| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2863074 | 269 (0.940) | 10 (0.040) | 7/150 | NT | 3.8% | intergenic (+44/+16) | USA300TCH1516_02707/USA300HOU_RS14670 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2864026 | NA (NA) | intergenic (‑439/‑19) | USA300HOU_RS14670/USA300HOU_RS14675 | hypothetical protein/hypothetical protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2862980‑2863074‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttttTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA < USA300TCH1516_ALE/2864026‑2863937 ATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGC > 1:2925302/1‑91ATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGC > 1:2708044/1‑91ATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGC < 2:3478372/91‑1ATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGC > 2:589657/1‑91ATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGC > 2:5319741/1‑91ATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGC > 2:2013812/1‑91 TGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCT < 1:745156/91‑1 TGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCT < 1:5085416/91‑1 GAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTTACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTT < 2:2448921/91‑1 GAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATTAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTT < 1:5632159/91‑1 GAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTT < 2:1479880/91‑1 GAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTT < 1:841765/91‑1 GAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTT < 1:2213765/91‑1 GAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTT < 2:3076525/91‑1 GAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTT < 2:2517717/91‑1 GAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTT < 1:4202580/91‑1 GAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTT < 2:2657052/91‑1 GAGTTTCATCGAAGATGATAAACTTGTCCAGCTGAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTT < 2:298982/91‑1 GAGTTGCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAAGCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTT < 2:2656789/91‑1 AGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTT > 1:4881773/1‑91 GTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTT > 2:2551201/1‑91 AGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGC < 2:2894942/77‑1 AGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGC > 1:2894942/1‑77 AAGCCGTTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTC > 1:742003/1‑91 CGTTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAA > 2:5337712/1‑91 CGTTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAA > 1:663417/1‑91 CGTTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAA > 1:663351/1‑91 CGTTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAA > 1:663258/1‑91 TTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAAT > 1:396395/1‑91 TGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATA > 1:4858809/1‑91 GGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATAC > 2:52213/1‑91 CTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTC > 1:5066538/1‑91 TCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCC > 1:879964/1‑91 ACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCT > 2:4451637/1‑91 ACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCT > 2:1172189/1‑91 ACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCT < 1:2174249/91‑1 ACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCT > 1:1976862/1‑91 ACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCT < 1:2174054/91‑1 ACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCT > 1:1976861/1‑91 ACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCT < 2:2375434/91‑1 ACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCT > 1:166660/1‑91 ACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCT < 1:3296706/91‑1 ACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCT < 2:870771/91‑1 ACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCT < 1:3045729/91‑1 ACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGCACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGATGTTCT > 1:4702498/1‑91 CGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTA > 2:1916907/1‑91 CGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTA < 2:4880174/91‑1 CGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTA < 2:2098364/91‑1 CGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTA < 1:1917620/91‑1 CGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTA < 2:4085483/91‑1 CGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTA > 2:4440863/1‑91 GGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTAT > 2:358725/1‑91 GGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTAT > 1:1452096/1‑91 GCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATA > 1:1241969/1‑91 GCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATA > 1:3971642/1‑91 GCTTTTTTATAAATCTTTAGATTGTCAAAATAAGCTGGACAAGTTTATCATCTTCGATGACACCCATAAATACTTCCAATGGTGTTCTATA > 2:2935670/1‑91 CTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAA > 1:2502151/1‑91 CTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAA < 1:3845518/91‑1 CTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAA > 2:40007/1‑91 CTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGATTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAA < 1:5487587/91‑1 TTTTTTATTTATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAAC > 2:4864181/1‑91 TTTTTTATAAATCTTTAGATTGTCAAATTACGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAAC > 2:3580154/1‑91 TTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAAC < 1:2262119/91‑1 TTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAAC < 1:4410853/91‑1 TTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAAC > 2:2433355/1‑91 TTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAAC < 1:3851056/91‑1 TTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAAC > 1:1525381/1‑91 TTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAAC > 1:3261677/1‑91 TTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACC > 1:5462735/1‑91 TTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACC > 1:1756125/1‑91 TTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACC > 1:2085856/1‑91 TTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAAC < 2:3445938/90‑1 TTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAAC > 1:3445938/1‑90 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT < 1:3210228/91‑1 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT > 1:1317501/1‑91 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT < 2:5340957/91‑1 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT < 1:2115904/91‑1 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT > 1:2410384/1‑91 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT > 1:2638261/1‑91 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT < 1:2960742/91‑1 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT > 2:2074521/1‑91 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT > 1:325946/1‑91 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT < 1:4894016/91‑1 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT < 1:5105475/91‑1 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT > 1:5246415/1‑91 TTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA < 2:4418243/91‑1 TTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA < 2:4205408/91‑1 TTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA > 1:2387036/1‑91 TTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA < 1:3301419/91‑1 TTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA < 1:526669/91‑1 TTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCACCTTCGATGAGACTCATAAATACTTCCAATGGTGTTCTATAACCTA < 2:5455085/91‑1 ATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2862980‑2863074‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttttTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA < USA300TCH1516_ALE/2864026‑2863937 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |