BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1181842 =	245 (0.850)	13 (0.050)	8/144	NT	6.1%	intergenic (+409/+65)	USA300HOU_RS05885/USA300TCH1516_01103	hypothetical protein/tRNA‑Arg
*	?	USA300TCH1516_ALE	1181881 =	178 (0.690)	13 (0.050)	8/144	NT	6.1%	intergenic (+448/+26)	USA300HOU_RS05885/USA300TCH1516_01103	hypothetical protein/tRNA‑Arg

Only 100 of 280 total aligned reads displayed.

CTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGAG  >  USA300TCH1516_ALE/1181791‑1181971

cTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTtttgtttg                                                                                            >  1:985722/1‑91 (MQ=255)

cTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTtttgtttg                                                                                            <  2:5199105/91‑1 (MQ=255)

cTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTtttgtttg                                                                                            <  1:1975546/91‑1 (MQ=255)

 ttATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTgg                                                                                           >  1:3383354/1‑91 (MQ=255)

 ttATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTgg                                                                                           >  1:2965545/1‑91 (MQ=255)

  tATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGt                                                                                          >  1:1889597/1‑91 (MQ=255)

   aTGCGGGGGACGTTTTGGTGACGCCTCATACTATATTAATGAAATTCAAAACAACAAGAGCCCCGTAATCACGGAACTCTTTTGATTGGTa                                                                                         >  2:2548172/1‑91 (MQ=255)

    tGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTaa                                                                                        <  1:1171165/91‑1 (MQ=255)

    tGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTaa                                                                                        <  2:601517/91‑1 (MQ=255)

     gCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAAt                                                                                       >  1:2863946/1‑91 (MQ=255)

       gggtgACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGc                                                                                     <  2:5523385/91‑1 (MQ=255)

        gtggACGGGTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGGTTGGTAATGCg                                                                                    <  2:5618723/89‑1 (MQ=255)

        ggggACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCg                                                                                    <  2:3710460/91‑1 (MQ=255)

          ggACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGta                                                                                  <  1:1279264/91‑1 (MQ=255)

          ggACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGta                                                                                  >  1:1380498/1‑91 (MQ=255)

          ggACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGta                                                                                  <  2:666577/91‑1 (MQ=255)

          ggACATTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGta                                                                                  <  2:2507603/91‑1 (MQ=255)

           gACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGtat                                                                                 <  2:1290082/91‑1 (MQ=255)

            gcGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGtata                                                                                <  1:5116896/90‑1 (MQ=255)

              gTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATaaa                                                                              >  1:4542913/1‑91 (MQ=255)

               ttttGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATaaaa                                                                             >  1:857068/1‑91 (MQ=255)

                tttGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATaaaaa                                                                            >  2:5148823/1‑91 (MQ=255)

                tttGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATaaaaa                                                                            >  2:4881645/1‑91 (MQ=255)

                 ttGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAAt                                                                           <  2:1994103/91‑1 (MQ=255)

                  tGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATa                                                                          <  2:2780582/91‑1 (MQ=255)

                  tGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATa                                                                          <  1:1838277/91‑1 (MQ=255)

                   ggTGACGCATCATACTATATTACTGAAATTTAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATAc                                                                         <  1:4352023/91‑1 (MQ=255)

                      gACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCta                                                                      <  1:475768/91‑1 (MQ=255)

                      aaCGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCta                                                                      <  2:5031334/90‑1 (MQ=255)

                           atcatACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAAc                                                                 <  1:3791742/91‑1 (MQ=255)

                           atcatACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAAc                                                                 <  1:4496519/91‑1 (MQ=255)

                             catACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGt                                                               <  2:1390385/91‑1 (MQ=255)

                             catACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGt                                                               <  1:3930379/91‑1 (MQ=255)

                                  tataTTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgg                                                          <  1:1686534/91‑1 (MQ=255)

                                    tatTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTggga                                                        >  1:1616508/1‑91 (MQ=255)

                                     atTACTGAAATTCAAAACAACAAGAGCCCCGTAAATACGGAACTCTTTTGTTTGGTCATGCGTATCAAAATACCTATAAACGTCCTgggtg                                                       <  2:4726642/91‑3 (MQ=255)

                                     atTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgggag                                                       <  2:1256265/91‑1 (MQ=255)

                                      ttACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgggagg                                                      <  1:28386/91‑1 (MQ=255)

                                      ttACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgggagg                                                      <  2:4959127/91‑1 (MQ=255)

                                       tACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgggaggg                                                     >  2:2694861/1‑91 (MQ=255)

                                        aCTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgggaggga                                                    <  1:2158647/91‑1 (MQ=255)

                                               ttCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAc                                             >  1:2051825/1‑91 (MQ=255)

                                               ttCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAc                                             <  2:4216385/91‑1 (MQ=255)

                                                 ccaaacaaaagagttccgtgattacggggctctttttgtttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAccc                                           >  1:5518260‑M2/42‑91 (MQ=255)

                                                   AAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAccccc                                         >  2:4536142‑M1/1‑91 (MQ=255)

                                                   AAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAccccc                                         <  1:1358773‑M1/91‑1 (MQ=255)

                                                   AAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAccccc                                         <  1:365760‑M1/91‑1 (MQ=255)

                                                     ACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCccga                                       <  2:3077270‑M1/91‑1 (MQ=255)

                                                     ACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCccga                                       <  2:4061439‑M1/91‑1 (MQ=255)

                                                     ACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCccga                                       <  2:1214536‑M1/91‑1 (MQ=255)

                                                     ACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCccga                                       >  2:89251‑M1/1‑91 (MQ=255)

                                                      CAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCccgac                                      <  1:1461954‑M1/91‑1 (MQ=255)

                                                      CAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCccgac                                      >  1:4300092‑M1/1‑91 (MQ=255)

                                                       AAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCccgacc                                     >  1:731826‑M1/1‑91 (MQ=255)

                                                        AAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCccgaccg                                    >  1:1042026‑M1/1‑91 (MQ=255)

                                                        AAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCccgaccg                                    >  2:3839739‑M1/1‑91 (MQ=255)

                                                        AAAAGAGACCCATAATCACGGAACTCTTTTGTTTGGTACTGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCccgaccg                                    <  1:5431399‑M1/91‑1 (MQ=255)

                                                         AAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCtcgaccga                                   <  1:4089630‑M1/91‑1 (MQ=255)

                                                         AAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCccgaccga                                   <  2:4688638‑M1/91‑1 (MQ=255)

                                                         AAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCccgaccga                                   <  2:3232566‑M1/91‑1 (MQ=255)

                                                          AAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGAt                                  <  1:543651‑M1/91‑1 (MQ=255)

                                                          AAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGAt                                  >  2:1776875‑M1/1‑91 (MQ=255)

                                                           gagttccgtgattacggggctctttttgtttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATg                                 >  1:727965‑M2/32‑91 (MQ=255)

                                                           agagCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATg                                 <  1:682209/91‑1 (MQ=255)

                                                           agagCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATg                                 >  2:3332743/1‑91 (MQ=255)

                                                            gagCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATgg                                >  2:4023309/1‑91 (MQ=255)

                                                             gttccgtgattacggggctctttttgtttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGc                               >  2:4116321‑M2/30‑91 (MQ=255)

                                                             gttccgtgattacggggctctttttgtttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGc                               >  2:3815536‑M2/30‑91 (MQ=255)

                                                             agttccgtgattacggggctcttttgtttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGc                               >  1:385895‑M2/30‑91 (MQ=255)

                                                             agCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGc                               >  1:1252830/1‑91 (MQ=255)

                                                             agCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGc                               >  2:3910483/1‑91 (MQ=255)

                                                               ccccGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCtt                             >  2:2430394/1‑91 (MQ=255)

                                                                cccGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTa                            >  1:3236330/1‑91 (MQ=255)

                                                                cccGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTa                            >  2:1660515/1‑91 (MQ=255)

                                                                cccGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTa                            >  2:1747172/1‑91 (MQ=255)

                                                                cccGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTa                            >  1:2560523/1‑91 (MQ=255)

                                                                  cGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGa                          >  1:2758503/1‑91 (MQ=255)

                                                                  cGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGa                          <  1:5530605/91‑1 (MQ=255)

                                                                    tAACCACGGAACTCTTGTGTTTGGTAATGCGTATAAAAATACCTATAATCGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAg                        <  2:4337435/91‑1 (MQ=255)

                                                                     aaTCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAgg                       <  1:2475188/91‑1 (MQ=255)

                                                                      aTCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGc                      <  1:501953/91‑1 (MQ=255)

                                                                         aCGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCAt                   >  2:3160574/1‑91 (MQ=255)

                                                                          cGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCAtt                  >  2:3531296/1‑91 (MQ=255)

                                                                          cGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCAtt                  >  1:320681/1‑91 (MQ=255)

                                                                          cGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCAtt                  >  1:3582555/1‑91 (MQ=255)

                                                                          cGGAACTCTTTTGTTTGCTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCAtt                  >  1:5475735/1‑91 (MQ=255)

                                                                             aaCTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGct               >  2:712312/1‑91 (MQ=255)

                                                                              aCTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGctc              >  1:535754/1‑91 (MQ=255)

                                                                               ctctTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGctct             >  2:2103687/1‑91 (MQ=255)

                                                                                tctTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTa            <  1:382109/91‑1 (MQ=255)

                                                                                 ctTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTAt           <  1:3465832/91‑1 (MQ=255)

                                                                                 ctTTTGTTTGGTAATGCGTATAAAAATACCTAGAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTAt           <  1:3628409/91‑1 (MQ=255)

                                                                                  ttttgtttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATc          >  2:3393740‑M2/9‑91 (MQ=255)

                                                                                   tttgtttGGTGATGCGTATAAAAATACCTATAAGCGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTCAGAAGGCCATTGCTCTATcc         <  1:5157984‑M2/84‑1 (MQ=255)

                                                                                   tttgtttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATcc         >  1:2480621‑M2/8‑91 (MQ=255)

                                                                                      gtttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGc      <  1:2710151‑M2/87‑1 (MQ=255)

                                                                                         tGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGa   <  1:1938178‑M2/90‑1 (MQ=255)

                                                                                         tGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGa   >  2:379913‑M2/2‑91 (MQ=255)

                                                                                         tGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCACTATCCAGCTGa   >  2:3750748‑M2/2‑91 (MQ=255)

                                                                                          ggTAATGCGTATAAAAATACCTATAAACGTCATGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGAg  <  1:5239479/91‑1 (MQ=255)

CTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGAG  >  USA300TCH1516_ALE/1181791‑1181971

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.