BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	42564 =	341 (1.190)	16 (0.070) +TACATTATAAAATACATATC	8/120	NT	6.7%	coding (1402/1524 nt)	USA300TCH1516_00035	hypothetical protein
*	?	USA300TCH1516_ALE	= 2479065	251 (0.870)	16 (0.070) +TACATTATAAAATACATATC	8/120	NT	6.7%	intergenic (+21/+119)	USA300HOU_RS12765/hrtA_2	hypothetical protein/Putative hemin import ATP‑binding protein HrtA

Only 100 of 293 total aligned reads displayed.

CAAGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTTATACTACTATGTCTTAAAT  >  USA300TCH1516_ALE/2478975‑2479155

cAAGCTATATGCATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCtttttt                                                                                            <  2:5651757/91‑1 (MQ=255)

  aGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTAc                                                                                          <  1:3999491/91‑1 (MQ=255)

  aGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTAc                                                                                          <  2:4280906/91‑1 (MQ=255)

   gCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACa                                                                                         >  2:1797305/1‑91 (MQ=255)

      atatGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTg                                                                                      >  2:1537667/1‑91 (MQ=40)

         tGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCt                                                                                   >  1:4059347/1‑91 (MQ=37)

             tGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGa                                                                               >  1:1436133/1‑91 (MQ=32)

             tGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGa                                                                               >  2:2085304/1‑91 (MQ=32)

                           cATTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAg                                                                 <  1:2012883/91‑1 (MQ=31)

                           cATTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAACTTTTTTACATTGCCTAAGAACTTAATGTCCCAg                                                                 >  1:1341/1‑91 (MQ=14)

                            aTTATAAAATTCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTATTACATTGCCTAAGAACTTAATGTCCCAGc                                                                <  2:4484980/91‑1 (MQ=12)

                            aTTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGc                                                                <  2:1510257/91‑1 (MQ=32)

                            aTTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGc                                                                <  1:739730/91‑1 (MQ=32)

                            aTTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGc                                                                <  2:3838201/91‑1 (MQ=32)

                             ttATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGcc                                                               <  2:3545588/91‑1 (MQ=33)

                             ttATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGcc                                                               >  2:3059250/1‑91 (MQ=33)

                              tataAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCt                                                              <  2:1671804/91‑1 (MQ=34)

                                 aaaaTACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGtt                                                           <  1:3027414/91‑1 (MQ=38)

                                  aaaTACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGttt                                                          >  1:2076363/1‑91 (MQ=39)

                                  aaaTACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGttt                                                          >  2:3470323/1‑91 (MQ=38)

                                   aaTACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGtttt                                                         >  2:2471074/1‑91 (MQ=39)

                                    aTACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTgatatgtattttataatgtacagctcgttgagctgc                                                        <  2:4858061‑M2/91‑37 (MQ=255)

                                    aTACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGttttt                                                        >  1:3655629/1‑91 (MQ=255)

                                      aCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAACTCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTg                                                      >  2:5216750/1‑91 (MQ=255)

                                      aCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTg                                                      >  1:619171/1‑91 (MQ=255)

                                       cATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGt                                                     >  2:3094215/1‑91 (MQ=255)

                                       cATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGt                                                     >  2:2194165/1‑91 (MQ=255)

                                         tatCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTaa                                                   <  1:2547545/91‑1 (MQ=255)

                                         tatCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTaa                                                   <  2:4930443/91‑1 (MQ=255)

                                          atCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTaaa                                                  >  2:5101766/1‑91 (MQ=255)

                                           tCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAAc                                                 >  1:5232129/1‑91 (MQ=255)

                                            cAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAACGTCCCAGCCTGTTTTTTGTAAAcc                                                <  1:3544971/91‑1 (MQ=255)

                                            aaaaaaaGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAAcc                                                <  2:699273/90‑1 (MQ=255)

                                              aaaaaGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCa                                              <  2:5306913/91‑1 (MQ=255)

                                              aaaaaGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCa                                              <  1:1974102/91‑1 (MQ=255)

                                                aaaGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCaaa                                            <  2:2144978/91‑1 (MQ=255)

                                                aaaGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCaaa                                            <  1:3524646/91‑1 (MQ=255)

                                                aaaGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCaaa                                            <  2:5564420/91‑1 (MQ=255)

                                                   gCTGATTTCTATCAAATAATTAATAGAAATCAGTTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACTCAAATCg                                         >  1:5609851/1‑91 (MQ=255)

                                                   gCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCg                                         >  2:4369484/1‑91 (MQ=255)

                                                   gCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCg                                         >  1:4790216/1‑91 (MQ=255)

                                                    cTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTgatatgtattttataatgtacagctcgttgagctgctattttccttatatta                                        <  2:2533606‑M2/91‑53 (MQ=255)

                                                     tGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTa                                       <  2:1201782/91‑1 (MQ=255)

                                                      gATTTCTATCAAATAATTAATAGAATTCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTATAAACCCACATCGTAt                                      >  2:5387493/1‑91 (MQ=18)

                                                      gATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTgatatgtattttataatgtacagctcgttgagctgctattttccttatattaat                                      <  1:4965579‑M2/91‑55 (MQ=255)

                                                      gATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTAt                                      >  1:4543277/1‑91 (MQ=255)

                                                      gATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTAt                                      >  1:5148643/1‑91 (MQ=255)

                                                      gATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCCGTTTTTTGTAAACACACATCGTAt                                      >  2:4746079/1‑91 (MQ=255)

                                                       aTTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCACATCGTAtt                                     >  2:4614049/1‑91 (MQ=255)

                                                        tttCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTc                                    <  2:2652443/91‑1 (MQ=255)

                                                        tttCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTc                                    >  2:2522649/1‑91 (MQ=255)

                                                           cTATCAAATAATTAATAGAAATCAGCTTTTTTgatatgtattttataatgtacagctcgttgagctgctattttccttatattaagtgcca                                 <  2:2036271‑M2/91‑60 (MQ=255)

                                                            tATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGtt                                >  1:676844/1‑91 (MQ=255)

                                                            tATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGtt                                <  1:5056920/91‑1 (MQ=255)

                                                             aTCAAATAATTAATAGAAATCAGCTTTTTTgatatgtattttataatgtacagctcgttgagctgctattttccttatattaagtgccatt                               <  2:4045468‑M2/91‑62 (MQ=255)

                                                             aTCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTa                               >  1:5413964/1‑91 (MQ=255)

                                                             aTCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTa                               >  2:5501787/1‑91 (MQ=255)

                                                              tCAAATAATTCATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTAt                              <  2:4500437/91‑1 (MQ=255)

                                                              tCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTAt                              >  2:1054668/1‑91 (MQ=255)

                                                              tCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTAt                              <  1:151592/91‑1 (MQ=255)

                                                              tCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTAt                              <  1:2955165/91‑1 (MQ=255)

                                                              tCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAACACTTATTTTCCCAGCCCGTTTTTTTTAAACATTTATCATATTCTGTTAt                              >  2:3232104/1‑91 (MQ=14)

                                                               cAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCGAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATc                             <  2:3318709/91‑1 (MQ=255)

                                                               cAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATc                             <  1:1630101/91‑1 (MQ=255)

                                                               cAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATc                             <  1:1724276/91‑1 (MQ=255)

                                                               cAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATc                             >  1:2813152/1‑91 (MQ=255)

                                                                  ataatTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTaa                          >  1:3196165/1‑91 (MQ=255)

                                                                  ataatCAATAGAAATCAGCTTTTTTACATTGCCTACGCACTTAATGCCCCAGCATGTCTTTTGTACACCCAAACCGTGTTCTCTTACCTaa                          >  2:4329406/1‑91 (MQ=17)

                                                                   taattaatAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAAc                         <  2:41436/91‑1 (MQ=255)

                                                                   taagtaatAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAAc                         <  2:2781066/91‑1 (MQ=255)

                                                                    aattaatAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACt                        <  1:924703/91‑1 (MQ=255)

                                                                    aattaatAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACt                        <  1:2233318/91‑1 (MQ=255)

                                                                      ttaatAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACttt                      <  1:4146182/91‑1 (MQ=255)

                                                                      ttaatAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACttt                      <  1:5441474/91‑1 (MQ=255)

                                                                      ttaatAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACttt                      >  1:2859596/1‑91 (MQ=255)

                                                                       taatAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACtttt                     <  1:5302674/91‑1 (MQ=255)

                                                                       taatAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACtttt                     <  1:3479638/91‑1 (MQ=255)

                                                                        aatAGAAATCAGCTTTTTTACATTTCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTta                    >  2:4631208/1‑91 (MQ=255)

                                                                        aatAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTta                    >  1:4208854/1‑91 (MQ=255)

                                                                         atAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTtat                   >  2:3911222/1‑91 (MQ=255)

                                                                         atAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTtat                   <  2:804716/91‑1 (MQ=255)

                                                                          tAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTtata                  <  2:3026864/91‑1 (MQ=255)

                                                                            gAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTTAtact                <  2:1386885/91‑1 (MQ=255)

                                                                             aaaTCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCGAATCGTATTCTGTTATCTAACTTTTAtacta               <  1:3858702/91‑1 (MQ=255)

                                                                             aaaTCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTTAtacta               <  1:2670167/91‑1 (MQ=255)

                                                                             aaaTCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTTAtacta               <  2:2504097/91‑1 (MQ=255)

                                                                              aaTCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTTAtactac              <  1:3440393/91‑1 (MQ=255)

                                                                                tCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTTATActacta            <  2:1931432/91‑1 (MQ=255)

                                                                                  aGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTTATACTACTATg          <  1:1099981/91‑1 (MQ=255)

                                                                                  aGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTTATACTACTATg          >  2:3402301/1‑91 (MQ=255)

                                                                                  aGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTTATACTACTATg          <  2:2880220/91‑1 (MQ=255)

                                                                                  aGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTTATACTACTATg          >  1:2705496/1‑91 (MQ=255)

                                                                                    cTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTTATACTACTATGTc        <  1:470154/91‑1 (MQ=255)

                                                                                    cTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTTATACTACTATGTc        >  1:2128958/1‑91 (MQ=255)

                                                                                     ttttttACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTTATACTACTATGTCt       <  2:3695726/91‑1 (MQ=255)

                                                                                     ttttttACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTTATACTACTATGTCt       <  2:1318040/91‑1 (MQ=255)

                                                                                     ttttttACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTTATACTACTATGTCt       <  1:4610215/91‑1 (MQ=255)

                                                                                     ttttttACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTTATACTACTATGTCt       <  1:1054168/91‑1 (MQ=255)

                                                                                      tttttACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTTATACTACTATGTCtt      >  1:2357136/1‑91 (MQ=255)

                                                                                         ttACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTTATACTACTATGTCTTaaa   <  2:1341/91‑1 (MQ=255)

CAAGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTTATACTACTATGTCTTAAAT  >  USA300TCH1516_ALE/2478975‑2479155

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.