| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2863041 = | 262 (0.910) | 15 (0.060) | 11/142 | NT | 5.9% | intergenic (+11/+49) | USA300TCH1516_02707/USA300HOU_RS14670 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 2863075 = | 249 (0.980) | intergenic (+45/+15) | USA300TCH1516_02707/USA300HOU_RS14670 | hypothetical protein/hypothetical protein | |||||
Only 100 of 384 total aligned reads displayed.
AGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTAT > USA300TCH1516_ALE/2862952‑2863131 | tcatcagtttatccaaagatactcttgattatataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagaa < 2:4054523‑M1/2‑1 (MQ=255) catcagtgtatccaaagatactcttgattatataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagaaa > 2:3561352‑M1/89‑91 (MQ=255) atcagtgtatccaaagatactcttgattatatacagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagaaaa < 1:5633836‑M1/4‑1 (MQ=255) atcagtgtatccaaagatactcttgattatataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagaaaa > 2:3811917‑M1/88‑91 (MQ=255) atcagtgtatccaaagatactcttgattatataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagaaaa < 1:1404084‑M1/4‑1 (MQ=255) atcagtgtatccaaagatactcttgattatataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagaaaa > 2:919023‑M1/88‑91 (MQ=255) tcagtgtatccaaagatactcttgattatataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagAAAAg < 1:482376‑M1/5‑1 (MQ=255) tcagtgtatccaaagatactcttgattatataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagAAAAg > 1:3384084‑M1/87‑91 (MQ=255) tcagtgtatccaaagatactcttgattatataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagAAAAg > 2:1932718‑M1/87‑91 (MQ=255) cagtgtatccaaagatactcttgattatataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagAAAAGc < 1:4382551‑M1/6‑1 (MQ=255) agtgtatccaaagatactcttgattatataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagAAAAGcc > 1:3846144‑M1/85‑91 (MQ=255) agtgtatccaaagatactcttgattatataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagAAAAGcc < 2:2344717‑M1/7‑1 (MQ=255) gtgtatccaaagatactcttgattatataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagAAAAGCCg < 2:3296706‑M1/8‑1 (MQ=255) gtgtatccaaagatactcttgattatataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagAAAAGCCg < 1:5574915‑M1/8‑1 (MQ=255) gtgtatccaaagatactcttgattatataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagAAAAGCCg < 1:2724509‑M1/8‑1 (MQ=255) tgtatccaaagatactcttgattatataaagtcagaattcagtgatcactgtgcttcgccatactgattttatagcacagagAAAAGCCGt > 2:5641892‑M1/83‑91 (MQ=255) tgtatccaaagatactcttgattatataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagAAAAGCCGt > 1:1645931‑M1/83‑91 (MQ=255) ggtatccaaagatactcttgattatataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagAAAAGCCGt > 1:2517359‑M1/83‑91 (MQ=255) gAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGtt < 1:884690/91‑1 (MQ=35) acCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGtc < 1:3932481/91‑1 (MQ=40) tGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTc > 2:2537752/1‑91 (MQ=255) tGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTc < 2:5074453/91‑1 (MQ=255) ggAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCg > 2:4921372/1‑91 (MQ=255) ggAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCg < 1:4280526/91‑1 (MQ=255) gAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGa > 1:3514392/1‑91 (MQ=255) aaGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGaa > 2:789734/1‑91 (MQ=255) aGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGaaa > 1:1913065/1‑91 (MQ=255) tcttgattatataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagAAAAGCCGTTGGTCTCTTCGAAAc > 2:1610887‑M1/68‑91 (MQ=255) gTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAAc > 1:2397417/1‑91 (MQ=255) gTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAAc < 2:212396/91‑1 (MQ=255) tATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACt > 1:1049863/1‑91 (MQ=255) tATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACgg < 2:3460710/91‑1 (MQ=255) aTGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGC > 2:5319741‑M1/1‑91 (MQ=255) aTGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGC < 2:3478372‑M1/91‑1 (MQ=255) aTGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGC > 1:2925302‑M1/1‑91 (MQ=255) tGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCT < 1:745156‑M1/91‑1 (MQ=255) tGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCT < 1:5085416‑M1/91‑1 (MQ=255) gAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTTACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTT < 2:2448921‑M1/91‑1 (MQ=255) gAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTT < 2:1479880‑M1/91‑1 (MQ=255) gAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTT < 1:841765‑M1/91‑1 (MQ=255) atataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagAAAAGCCGTTGGTCTCTTCGAAACTACGGCtt > 2:2260385‑M1/60‑91 (MQ=255) tttCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTtc > 1:2664349/1‑91 (MQ=255) tttCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTtc < 2:759585/91‑1 (MQ=255) ttCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTGCGGCTTTtct < 1:1891751/91‑1 (MQ=255) aTCGAAGATGATAGACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCtg < 2:3024047/91‑1 (MQ=255) tcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCtgt > 1:2147880‑M1/52‑91 (MQ=255) tCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCtgt < 1:3784170/91‑1 (MQ=255) tCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCtgt > 2:1055651/1‑91 (MQ=255) tCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCtgt > 2:2091073/1‑91 (MQ=255) cGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCtgtg > 1:4447499/1‑91 (MQ=255) cGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCtgtg < 2:1658449/91‑1 (MQ=255) agaattcaatgatcactgtgcttcgccatactgattttatagcacagagAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGc > 1:2272096‑M1/50‑91 (MQ=255) aGATGATAAACTTGTCCAGCTTAATTTTACAATCTAAAGATTTATAATATATCGGTTTGTCATTTCGAAAATACGGGTTTTCTCTGTGCta > 2:459133/1‑91 (MQ=17) aGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCta > 2:4186600/1‑91 (MQ=255) aGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCta > 1:4912463/1‑91 (MQ=255) aGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGC < 2:2894942‑M1/77‑1 (MQ=255) gatgatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCtat > 2:1797695/1‑91 (MQ=255) gatgatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCtat < 1:2042630/91‑1 (MQ=255) atAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATaaaa < 1:313144/91‑1 (MQ=255) atAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATaaaa > 2:4503228/1‑91 (MQ=255) tAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAAt < 1:3470465/91‑1 (MQ=255) aCTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAg < 2:1553573/91‑1 (MQ=255) cTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGt < 2:2634532/91‑1 (MQ=255) gTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATg > 2:4270805/1‑91 (MQ=255) ccAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGc > 1:1155066/1‑91 (MQ=255) ccAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGc > 2:2582076/1‑91 (MQ=255) ccAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGc < 1:5216068/91‑1 (MQ=255) cAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCg > 2:2380429/1‑91 (MQ=255) cAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCg > 2:3098458/1‑91 (MQ=255) ttAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGc < 1:1580891/91‑1 (MQ=255) aaTTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGcac > 1:4008895/1‑91 (MQ=255) aTTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGcaca > 2:3068153/1‑91 (MQ=255) aTTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGcaca < 1:278052/91‑1 (MQ=255) tttGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAg < 2:4832086/91‑1 (MQ=255) tGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTg > 2:3993719/1‑91 (MQ=255) ggACAATGAAACGATTCATAAACAAGCCGTTTATCTCTTCGAAGCAACGGCTTTTCTATGAGCTATAAAATCAGTATGGCGAAGCACAGTg < 2:323788/90‑1 (MQ=255) gACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGa < 2:727833/91‑1 (MQ=255) gACAATCTAAAGATTTATAAAAAAGCCGGTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGa < 2:2699050/91‑1 (MQ=255) cAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATc > 2:650857/1‑91 (MQ=255) cAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATc > 1:4159798/1‑91 (MQ=255) cAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATc > 1:3070409/1‑91 (MQ=255) aTCTAAAGATTTCTAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCAt < 2:3631465/91‑1 (MQ=255) tCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCAtt < 2:1906012/91‑1 (MQ=255) tCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCAtt < 2:4230764/91‑1 (MQ=255) cTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTg > 1:4552207/1‑91 (MQ=255) tAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGa > 1:1994702/1‑91 (MQ=255) tAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGa < 2:3711375/91‑1 (MQ=255) aGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAAtt < 2:2174054/91‑1 (MQ=255) aGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTCCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAAtt < 1:3698040/91‑1 (MQ=255) aTTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCt > 2:1156101/1‑91 (MQ=255) aTTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCt > 2:3384313/1‑91 (MQ=255) ttATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGa > 1:4085425/1‑91 (MQ=255) ataAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACt > 1:3246196/1‑91 (MQ=255) taAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACtt < 2:4398190/91‑1 (MQ=255) taAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACtt < 2:132476/91‑1 (MQ=255) aaaaaaGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACttt > 1:1282992/1‑91 (MQ=255) aaaaaGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTta < 2:5187974/91‑1 (MQ=255) aaaaaGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTAGAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTta < 1:4244407/91‑1 (MQ=255) aaaaaGCCGTTGGTCGCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGGCTTta < 2:5531967/91‑1 (MQ=255) AAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTtat < 2:5418288‑M1/91‑1 (MQ=255) | AGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTAT > USA300TCH1516_ALE/2862952‑2863131 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |