BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2863074	269 (0.940)	10 (0.040)	7/150	NT	3.8%	intergenic (+44/+16)	USA300TCH1516_02707/USA300HOU_RS14670	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 2864026	NA (NA)	10 (0.040)	7/150	NT	3.8%	intergenic (‑439/‑19)	USA300HOU_RS14670/USA300HOU_RS14675	hypothetical protein/hypothetical protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 403 total aligned reads displayed.

TATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACGTC  >  USA300TCH1516_ALE/2863942‑2864116

 ataGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGga                                                                                     >  2:1310568/1‑91 (MQ=32)

 ataGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGga                                                                                     <  1:2672993/91‑1 (MQ=32)

  taGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGgag                                                                                    <  1:409645/91‑1 (MQ=33)

  taGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGgag                                                                                    >  1:2093682/1‑91 (MQ=33)

  taGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGgag                                                                                    <  2:4406695/91‑1 (MQ=33)

   aGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGgaga                                                                                   <  2:195061/91‑1 (MQ=34)

   aGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGgaga                                                                                   <  2:3985367/91‑1 (MQ=34)

   aGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGgaga                                                                                   >  1:321855/1‑91 (MQ=34)

   aGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGgaga                                                                                   <  1:2069607/91‑1 (MQ=34)

     aaCACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTGTAAAAAAGgagaga                                                                                 >  1:4682979/1‑91 (MQ=37)

       cacCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGAtt                                                                               >  2:5590384/1‑91 (MQ=39)

       cacCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGAtt                                                                               >  1:4209359/1‑91 (MQ=39)

       cacCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGAtt                                                                               >  2:2369126/1‑91 (MQ=39)

        acCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTg                                                                              <  2:3742613/91‑1 (MQ=40)

         ccATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGa                                                                             <  2:5160006/91‑1 (MQ=255)

          cATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGaa                                                                            >  2:2242651/1‑91 (MQ=255)

           aTTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAAt                                                                           >  2:4027748/1‑91 (MQ=255)

            ttGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATc                                                                          <  2:3251037/91‑1 (MQ=255)

             tGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACATTCTAAAGATTTATAAAAAAGGAGAGATTGAATCa                                                                         <  2:3341201/91‑1 (MQ=255)

             tGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCa                                                                         >  1:3972876/1‑91 (MQ=255)

              gggaGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATATAAAAGGAGTGATTGaataat                                                                        >  2:5648102/4‑91 (MQ=14)

              ggAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCAt                                                                        >  2:4645331/1‑91 (MQ=255)

              ggAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCAt                                                                        >  1:3516769/1‑91 (MQ=255)

              ggAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCAt                                                                        >  2:662856/1‑91 (MQ=255)

               gAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATg                                                                       <  2:2590396/91‑1 (MQ=255)

               gAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATg                                                                       <  1:4756313/91‑1 (MQ=255)

               gAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATg                                                                       <  2:1187685/91‑1 (MQ=255)

                aaGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGa                                                                      <  2:2778745/91‑1 (MQ=255)

                aaGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTAAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGa                                                                      >  1:4403992/1‑91 (MQ=255)

                   tATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAAt                                                                   >  2:2469954/1‑91 (MQ=255)

                   tATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAAt                                                                   <  2:4218468/91‑1 (MQ=255)

                    aTTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAAtt                                                                  <  1:5461860/91‑1 (MQ=255)

                     tttATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAAttt                                                                 <  1:3800915/91‑1 (MQ=255)

                     tttATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAAttt                                                                 >  1:4276328/1‑91 (MQ=255)

                     tttATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAAttt                                                                 <  1:2246357/91‑1 (MQ=255)

                      ttATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTa                                                                <  2:2917485/91‑1 (MQ=255)

                       tATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTag                                                               >  2:4075032/1‑91 (MQ=255)

                       tATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAAATTAATAAAAAAGGAGAGATTGAATCATGAAATTTag                                                               <  2:3092750/91‑1 (MQ=255)

                       tATGAGTATCATCGAAGATGATAAACTTGTCAAGCTTAATTTTACAATCTAAAGATTTATGAAAAAGGAGAGATTGAATCATGAAATCTag                                                               <  1:4491756/91‑1 (MQ=18)

                        aTGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTaga                                                              >  1:1148620/1‑91 (MQ=255)

                        aTGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTaga                                                              >  2:5005566/1‑91 (MQ=255)

                        aTGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATAAATAAAAAAGGAGAGATTGAATCATGAAATTTaga                                                              <  2:152707/91‑1 (MQ=255)

                          gAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAgaga                                                            <  1:3086632/91‑1 (MQ=255)

                               tCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAg                                                       >  2:2140903/1‑91 (MQ=255)

                                cATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGt                                                      >  1:5291970/1‑91 (MQ=255)

                                cATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGt                                                      <  2:3998025/91‑1 (MQ=255)

                                cATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGt                                                      >  1:2329858/1‑91 (MQ=255)

