTCACCTTATCTAATTTTTATTTGcgat                                                              <  2:1674837/91‑4 (MQ=255)

                                tcaatcaaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAAc                                                            >  2:4658433/1‑91 (MQ=255)

                                tcaatcaaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAAc                                                            <  1:5345202/91‑1 (MQ=255)

                                 caatcaaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCATGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAAcc                                                           >  2:2622796/1‑91 (MQ=255)

                                  aatcaaCATTTCGCCACTTATACACAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCa                                                          >  1:5458089/1‑91 (MQ=255)

                                  aatcaaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCa                                                          >  1:129245/1‑91 (MQ=255)

                                  aatcaaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCa                                                          >  2:1165566/1‑91 (MQ=255)

                                  aatcaaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCa                                                          >  2:3756313/1‑91 (MQ=255)

                                   atcaaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCaa                                                         >  1:1649137/1‑91 (MQ=255)

                                    tcaaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAAt                                                        <  1:355020/91‑1 (MQ=255)

                                    tcaaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAAt                                                        <  2:671104/91‑1 (MQ=255)

                                      aaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTc                                                      >  1:1887582/1‑91 (MQ=255)

                                       aCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCa                                                     <  1:565634/91‑1 (MQ=255)

                                       aCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCa                                                     <  1:1127610/91‑1 (MQ=255)

                                        cATTTCGCCACTTATACAAAACACAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCAc                                                    <  2:2263465/91‑1 (MQ=255)

                                         aTTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACt                                                   >  2:5343340/1‑91 (MQ=255)

                                           ttCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATCCACTaa                                                 >  2:5170108/1‑91 (MQ=255)

                                            tCGCCACTTATGCAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCAGTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAAt                                                >  2:5618314/1‑91 (MQ=255)

                                            tCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAAt                                                <  1:1842831/91‑1 (MQ=255)

                                             cGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAAtt                                               >  2:4221232/1‑91 (MQ=255)

                                                cACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATtgtg                                            >  1:1209491/1‑91 (MQ=255)

                                                cACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATtgtg                                            >  2:239084/1‑91 (MQ=255)

                                                  cTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTggc                                          >  2:3170732/1‑90 (MQ=255)

                                                    tataCAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGatt                                        <  2:4443950/91‑1 (MQ=255)

                                                     ataCAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGattt                                       <  1:2449318/91‑1 (MQ=255)

                                                      taCAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGatttg                                      >  2:4003675/1‑91 (MQ=255)

                                                       acaaaacaaaGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGatttgt                                     <  1:4430682/91‑1 (MQ=255)

                                                        caaaacaaaGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGatttgta                                    >  1:1550565/1‑91 (MQ=255)

                                                        caaaacaaaGCGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTAATTGCTAAACCAATTCACTAATTGTGGatttgta                                    <  1:5620295/91‑1 (MQ=255)

                                                               aaGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTa                             <  1:255464/91‑1 (MQ=255)

                                                               aaGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTa                             >  1:4877232/1‑91 (MQ=255)

                                                                agtgagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaa                            >  2:3278452/1‑91 (MQ=255)

                                                                agtgagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaa                            >  2:105852/1‑91 (MQ=255)

                                                                agtgagtgTCTTGTGTTCTTACAATAGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaa                            <  2:2134359/91‑1 (MQ=255)

                                                                 gtgagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaaa                           <  2:3867251/91‑1 (MQ=255)

                                                                  tgagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaaaa                          <  1:2113789/91‑1 (MQ=255)

                                                                  tgagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaaaa                          >  1:3171244/1‑91 (MQ=255)

                                                                  tgagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaaaa                          >  1:3392084/1‑91 (MQ=255)

                                                                  tgagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaaaa                          >  1:5191831/1‑91 (MQ=255)

                                                                  tgagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaaaa                          >  1:670915/1‑91 (MQ=255)

                                                                   gagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAAt                         <  1:4815349/91‑1 (MQ=255)

                                                                    agtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAAtg                        <  1:5090231/91‑1 (MQ=255)

                                                                    agtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAAtg                        <  1:1359556/91‑1 (MQ=255)

                                                                    agtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAAtg                        >  2:1319367/1‑91 (MQ=255)

                                                                     gtgtCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGCTTTGTATTTGTTAAAAtgt                       >  2:2894987/1‑91 (MQ=255)

                                                                       gtCTTGTGTTCTTACAATGGcactcactttgttttgtataagtggcgaaatgttgattgataatttggactaaacgcaaaatgaatcatag                     <  2:4096874‑M2/91‑72 (MQ=255)

                                                                        tCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGtt                    <  1:4518773/91‑1 (MQ=255)

                                                                         cTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAAACAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGttt                   <  2:5220191/91‑1 (MQ=255)

                                                                          ttGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGtttt                  <  2:3372647/91‑1 (MQ=255)

                                                                           tgtgTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTg                 >  2:3714402/1‑91 (MQ=255)

                                                                             tgtTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAAGCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGaa               <  1:4242016/91‑1 (MQ=255)

                                                                                  ttACAATAGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAg          <  2:1960614/91‑1 (MQ=255)

                                                                                   tACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAgg         <  2:2521240/91‑1 (MQ=255)

                                                                                   tACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAgg         <  1:2636982/91‑1 (MQ=255)

                                                                                    aCAATGGcactcactttgttttgtataagtggcgaaatgttgattgataatttggactaaacgcaaaatgaatcatagattatttcattac        >  2:3186928‑M2/1‑7 (MQ=255)

                                                                                    aCAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAGGt        >  1:1055125/1‑91 (MQ=255)

                                                                                     cAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAGGTa       >  1:2328969/1‑91 (MQ=255)

                                                                                     cAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAGGTa       >  2:3388657/1‑91 (MQ=255)

                                                                                     cAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAGGTa       >  2:2032192/1‑91 (MQ=255)

                                                                                      aaTGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAGGTAc      <  2:4123138/91‑1 (MQ=255)

                                                                                      aaTGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAGGTAc      <  2:5307597/91‑1 (MQ=255)

                                                                                      aaTGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAGGTAc      >  1:2388255/1‑91 (MQ=255)

                                                                                        tGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGCTTTGTATTTGTTAAAATGTGTTTAGAAACAACGTActc    >  1:4700287/1‑91 (MQ=255)

                                                                                        tGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAGGTActc    <  2:5551109/91‑1 (MQ=255)

                                                                                        tGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAGGTActc    >  1:2044563/1‑91 (MQ=255)

                                                                                          gCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAGGTACtctt  >  2:3544007/1‑91 (MQ=255)

TCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAGGTACTCTT  >  USA300TCH1516_ALE/2751303‑2751483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.