New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 1841996219 (0.760)12 (0.050) 9/134 NT 5.6% intergenic (+36/+58) htrA/tyrS Serine protease Do‑like HtrA/Tyrosine‑‑tRNA ligase
?USA300TCH1516_ALE = 1842015 225 (0.940)intergenic (+55/+39) htrA/tyrS Serine protease Do‑like HtrA/Tyrosine‑‑tRNA ligase

Only 100 of 373 total aligned reads displayed.

AAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTT  >  USA300TCH1516_ALE/1841906‑1842086
                                                                                          |                                                                                          
aaGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT                                                                                            <  2:4390339‑M1/91‑1 (MQ=255)
aaGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT                                                                                            <  1:1477690‑M1/91‑1 (MQ=255)
aaGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT                                                                                            <  1:3887743‑M1/91‑1 (MQ=255)
 aGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAtt                                                                                           <  1:4242037/91‑1 (MQ=255)
 aGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAtt                                                                                           >  1:2052440/1‑91 (MQ=255)
 aGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAtt                                                                                           <  1:2198767/91‑1 (MQ=255)
  gCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTa                                                                                          <  2:4648131/91‑1 (MQ=255)
  gCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTa                                                                                          <  1:4571574/91‑1 (MQ=255)
  gCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTa                                                                                          <  1:3535328/91‑1 (MQ=255)
    cGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACa                                                                                        <  1:4460080/91‑1 (MQ=255)
      aTCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACAtt                                                                                      >  1:5334732/1‑91 (MQ=255)
       tCAGAACGTCTATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACGGAAAAGTACATTAAGAGCCTACTCATTACATTc                                                                                     <  1:5625678/91‑1 (MQ=255)
       tCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTc                                                                                     >  2:1912143/1‑91 (MQ=255)
        cAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCt                                                                                    >  2:1484971/1‑91 (MQ=255)
          gAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcct                                                                                  <  2:3838575‑M1/91‑11 (MQ=255)
          gAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTa                                                                                  >  2:1635518/1‑91 (MQ=255)
           aaCGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAg                                                                                 >  2:218000/1‑91 (MQ=255)
           aaCGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAg                                                                                 <  2:1112964/91‑1 (MQ=255)
            aCGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaa                                                                                <  1:132734‑M1/91‑13 (MQ=255)
             cGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGga                                                                               <  1:526255/91‑1 (MQ=255)
              gTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGgaa                                                                              <  2:2675539/91‑1 (MQ=255)
              gTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGgaa                                                                              >  2:1439171/1‑91 (MQ=255)
              gTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGgaa                                                                              <  1:4800590/91‑1 (MQ=255)
                   tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGGGCCTACTCATattcattcctaagaatgta                                                                         <  2:2886232‑M1/91‑20 (MQ=255)
                   tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgta                                                                         <  2:5093045‑M1/91‑20 (MQ=255)
                   tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGgaatgaat                                                                         <  1:5396422/91‑1 (MQ=255)
                   tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGgaatgaat                                                                         >  2:68599/1‑91 (MQ=255)
                    cACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATa                                                                        <  2:641358‑M2/91‑2 (MQ=255)
                     aCCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATat                                                                       >  2:1996681‑M2/1‑89 (MQ=255)
                     aCCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATat                                                                       >  1:2729751‑M2/1‑89 (MQ=255)
                     aCCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATat                                                                       <  2:4000345‑M2/91‑3 (MQ=255)
                         ggCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATatgagt                                                                   >  1:978216‑M2/1‑85 (MQ=255)
                         ggCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATatgagt                                                                   >  2:5256951‑M2/1‑85 (MQ=255)
                          gCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATatgagta                                                                  <  1:3539748‑M2/91‑8 (MQ=255)
                            cAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATatgagtagg                                                                <  1:1913081‑M2/91‑10 (MQ=255)
                              aGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATatgagtaggct                                                              <  1:1739306‑M2/91‑12 (MQ=255)
                               ggCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATatgagtaggctc                                                             >  2:2369543‑M2/1‑79 (MQ=255)
                               ggCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATatgagtaggctc                                                             >  1:3157439‑M2/1‑79 (MQ=255)
                                gCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATctgagtaggctct                                                            <  2:3649837‑M2/91‑14 (MQ=255)
                                gCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATatgagtaggctct                                                            <  1:4303307‑M2/91‑14 (MQ=255)
                                gCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATatgagtaggctct                                                            <  1:1618268‑M2/91‑14 (MQ=255)
                                   aTAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAat                                                         <  1:2149170/91‑1 (MQ=255)
                                     agagATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAattt                                                       >  2:1555336/1‑91 (MQ=255)
                                      gagaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAattta                                                      <  1:3417017/91‑1 (MQ=255)
                                         aTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAatttattt                                                   >  2:3516236/1‑91 (MQ=255)
                                           ttCTTTAGATAATTTACAGACAGAACAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTACGCTCTAATTTATTTAg                                                 >  2:5374417/1‑91 (MQ=255)
                                            tCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGc                                                >  2:524162/1‑91 (MQ=255)
                                            tCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGc                                                <  1:264567/91‑1 (MQ=255)
                                            tCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGc                                                <  1:3054068/91‑1 (MQ=255)
