BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	365029 =	235 (0.820)	13 (0.050)	11/136	NT	5.7%	intergenic (+39/+66)	nupC_1/sglT	Nucleoside permease NupC/Sodium/glucose cotransporter
*	?	USA300TCH1516_ALE	365083 =	233 (0.960)	13 (0.050)	11/136	NT	5.7%	intergenic (+93/+12)	nupC_1/sglT	Nucleoside permease NupC/Sodium/glucose cotransporter

Only 100 of 393 total aligned reads displayed.

GAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTT  >  USA300TCH1516_ALE/364993‑365173

 aaTCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTa                                                                                           >  1:4787726/1‑91 (MQ=255)

 aaTCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTa                                                                                           <  1:3811904/91‑1 (MQ=255)

  aTCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTAt                                                                                          >  1:5380112/1‑91 (MQ=255)

  aTCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTAt                                                                                          >  1:596023/1‑91 (MQ=255)

   tCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATc                                                                                         >  1:1003268/1‑91 (MQ=255)

    cGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCa                                                                                        >  1:1804289/1‑91 (MQ=255)

     gAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCAt                                                                                       <  1:560902/91‑1 (MQ=255)

      aaGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATa                                                                                      >  1:932795/1‑91 (MQ=255)

       aGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATaa                                                                                     >  2:452524/1‑91 (MQ=255)

        gTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAAc                                                                                    >  1:4656651/1‑91 (MQ=255)

         tACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACa                                                                                   >  1:5108797/1‑91 (MQ=255)

          aCCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACaa                                                                                  >  2:2554290/1‑91 (MQ=255)

          aCCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACaa                                                                                  <  2:4850924/91‑1 (MQ=255)

           ccTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAAt                                                                                 >  1:534598/1‑91 (MQ=255)

           ccTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAAt                                                                                 >  2:5307185/1‑91 (MQ=255)

               aattaaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGCTTTATCATAACAATCTAc                                                                             >  1:341480/1‑91 (MQ=255)

                 ttaaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACtt                                                                           >  1:2927120/1‑91 (MQ=255)

                  taaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACttt                                                                          <  1:1007882/91‑1 (MQ=255)

                  taaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACttt                                                                          <  1:551660/91‑1 (MQ=255)

                   aaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCACCATAACTTAGTGACGGGGTTTTATCATAACAATCTACtttt                                                                         >  2:5628860/1‑91 (MQ=255)

                    aattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACttttt                                                                        >  2:3758695/1‑91 (MQ=255)

                     attCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTc                                                                       >  2:1311647/1‑91 (MQ=255)

                      ttCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCg                                                                      >  1:3149738/1‑91 (MQ=255)

                       tCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGt                                                                     >  1:508060/1‑91 (MQ=255)

                       tCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGt                                                                     >  2:2822194/1‑91 (MQ=255)

                        cATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTa                                                                    >  1:761476/1‑91 (MQ=255)

                        cATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTa                                                                    <  1:2711573/91‑1 (MQ=255)

                           ggCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATTATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGcc                                                                 <  1:1311252/91‑1 (MQ=255)

                           ggCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGcc                                                                 >  1:1917570/1‑91 (MQ=255)

                            gCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCg                                                                <  1:3686814/91‑1 (MQ=255)

                            gCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCg                                                                <  2:753228/91‑1 (MQ=255)

                             cAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGt                                                               >  2:1034047/1‑91 (MQ=255)

                             cAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGt                                                               >  2:2971060/1‑91 (MQ=255)

                              aaaGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGtt                                                              <  2:2394938/91‑1 (MQ=255)

                                aGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGtttt                                                            >  2:4750691/1‑91 (MQ=255)

                                aGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGtttt                                                            >  2:695834/1‑91 (MQ=255)

                                  cTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTg                                                          <  2:1867068/91‑1 (MQ=255)

                                   tAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGa                                                         <  2:2906071/91‑1 (MQ=255)

                                     AACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGaaa                                                       <  1:5297195‑M1/91‑1 (MQ=255)

                                     AACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGaaa                                                       <  2:83453‑M1/91‑1 (MQ=255)

                                      ACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAat                                                      <  2:4019377‑M1/91‑1 (MQ=255)

                                       CCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatg                                                     <  1:1675106‑M1/91‑1 (MQ=255)

                                       CCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatg                                                     >  1:3614317‑M1/1‑91 (MQ=255)

                                        CCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGATGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgt                                                    >  1:5484034‑M1/1‑91 (MQ=255)

                                        CCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgt                                                    <  1:3501374‑M1/91‑1 (MQ=255)

                                          CGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgtat                                                  <  2:4085794‑M1/91‑1 (MQ=255)

                                            tcactaagttatgatgcgctgttgcgccaacttggtgacggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgtatgt                                                >  2:2234616‑M2/47‑91 (MQ=255)

                                            TCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgtatgt                                                >  1:1156604‑M1/1‑91 (MQ=255)

                                            TCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgtatgt                                                <  2:497449‑M1/91‑1 (MQ=255)

