New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2863041 =	262 (0.910)	15 (0.060)	11/142	NT	5.9%	intergenic (+11/+49)	USA300TCH1516_02707/USA300HOU_RS14670	hypothetical protein/hypothetical protein
	?	USA300TCH1516_ALE	2863075 =	249 (0.980)					intergenic (+45/+15)	USA300TCH1516_02707/USA300HOU_RS14670	hypothetical protein/hypothetical protein

TTGATTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/2863139‑2863041 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggcttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGAT  >  USA300TCH1516_ALE/2863075‑2863164                                                                                                                                                                                               TTGATTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAA                                                                                                    >  1:4576744/1‑91 TTGATTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAA                                                                                                    <  2:2398616/91‑1 TTGATTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAA                                                                                                    <  1:3697255/91‑1  TGATTATATAAAGTCAGAATTCTATGGTCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAAC                                                                                                   <  2:5569747/91‑1  TGATTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAAC                                                                                                   <  2:552706/91‑1  TGATTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAAC                                                                                                   >  1:5453708/1‑91  TGATTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAAC                                                                                                   <  1:2680044/91‑1  TGATTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAAC                                                                                                   <  2:3751709/91‑1  TGATTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAAC                                                                                                   <  1:4120628/91‑1   GATTATATAAAGTNAGAATTCAANGATNACTGNGCTTCGCCATACTGATTTTATAGNACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACG                                                                                                  <  1:180056/91‑1   GATTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACG                                                                                                  <  1:2789569/91‑1    ATTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGG                                                                                                 >  2:4316138/1‑91    ATTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGG                                                                                                 <  2:4665769/91‑1    ATTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGG                                                                                                 <  1:2902817/91‑1    ATTATATAAAGTCAGAATGCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGG                                                                                                 <  2:3045491/91‑1     TTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGC                                                                                                <  1:684594/91‑1     TTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGC                                                                                                <  1:660670/91‑1     TTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGC                                                                                                <  1:2600631/91‑1     TTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGC                                                                                                <  1:86959/91‑1     TTATATAAAGTCAGAATTCAATGATCACTGGGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGC                                                                                                <  2:2068467/91‑1      TATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGCT                                                                                               >  2:2129515/1‑91      TATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGCT                                                                                               <  2:3887140/91‑1        TATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGCTTT                                                                                             >  2:1487943/1‑91        TATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGCTTT                                                                                             <  1:2286188/91‑1        TATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGCTTT                                                                                             >  2:4207369/1‑91        TATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGCTTT                                                                                             >  2:2189709/1‑91        TATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGCTTT                                                                                             >  2:1015584/1‑91        TATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGCTTT                                                                                             <  2:2168878/91‑1         ATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGCTTTT                                                                                            <  2:5418288/91‑1         ATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTAGAAGAGACCAACGGCTTTT                                                                                            >  2:4278126/1‑91                                                          GCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCT                                           >  1:2272096/1‑91                                                            ACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGA                                         >  1:2147880/1‑91                                                            ACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGA                                         >  1:2147150/1‑91                                                                    AAGCCGTAGTTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAGAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATAT                                 >  1:3526301/1‑91                                                                    AAGCCGTAGTTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATAT                                 >  2:2260385/1‑91                                                                    AAGCCGTAGTTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATAT                                 >  1:5304931/1‑91                                                                     AGCCGTAGTTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATA                                >  1:4511803/1‑91                                                                       CCGTAGTTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAAT                              >  2:2094618/1‑91                                                                        CGTAGTTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATCATC                             >  2:968468/1‑91                                                                        CGTAGTTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATC                             >  2:2184327/1‑91                                                                         GTAGTTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCA                            >  1:861053/1‑91                                                                          TAGTTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAA                           >  2:4337327/1‑91                                                                           AGTTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAG                          >  1:2954375/1‑91                                                                            GTTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGA                         >  2:1610887/1‑91                                                                             TTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAG                        >  2:2498084/1‑91                                                                                           ACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACc          >  1:2517359/1‑90                                                                                           ACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACA          >  2:3870831/1‑91                                                                                           ACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACA          >  2:853138/1‑91                                                                                           ACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACA          >  1:1645931/1‑91                                                                                           ACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACA          >  2:853163/1‑91                                                                                           ACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACA          >  2:1170632/1‑91                                                                                           ACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCACTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACA          >  2:5641892/1‑91                                                                                            CGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACAC         <  2:3296706/91‑1                                                                                            CGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACAC         <  1:5574915/91‑1                                                                                            CGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACAC         <  1:2724509/91‑1                                                                                            CGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACAC         >  2:1047900/1‑91                                                                                             GGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACTGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACT        <  1:2616124/91‑1                                                                                             GGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACT        >  1:3846144/1‑91                                                                                             GGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACT        <  1:2644258/91‑1                                                                                             GGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACT        <  2:2344717/91‑1                                                                                             GGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACT        <  1:3941925/91‑1                                                                                             GGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACT        >  1:4624994/1‑91                                                                                              GCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTG       <  1:4382551/91‑1                                                                                              GCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTG       <  1:3911964/91‑1                                                                                              GCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTG       >  1:2989846/1‑91                                                                                              GCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTG       >  2:4497799/1‑91                                                                                              GCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTG       <  1:4896399/91‑1                                                                                              GCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTG       >  2:16187/1‑91                                                                                              GCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTG       >  2:4429953/1‑91                                                                                              GCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTG       <  2:702884/91‑1                                                                                              GCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTG       <  1:1927783/91‑1                                                                                              GCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTG       <  2:3364791/91‑1                                                                                               CTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGA      >  2:98065/1‑91                                                                                               CTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGA      >  1:3384084/1‑91                                                                                               CTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGA      >  2:1932718/1‑91                                                                                               CTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGA      >  1:427914/1‑91                                                                                               CTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGA      <  1:482376/91‑1                                                                                                TTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGAT     >  1:1229075/1‑91                                                                                                TTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGAT     <  1:1404084/91‑1                                                                                                TTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGAT     >  2:919023/1‑91                                                                                                TTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGAT     >  1:256521/1‑91                                                                                                TTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGAT     <  1:5032428/91‑1                                                                                                TTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGAT     <  1:789734/91‑1                                                                                                TTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGAT     >  2:127689/1‑91                                                                                                TTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGAT     <  2:2296811/91‑1                                                                                                TTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGAT     >  2:3811917/1‑91                                                                                                TTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTGTATATAATCAAGAGTATCTTTGGATACACTGAT     <  1:5633836/91‑1                                                                                                 TTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATG    <  1:870771/91‑1                                                                                                 TTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATG    >  1:4455416/1‑91                                                                                                 TTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATG    >  2:3561352/1‑91                                                                                                  TTCTCTGTGCTATAATACCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGA   <  2:3295097/91‑1                                                                                                  TTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGA   <  1:1907535/91‑1                                                                                                  TTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATAAACTGATGA   <  2:4054523/91‑1                                                                                                   TCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGAT  >  1:3393187/1‑91                                                                                                   TCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGAT  <  1:2273397/91‑1                                                                                                   TCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGAT  <  1:1604242/91‑1                                                                                                   TCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGAT  >  2:2391248/1‑91                                                                                                                                                                                               TTGATTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/2863139‑2863041 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggcttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGAT  >  USA300TCH1516_ALE/2863075‑2863164

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.