                                            tCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGc                                                <  2:5652082/91‑1 (MQ=255)
                                               ttAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTAt                                             >  2:2535682/1‑91 (MQ=255)
                                               ttAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTAt                                             >  2:1749895/1‑91 (MQ=255)
                                                tAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATg                                            <  2:1235300/91‑1 (MQ=255)
                                                     aaTTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAtt                                       >  1:2437467/1‑91 (MQ=255)
                                                       tttACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATtat                                     >  2:1378861/1‑91 (MQ=255)
                                                        ttACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATtata                                    <  1:1156567/91‑1 (MQ=255)
                                                        ttACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATtata                                    <  2:3352023/91‑1 (MQ=255)
                                                        ttACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATtata                                    >  2:615205/1‑91 (MQ=255)
                                                          acagacagAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtatt                                  >  2:1026443/1‑91 (MQ=255)
                                                          acagacagAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtatt                                  <  2:3600150/91‑1 (MQ=255)
                                                            agacagaAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtattta                                <  1:1021833/91‑1 (MQ=255)
                                                              acagaAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtatttatt                              <  1:4774213/91‑1 (MQ=255)
                                                                agaAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGa                            <  1:2206465/91‑1 (MQ=255)
                                                                  aaaaGTGCATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATa                          <  2:5162889/91‑1 (MQ=255)
                                                                  aaaaGTACATTAAGAGCCTACTCATattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaaga                          <  2:4906009‑M1/91‑67 (MQ=255)
                                                                   aaaGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAg                         <  1:3816494/91‑1 (MQ=255)
                                                                   aaaGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAg                         <  1:750025/91‑1 (MQ=255)
                                                                     aGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGtt                       <  2:444815/91‑1 (MQ=255)
                                                                     aGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGtt                       >  2:5540991/1‑91 (MQ=255)
                                                                     aGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGtt                       >  2:2761752/1‑91 (MQ=255)
                                                                     aGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGtt                       <  2:4195805/91‑1 (MQ=255)
                                                                      gTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTa                      >  1:2895583/1‑91 (MQ=255)
                                                                       tACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTaa                     >  1:4602201/1‑91 (MQ=255)
                                                                       tACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTaa                     >  2:4764050/1‑91 (MQ=255)
                                                                         cATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAAcc                   >  1:655175/1‑91 (MQ=255)
                                                                           ttAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCAt                 >  1:3771307/1‑91 (MQ=255)
                                                                            tAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATg                <  1:1090705/91‑1 (MQ=255)
                                                                              agagCCTACTCATattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgc              <  2:3896207‑M1/91‑79 (MQ=255)
                                                                              agagCCTACTCATattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgc              <  2:2281408‑M1/91‑79 (MQ=255)
                                                                              agagCCTACTCATTACCTTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGaa              <  1:253193/91‑1 (MQ=255)
                                                                               gagCCTACTCATattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgcc             <  1:4886412‑M1/91‑80 (MQ=255)
                                                                               gagCCTACTCATattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgcc             >  2:1285007‑M1/1‑12 (MQ=255)
                                                                               gagCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAg             <  2:3061604/91‑1 (MQ=255)
                                                                                  ccTACTCATattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttg          >  1:919531‑M1/1‑9 (MQ=255)
                                                                                  ccTACTCATattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttg          <  1:1798363‑M1/91‑83 (MQ=255)
                                                                                  ccTACTCATattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttg          >  1:72812‑M1/1‑9 (MQ=255)
                                                                                   cTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAtt         >  2:1889933/1‑91 (MQ=255)
                                                                                   cTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAtt         >  1:5027969/1‑91 (MQ=255)
                                                                                   cTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAtt         <  2:3244265/91‑1 (MQ=255)
                                                                                    tACTCATattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggc        >  1:4485237‑M1/1‑7 (MQ=255)
                                                                                     aCTCATattcattcctaagaatgtaatgagtaggctcttaatgtatttttctgtctgtaaattatctaaagaaatatctatcgccttggcc       >  2:5547111‑M1/1‑6 (MQ=255)
                                                                                     aCTCATattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggcc       >  2:1537032‑M1/1‑6 (MQ=255)
                                                                                     aCTCATattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggcc       >  2:408340‑M1/1‑6 (MQ=255)
                                                                                     aCTCATTACATTCTTAGGAATGAATatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggcc       <  2:4609473‑M2/91‑67 (MQ=255)
                                                                                     aCTCATTACATTCTTAGGAATGAATatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctcgatcgccttggcc       <  2:3629370‑M2/91‑67 (MQ=255)
                                                                                     aCTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTCtttt       >  2:3213532/1‑91 (MQ=255)
                                                                                      cTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAttttt      <  2:853332/91‑1 (MQ=255)
                                                                                        cATattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggccagg    <  1:4923742‑M1/91‑89 (MQ=255)
                                                                                        cATattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggccagg    <  1:4923362‑M1/91‑89 (MQ=255)
                                                                                          ttACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCtt  >  1:3634887/1‑91 (MQ=255)
                                                                                          |                                                                                          
AAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTT  >  USA300TCH1516_ALE/1841906‑1842086

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.