                                             CACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGtt                                               <  1:2846294‑M1/91‑1 (MQ=255)

                                              actaagttatgatgcgctgttgcgccaacttggtgacggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTg                                              >  2:1609713‑M2/45‑91 (MQ=255)

                                               CCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGa                                             >  1:4991277‑M1/1‑91 (MQ=255)

                                               CCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGa                                             <  1:3763933‑M1/91‑1 (MQ=255)

                                                 aagttatgatgcgctgttgcgccaacttggtgacggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGCTg                                           >  2:1777793‑M2/42‑91 (MQ=255)

                                                 aaGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATg                                           >  2:2707978/1‑91 (MQ=255)

                                                  aGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAATAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATgg                                          >  1:5498756/1‑91 (MQ=255)

                                                  aGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATgg                                          <  2:4603824/91‑1 (MQ=255)

                                                  aGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATgg                                          <  2:199199/91‑1 (MQ=255)

                                                    ttatgatgcgctgttgcgccaacttggtgacggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGtt                                        >  2:3149459‑M2/39‑91 (MQ=255)

                                                     tGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGttt                                       <  1:966047/91‑1 (MQ=255)

                                                     tGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGttt                                       <  2:2064290/91‑1 (MQ=255)

                                                        cgcAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATc                                    >  1:1346395/1‑91 (MQ=255)

                                                        cgcAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATc                                    >  1:3228599/1‑91 (MQ=255)

                                                         gcAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCTGTTTTTGAAATGTATGTTGATGGTTTATCt                                   >  2:5127818/1‑91 (MQ=255)

                                                         gcAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCt                                   >  1:4101802/1‑91 (MQ=255)

                                                         atgcgctgttgcgccaacttggtgacggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCt                                   >  2:351877‑M2/34‑91 (MQ=255)

                                                          cAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCtt                                  <  1:5179683/91‑1 (MQ=255)

                                                          aaaaaGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTATTTAAAATGTATATAGATGGTTTATCtt                                  <  2:1184678/87‑1 (MQ=255)

                                                            aCAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCtttt                                >  1:328480/1‑91 (MQ=255)

                                                            aCAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCtttt                                >  2:2543325/1‑91 (MQ=255)

                                                              aGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTc                              <  1:56651/91‑1 (MQ=255)

                                                              aGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTc                              <  2:3315246/91‑1 (MQ=255)

                                                                 gcATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCaaa                           >  1:833194/1‑91 (MQ=255)

                                                                  catcatAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCaaaa                          >  2:3094377/1‑91 (MQ=255)

                                                                  catcatAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCaaaa                          >  1:1583672/1‑91 (MQ=255)

                                                                    tcatAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAAt                        <  2:1093604/91‑1 (MQ=255)

                                                                     catAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAAtt                       <  1:330979/91‑1 (MQ=255)

                                                                     catAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAAtt                       <  2:556889/91‑1 (MQ=255)

                                                                     catAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAAtt                       >  1:4425251/1‑91 (MQ=255)

                                                                       tAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTAAAATAATCAAAAATTGt                     <  2:1660371/91‑1 (MQ=255)

                                                                        aaCTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGtt                    <  1:4580376/91‑1 (MQ=255)

                                                                        aaCTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGtt                    >  1:4224095/1‑91 (MQ=255)

                                                                        aaCTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGtt                    <  2:5387421/91‑1 (MQ=255)

                                                                        aaCTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGtt                    <  2:4201746/91‑1 (MQ=255)

                                                                        aaCTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTGGATGGTTTATCTTTTTCAAAAATTGtt                    <  1:1401853/91‑1 (MQ=255)

                                                                         aCTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTa                   >  2:3916740/1‑91 (MQ=255)

                                                                          cTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTaa                  <  2:3232708/91‑1 (MQ=255)

                                                                          cTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTaa                  <  2:1502161/91‑1 (MQ=255)

                                                                           ttAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAAt                 <  1:686543/91‑1 (MQ=255)

                                                                           ttAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAAt                 <  1:3974079/91‑1 (MQ=255)

                                                                            tAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATc                >  1:2284761/1‑91 (MQ=255)

                                                                            tAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATc                >  1:3060214/1‑91 (MQ=255)

                                                                              gtgacggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATccc              <  2:2048064‑M2/79‑1 (MQ=255)

                                                                                gacggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGt            <  1:2051294‑M2/81‑1 (MQ=255)

                                                                                  cggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTta          >  1:3091601‑M2/9‑91 (MQ=255)

                                                                                   ggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTtat         >  1:2638603‑M2/8‑91 (MQ=255)

                                                                                    gggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTtata        <  2:2794180‑M2/85‑1 (MQ=255)

                                                                                      gtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATc      >  1:4880492‑M2/5‑91 (MQ=255)

                                                                                        ttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATTTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCtt    <  2:1238976‑M2/89‑1 (MQ=255)

                                                                                         tTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCttt   <  1:2553723‑M2/90‑1 (MQ=255)

GAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTT  >  USA300TCH1516_ALE/364993‑365173

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.