                                cATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAAATATATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGt                                                      <  2:1739802/91‑1 (MQ=255)

                                  tCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTaa                                                    <  2:4137913/91‑1 (MQ=255)

                                  tCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTaa                                                    >  2:4801600/1‑91 (MQ=255)

                                  tCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTaa                                                    <  2:899847/91‑1 (MQ=255)

                                   cGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTaaa                                                   <  2:179700/91‑1 (MQ=255)

                                      aGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGGATTAGTAAAACa                                                <  2:5311020/91‑1 (MQ=255)

                                      aGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACa                                                >  1:1056798/1‑91 (MQ=255)

                                      aGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACa                                                >  2:1645832/1‑91 (MQ=255)

                                      aGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACa                                                <  1:3345536/91‑1 (MQ=255)

                                      aGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACa                                                >  2:2403871/1‑91 (MQ=255)

                                       gatgatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATACAAAAGGAGATATTGAATCATGAAATTTAGAGAATTAGTAAAACaa                                               <  2:5452424/91‑1 (MQ=255)

                                         tgatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATc                                             <  1:2030122/91‑1 (MQ=255)

                                          gatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCa                                            >  1:2947471/1‑91 (MQ=255)

                                          gatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCa                                            >  2:2103310/1‑91 (MQ=255)

                                          gatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCa                                            >  1:1707295/1‑91 (MQ=255)

                                          gatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCa                                            >  1:4940337/1‑91 (MQ=255)

                                           atAAACTTGTCCAGCTTAATTTGACAATCTCAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTCAAACAATcgt                                           >  2:4489579/1‑89 (MQ=255)

                                           atAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCat                                           >  1:4346006/1‑91 (MQ=255)

                                            tAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCata                                          <  2:1234374/91‑1 (MQ=255)

                                             aaaCTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCatat                                         >  1:1925556/1‑91 (MQ=255)

                                               aCTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGa                                       <  2:1880577/91‑1 (MQ=255)

                                                 ttGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAgg                                     <  2:819509/91‑1 (MQ=255)

                                                   gTCCACCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAGCAATCATATGAGGAt                                   >  2:5535503/1‑91 (MQ=255)

                                                    tCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGAtt                                  <  2:747070/91‑1 (MQ=255)

                                                    tCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATAATATGAGGAtt                                  >  2:5260605/1‑91 (MQ=255)

                                                     ccAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGAttt                                 <  2:1422251/91‑1 (MQ=255)

                                                     ccAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGAttt                                 <  1:921697/91‑1 (MQ=255)

                                                     ccAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGAttt                                 >  1:2778797/1‑91 (MQ=255)

                                                      cAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTCAAACAATCATATGAGGATTTg                                >  2:4327868/1‑91 (MQ=255)

                                                      cAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTg                                >  1:1250640/1‑91 (MQ=255)

                                                      cAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTg                                >  2:5232365/1‑91 (MQ=255)

                                                       aGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGa                               <  1:2564744/91‑1 (MQ=255)

                                                       aGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGa                               <  1:1193625/91‑1 (MQ=255)

                                                       aGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGa                               <  1:3621499/91‑1 (MQ=255)

                                                       aGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGa                               <  1:5383147/91‑1 (MQ=255)

                                                        tcTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTgta                              <  2:4898558/90‑3 (MQ=255)

                                                        gCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGaa                              >  2:1104483/1‑91 (MQ=255)

                                                         cTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGaaa                             <  2:5487587/91‑1 (MQ=255)

                                                             aTTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAAtt                         <  1:2751187/91‑1 (MQ=255)

                                                             aTTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAAtt                         >  2:4526617/1‑91 (MQ=255)

                                                             aTTTGACAATCCAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAAtt                         <  1:1773493/91‑1 (MQ=255)

                                                               ttGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTg                       <  1:2453570/91‑1 (MQ=255)

                                                                tGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGa                      >  1:1414935/1‑91 (MQ=255)

                                                                 gACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGAc                     <  1:4176980/91‑1 (MQ=255)

                                                                  aCAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCAGATGAGGATTTGAAAAATTTGACt                    <  1:5570054/91‑1 (MQ=255)

                                                                      tCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAAGTTGACTGTaa                >  1:2134793/1‑91 (MQ=255)

                                                                        tAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACt              >  1:74349/1‑91 (MQ=255)

                                                                         aaaGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACtt             >  2:3881607/1‑91 (MQ=255)

                                                                         aaaGAATAATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACtt             <  2:3528923/91‑1 (MQ=255)

                                                                               ttATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGtata       <  2:3657245/91‑1 (MQ=37)

                                                                               ttATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGtata       <  2:5103906/91‑1 (MQ=37)

                                                                                  taAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACg    <  2:2861578/91‑1 (MQ=33)

                                                                                  taAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACg    <  2:105937/91‑1 (MQ=33)

TATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACGTC  >  USA300TCH1516_ALE/2863942‑2864116

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.