BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1841996	219 (0.760)	12 (0.050)	9/134	NT	5.6%	intergenic (+36/+58)	htrA/tyrS	Serine protease Do‑like HtrA/Tyrosine‑‑tRNA ligase
*	?	USA300TCH1516_ALE	= 1842015	225 (0.940)	12 (0.050)	9/134	NT	5.6%	intergenic (+55/+39)	htrA/tyrS	Serine protease Do‑like HtrA/Tyrosine‑‑tRNA ligase

Only 100 of 313 total aligned reads displayed.

TCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGTA  >  USA300TCH1516_ALE/1841925‑1842105

tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGgaatgaat                                                                                            <  1:5396422/91‑1 (MQ=255)

 cACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATa                                                                                           <  2:641358‑M2/91‑2 (MQ=255)

   ccTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATatg                                                                                         <  1:4923362‑M2/91‑4 (MQ=255)

      ggCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATatgagt                                                                                      >  1:3422930‑M2/1‑85 (MQ=255)

      ggCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATatgagt                                                                                      >  2:408340‑M2/1‑85 (MQ=255)

       gCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATatgagta                                                                                     <  1:3539748‑M2/91‑8 (MQ=255)

         cAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATatgagtagg                                                                                   >  1:72812‑M2/1‑82 (MQ=255)

           aGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATatgagtaggct                                                                                 >  1:5033907‑M2/1‑80 (MQ=255)

           aGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATatgagtaggct                                                                                 >  1:218000‑M2/1‑80 (MQ=255)

            ggCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATatgagtaggctc                                                                                >  2:2369543‑M2/1‑79 (MQ=255)

            ggCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATatgagtaggctc                                                                                >  1:3157439‑M2/1‑79 (MQ=255)

             gCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATctgagtaggctct                                                                               <  2:3649837‑M2/91‑14 (MQ=255)

             gCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATatgagtaggctct                                                                               <  1:1618268‑M2/91‑14 (MQ=255)

               gATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTaa                                                                             <  1:1061354/91‑1 (MQ=255)

                aTAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAat                                                                            <  1:2149170/91‑1 (MQ=255)

                   gagaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAattta                                                                         <  2:580781/91‑1 (MQ=255)

                   gagaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAattta                                                                         >  2:193374/1‑91 (MQ=255)

                   gagaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAattta                                                                         >  2:2035804/1‑91 (MQ=255)

                   gagaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAattta                                                                         >  2:2542415/1‑91 (MQ=255)

                    agaTTTCTTTAGATAATTTACAGACAGAAATGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAatttat                                                                        <  2:5340166/91‑1 (MQ=255)

                      aTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAatttattt                                                                      >  2:3516236/1‑91 (MQ=255)

                      aTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAatttattt                                                                      >  1:2848812/1‑91 (MQ=255)

                         tCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGc                                                                   <  1:3054068/91‑1 (MQ=255)

                         tCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGc                                                                   <  2:2073533/91‑1 (MQ=255)

                         tCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGc                                                                   >  2:524162/1‑91 (MQ=255)

                          cTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCt                                                                  >  1:1525968/1‑91 (MQ=255)

                             tAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATg                                                               <  2:1235300/91‑1 (MQ=255)

                             tAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTACGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATg                                                               <  1:4326665/91‑1 (MQ=255)

                               gATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCa                                                             >  1:4474387/1‑91 (MQ=255)

                                aTAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCaa                                                            <  1:952525/91‑1 (MQ=255)

                                 tAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAt                                                           <  1:2415575/91‑1 (MQ=255)

                                   aTTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATta                                                         <  1:4942787/91‑1 (MQ=255)

                                    tttACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATtat                                                        >  2:1378861/1‑91 (MQ=255)

                                    tttACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATtat                                                        >  1:3856734/1‑91 (MQ=255)

                                     ttACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATtata                                                       <  2:3352023/91‑1 (MQ=255)

                                     ttACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATtata                                                       <  1:1156567/91‑1 (MQ=255)

                                      tACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTatat                                                      >  2:4408732/1‑91 (MQ=255)

                                      tACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTatat                                                      <  2:381469/91‑1 (MQ=255)

                                        cagacagaAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtattt                                                    <  2:5136434/91‑1 (MQ=255)

                                         agacagaAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtattta                                                   <  2:53818/91‑1 (MQ=255)

                                         agacagaAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtattta                                                   >  1:984748/1‑91 (MQ=255)

                                         agacagaAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtattta                                                   >  1:3635413/1‑91 (MQ=255)

                                         agacagaAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtattta                                                   >  1:2631611/1‑91 (MQ=255)

                                         agacagaAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtattta                                                   >  1:2007344/1‑91 (MQ=255)

                                          gccagaAAAGTACATTAAGAGCCTAGTCATTACAATCTTAGGAATGCATATGAGTAAGCTCTAATTTATTGAGCTATGCAATTAtattcat                                                  >  2:4725575/3‑91 (MQ=255)

                                           acagaAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtatttatt                                                 >  1:3796256/1‑91 (MQ=255)

                                           acagaAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtatttatt                                                 <  2:4878317/91‑1 (MQ=255)

                                             agaAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGa                                               <  1:2206465/91‑1 (MQ=255)

                                             agaAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGa                                               <  2:774094/91‑1 (MQ=255)

                                               aaaaGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATa                                             >  1:607022/1‑91 (MQ=255)

                                                aaaGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAg                                            >  1:4611495/1‑91 (MQ=255)

                                                  aGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGtt                                          <  2:4195805/91‑1 (MQ=255)

                                                  aGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGtt                                          <  1:4857161/91‑1 (MQ=255)

                                                   gTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTa                                         >  1:175469/1‑91 (MQ=255)

                                                    tACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTaa                                        >  2:678077/1‑91 (MQ=255)

                                                     aCATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAAc                                       >  2:328989/1‑91 (MQ=255)

                                                      cATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAAcc                                      >  1:655175/1‑91 (MQ=255)

                                                      cATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAAcc                                      >  2:1554117/1‑91 (MQ=255)

                                                      cATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAAcc                                      >  2:2497114/1‑91 (MQ=255)

                                                        ttAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCAt                                    >  1:3687239/1‑91 (MQ=255)

                                                         tAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATg                                   <  1:4775359/91‑1 (MQ=255)

                                                          aaGAGCCTACTCATTACATTCTTAGAAATGAATATGAGTAGGATCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGa                                  <  2:3900397/91‑1 (MQ=255)

                                                           agagCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGaa                                 <  1:2530492/91‑1 (MQ=255)

                                                           agagCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGaa                                 <  2:1483936/91‑1 (MQ=255)

                                                            gagCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAg                                <  2:3061604/91‑1 (MQ=255)

                                                            gagCCTACTCATTACATTCTTAGAAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAg                                <  2:1100127/91‑1 (MQ=255)

                                                             agCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGt                               >  1:4561299/1‑91 (MQ=255)

                                                               ccTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAt                             <  2:5084300/91‑1 (MQ=255)

                                                                cTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAtt                            >  2:1889933/1‑91 (MQ=255)

                                                                cTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAtt                            <  2:3244265/91‑1 (MQ=255)

                                                                 tACTCATTACATTCTTAGGAATGAATatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggc                           <  1:5269126‑M2/91‑66 (MQ=255)

                                                                  aCTCATTACATTCTTAGGAATGAATatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggcc                          <  2:4609473‑M2/91‑67 (MQ=255)

                                                                  aCTCATTACATTCTTAGGAATGAATatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctcgatcgccttggcc                          <  2:3629370‑M2/91‑67 (MQ=255)

                                                                  aCTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTCtttt                          >  2:3213532/1‑91 (MQ=255)

                                                                  aCTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAtttt                          <  1:4594074/91‑1 (MQ=255)

                                                                   cTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAttttt                         <  1:2771399/91‑1 (MQ=255)

                                                                   cTCATAACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTCAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAttttt                         >  2:5541729/1‑91 (MQ=255)

                                                                     cATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTc                       >  2:1267848/1‑91 (MQ=255)

                                                                     cATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTc                       >  2:2212860/1‑91 (MQ=255)

                                                                      aTTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCt                      <  1:137023/91‑1 (MQ=255)

                                                                      aTTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCt                      <  1:2090800/91‑1 (MQ=255)

                                                                        tACATTCTTAGGAATGAATatgagtaggcccttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggccaggtga                    <  2:2886232‑M2/91‑73 (MQ=255)

                                                                         aCATTCTTAGGAATGAATatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggccaggtgat                   <  1:3379393‑M2/91‑74 (MQ=255)

                                                                          cATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTAcc                  >  2:1570145/1‑91 (MQ=255)

                                                                          cATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTAcc                  <  1:1911817/91‑1 (MQ=255)

                                                                            ttCTTAGGAATAAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTCTATTTATTGATAGTTAACCATGAAGTATTATTTCTTACcgc                >  2:5624213/1‑91 (MQ=255)

                                                                             tCTTAGGAATGAATgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggccaggtgattgacgt               <  1:422015‑M2/91‑78 (MQ=255)

                                                                              cTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGcga              >  2:1813448/1‑91 (MQ=255)

                                                                               ttAGGAATGAATatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggccaggtgattgacgt             <  1:132704‑M2/91‑80 (MQ=255)

                                                                               ttAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGcgac             >  2:1622862/1‑91 (MQ=255)

                                                                                 aGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGcgacga           >  2:3842262/1‑91 (MQ=255)

                                                                                 aGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGcgacga           >  1:26870/1‑91 (MQ=255)

                                                                                 aGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGcgacga           >  1:2910727/1‑91 (MQ=255)

                                                                                   gaatgaatATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGaat         >  2:5550556/1‑91 (MQ=255)

                                                                                      tgaatATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGaataat      <  2:3539748/91‑1 (MQ=255)

                                                                                        aatATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCg    >  1:1019690/1‑91 (MQ=255)

                                                                                        aatATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCg    <  1:4426748/91‑1 (MQ=255)

                                                                                         atatGAGTAGGCTCTACTTTATTTAGCTATGCAATTATATTTATTGATTGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGt   >  1:1493101/1‑91 (MQ=255)

                                                                                         atatGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGt   <  2:2754965/91‑1 (MQ=255)

                                                                                          tatGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGTa  >  1:841620/1‑91 (MQ=255)

TCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGTA  >  USA300TCH1516_ALE/1841925‑1842105

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.