BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	= 64	674 (0.590)	16 (0.020) +TTGTTATATTAAGTTTATTATAGCACTTTAAAT	8/94	NT	7.5%	intergenic (–/‑168)	–/repA	–/replication protein A
*	?	CP000731	= 27041	0 (0.000)	16 (0.020) +TTGTTATATTAAGTTTATTATAGCACTTTAAAT	8/94	NT	7.5%	intergenic (‑194/–)	USA300HOU_pUSA300HOUMR0033/–	partitioning protein/–

Only 100 of 1207 total aligned reads displayed.

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTANAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAC  >  CP000731/1‑147

agctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTg                                                                                    <  2:1500342‑M1/65‑1 (MQ=255)

agctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTg                                                                                    <  1:3069378‑M1/65‑1 (MQ=255)

   tatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGta                                                                                 >  1:995029‑M1/24‑91 (MQ=255)

     tattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGtaat                                                                               >  1:5127594‑M1/22‑91 (MQ=255)

       ttttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGtaataa                                                                             <  2:4527344‑M1/72‑1 (MQ=255)

       ttttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGtaataa                                                                             <  2:5110593‑M1/72‑1 (MQ=255)

       ttttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGtaataa                                                                             <  1:540682‑M1/72‑1 (MQ=255)

       ttttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGtaataa                                                                             >  1:869408‑M1/20‑91 (MQ=255)

        tttcccttttataagtttATTTAAAGGGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATaaa                                                                            >  2:4307414‑M1/19‑91 (MQ=255)

          tcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAAc                                                                          >  1:670684‑M1/17‑91 (MQ=255)

          tcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAAc                                                                          >  2:210309‑M1/17‑91 (MQ=255)

            ccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGt                                                                        >  2:4929511‑M1/15‑91 (MQ=255)

            ccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGt                                                                        <  2:3262897‑M1/77‑1 (MQ=255)

             cttttataagtttATTTAAAGTGCTATAATAAACTTTATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGtt                                                                       <  2:4067345‑M1/78‑1 (MQ=255)

              ttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAACAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGttt                                                                      <  2:5437827‑M1/79‑1 (MQ=255)

              ttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAAcgtat                                                                      <  2:5596330‑M1/79‑3 (MQ=255)

              ttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGttt                                                                      >  1:489051‑M1/13‑91 (MQ=255)

               tttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTa                                                                     >  1:2413674‑M1/12‑91 (MQ=255)

                ttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTtag                                                                    >  1:3321612‑M1/11‑90 (MQ=255)

                ttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTtag                                                                    <  1:3751976‑M1/81‑2 (MQ=255)

                 tataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGa                                                                   >  2:2833877‑M1/10‑91 (MQ=255)

                 tataagtttATTTAAAGTGCTATAAAAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGCTAATAAAATGTTTAGa                                                                   <  2:5375886‑M1/82‑1 (MQ=255)

                  ataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGaa                                                                  >  2:3722262‑M1/9‑91 (MQ=255)

                   taagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACGACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGaaa                                                                 >  2:75423‑M1/8‑91 (MQ=255)

                    aagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAAc                                                                >  1:2380692‑M1/7‑91 (MQ=255)

                      gtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTg                                                              <  2:3377449‑M1/87‑1 (MQ=255)

                       tttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGt                                                             <  1:4745016‑M1/88‑1 (MQ=255)

                       tttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGt                                                             <  1:1890587‑M1/88‑1 (MQ=255)

                         tATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGttt                                                           <  2:5006275‑M1/90‑1 (MQ=255)

                           tttAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttat                                                         >  1:2148579/1‑91 (MQ=255)

                           tttAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttat                                                         >  2:2643190/1‑91 (MQ=255)

                           tttAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttat                                                         >  2:2496645/1‑91 (MQ=255)

                              aaaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGAAGATAAGTAATACAGCGTTCAGAAACTGtttaatca                                                      <  2:4640971/91‑5 (MQ=255)

                               aaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTttatttat                                                     <  2:3476564/91‑1 (MQ=255)

                               aaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTttatttat                                                     <  1:1164755/91‑1 (MQ=255)

                               aaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTttatttat                                                     <  1:276186/91‑1 (MQ=255)

                               aaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTttatttat                                                     <  1:1710409/91‑1 (MQ=255)

                               aaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTttatttat                                                     <  1:1004512/91‑1 (MQ=255)

                                aGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTtata                                                    <  1:4962564/91‑1 (MQ=255)

                                   gCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATaa                                                 >  2:1084836/1‑91 (MQ=255)

                                      ataataAACTTACTATAACAAAAAACCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAttt                                              >  2:3079692/1‑91 (MQ=255)

                                      ataataAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAttt                                              >  1:1244874/1‑91 (MQ=255)

                                      ataataAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAttt                                              <  1:265568/91‑1 (MQ=255)

                                       taataaACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAtttt                                             >  1:5040613/1‑91 (MQ=255)

                                        aataaACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTc                                            >  2:1361875/1‑91 (MQ=255)

                                        aataaACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTc                                            <  2:2900951/91‑1 (MQ=255)

                                        aataaACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTc                                            >  1:4366531/1‑91 (MQ=255)

                                        aataaACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTc                                            <  1:3458710/91‑1 (MQ=255)

                                        aataaACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTc                                            <  1:1085383/91‑1 (MQ=255)

                                         ataaACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCg                                           <  2:39768/91‑1 (MQ=255)

                                           aaaCTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGAt                                         >  1:1528367/1‑91 (MQ=255)

                                             aCTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATAc                                       >  2:6048/1‑91 (MQ=255)

                                             aCTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATAc                                       >  2:851152/1‑91 (MQ=255)

                                               ttAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGATTAGAAACTGTTTATTTATATAATTTTCGATACtt                                     >  2:2403128/1‑91 (MQ=255)

                                                 aaTATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGt                                   >  1:3955156/1‑91 (MQ=255)

                                                 aaTATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGt                                   >  1:45110/1‑91 (MQ=255)

                                                   tataACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGtat                                 <  2:1838722/91‑1 (MQ=255)

                                                   tataACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGtat                                 >  2:2191585/1‑91 (MQ=255)

                                                    ataACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGtatt                                <  1:4657654/91‑1 (MQ=255)

                                                     taACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGtatta                               <  2:663734/91‑1 (MQ=255)

                                                     taACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGtatta                               <  1:1802455/91‑1 (MQ=255)

                                                      aaCAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGtattat                              >  2:2007974/1‑91 (MQ=255)

                                                      aaCAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGtattat                              >  1:2270069/1‑91 (MQ=255)

                                                      aaCAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGtattat                              >  2:5528635/1‑91 (MQ=255)

                                                       aCAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATtata                             >  1:1334843/1‑91 (MQ=255)

                                                       aCAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATtata                             <  2:1721417/91‑1 (MQ=255)

                                                       aCAAAAACCCCAACTACTGGTAATAGTCGGGGTCTGGTAATCAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATtata                             >  1:5600995/1‑91 (MQ=255)

                                                          aaaaCCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATaa                          <  1:5311463/91‑1 (MQ=255)

                                                             ACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGa                       <  1:4027604‑M1/91‑1 (MQ=255)

                                                             ACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGa                       >  1:2546776‑M1/1‑91 (MQ=255)

                                                              CCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaa                      >  1:3194385‑M1/1‑91 (MQ=255)

                                                              CCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaa                      <  1:5231602‑M1/91‑1 (MQ=255)

                                                              CCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaa                      >  1:161872‑M1/1‑91 (MQ=255)

                                                               CCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaat                     <  1:2001816‑M1/91‑1 (MQ=255)

                                                               CCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaat                     >  1:585681‑M1/1‑91 (MQ=255)

                                                               CCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaat                     >  2:2244208‑M1/1‑91 (MQ=255)

                                                               CCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaat                     <  2:1292774‑M1/91‑1 (MQ=255)

                                                                ccAACTACTGGTAATAGTCGGGGTTTttgttatattaagtttattatagcactttaaataaacttataaaagggaaaatatagctttatca                    >  2:2763946‑M1/1‑26 (MQ=255)

                                                                 CAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaataa                   <  1:3865035‑M1/91‑1 (MQ=255)

                                                                  aaCTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaataat                  >  2:3531304/1‑91 (MQ=255)

                                                                  aaCTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaataat                  <  2:1170737/91‑1 (MQ=255)

                                                                      actGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTTTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCt              <  1:2899708/91‑1 (MQ=255)

                                                                       ctGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCtt             >  2:3838963/1‑91 (MQ=255)

                                                                       ctGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCtt             >  1:4183834/1‑91 (MQ=255)

                                                                       ctGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCtt             <  1:3567344/91‑1 (MQ=255)

                                                                       ctGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCtt             >  2:4767185/1‑91 (MQ=255)

                                                                         ggTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAg           >  2:3651977/1‑91 (MQ=255)

                                                                         ggTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAg           <  2:3146126/91‑1 (MQ=255)

                                                                         ggTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAg           <  2:1626382/91‑1 (MQ=255)

                                                                         ggTAATAGTCGGGGTTTGGTAATAAAACGTTGAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAg           >  1:5516243/1‑91 (MQ=255)

                                                                          gTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGt          >  2:4829435/1‑91 (MQ=255)

                                                                           tAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTg         >  2:442620/1‑91 (MQ=255)

                                                                               aGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAg     <  1:808621/91‑1 (MQ=255)

                                                                                gTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGc    >  1:3659766/1‑91 (MQ=255)

                                                                                gTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAAGAATATCTTAGTGCAAGc    <  1:4279719/91‑1 (MQ=255)

                                                                                 tCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCa   >  2:2998094/1‑91 (MQ=255)

                                                                                 tCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCa   <  2:1931446/91‑1 (MQ=255)

                                                                                  cGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAc  >  2:4198675/1‑91 (MQ=255)

                                                                                  cGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAc  <  2:524309/91‑1 (MQ=255)

                                                                                  cGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAc  >  2:2559859/1‑91 (MQ=255)

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTANAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAC  >  CP000731/1‑147

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.