New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000731 = 12551NA (NA)82 (0.110) 20/170 27.5 22.6% coding (45/675 nt) USA300HOU_pUSA300HOUMR0016 IS257 transposase
?USA300TCH1516_ALE 36492 = 297 (0.900)coding (60/675 nt) USA300HOU_RS00140 hypothetical protein
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 1175 total aligned reads displayed.

TTGAATTTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCA  >  CP000731/12466‑12641
                                                                                     |                                                                                          
 tGAATTTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCt                                                                                      >  1:5278828/1‑91 (MQ=31)
  gAATTTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTg                                                                                     >  2:309880/1‑91 (MQ=32)
   aaTTTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGt                                                                                    >  1:5825413/1‑91 (MQ=33)
   aaTTTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGt                                                                                    >  2:1056762/1‑91 (MQ=33)
    aTTTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGtt                                                                                   >  2:954383/1‑91 (MQ=34)
    aTTTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGtt                                                                                   >  1:453708/1‑91 (MQ=34)
    aTTTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGtt                                                                                   <  1:2648578/91‑1 (MQ=34)
    aTTTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGtt                                                                                   >  2:2730273/1‑91 (MQ=33)
    aTTTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGtt                                                                                   >  1:1008074/1‑91 (MQ=33)
    aTTTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGtt                                                                                   >  2:1491990/1‑91 (MQ=34)
        ataGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGct                                                                               <  1:5083790/91‑1 (MQ=33)
         taGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTATCTGTTGGcta                                                                              >  2:843812/1‑91 (MQ=18)
         taGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGcta                                                                              <  1:3749128/91‑1 (MQ=34)
         taGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGcta                                                                              >  2:4177758/1‑91 (MQ=34)
         taGTATAATTTAAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGcta                                                                              <  2:2971175/91‑1 (MQ=21)
          aGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGCTATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGctac                                                                             <  1:4382785/91‑1 (MQ=21)
           gTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGctact                                                                            >  1:4928200/1‑91 (MQ=34)
              taATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATc                                                                         >  2:340221/1‑91 (MQ=33)
               aaTTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCt                                                                        <  2:557530/91‑1 (MQ=34)
               aaTTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCt                                                                        >  2:3982215/1‑91 (MQ=33)
                  tttAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAg                                                                     <  2:3680023/91‑1 (MQ=34)
                     aaCAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGata                                                                  >  2:2203612/1‑91 (MQ=34)
                     aaCAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGata                                                                  <  1:2006541/91‑1 (MQ=34)
                     aaCAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGata                                                                  <  2:2321016/91‑1 (MQ=34)
                     aaCAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGata                                                                  >  1:734575/1‑91 (MQ=34)
                     aaCAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGata                                                                  <  1:4779546/91‑1 (MQ=34)
                      aCAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGatat                                                                 >  2:5201048/1‑91 (MQ=33)
                      aCAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGatat                                                                 >  2:599371/1‑91 (MQ=34)
                       cAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATg                                                                >  2:4558650/1‑91 (MQ=33)
                       cAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATg                                                                <  1:1429574/91‑1 (MQ=34)
                        aaaaaGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGc                                                               >  1:5733485/1‑91 (MQ=34)
                        aaaaaGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGc                                                               <  2:137140/91‑1 (MQ=34)
                         aaaaGGAGTCTTCTGTATGCACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGATGTTGGCTACTATCTAAGATATGCa                                                              >  2:5412725/1‑91 (MQ=16)
                           aaGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCAtt                                                            >  2:122383/1‑91 (MQ=33)
                            aGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTg                                                           <  2:4675670/91‑1 (MQ=34)
                             ggAGTCTTCTGTATGAACTATTTCAGATATAAACCATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGa                                                          >  2:3446185/1‑91 (MQ=21)
                              gAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAg                                                         >  1:383826/1‑91 (MQ=34)
                              gAGTCTTCTGTATGAACTATTTCAGATATAAACAATGTAACAAGGATGTTATCACTGTAGCTTTTGGCTACTATCTAAGATATGCATTGAg                                                         <  1:2858927/91‑1 (MQ=16)
                               aGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGt                                                        <  1:977486/91‑1 (MQ=34)
                               aGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGt                                                        <  2:1655348/91‑1 (MQ=34)
                               aGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGt                                                        <  1:332850/91‑1 (MQ=34)
                               aGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGt                                                        <  1:3435536/91‑1 (MQ=34)
                               aGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGt                                                        <  2:4303288/91‑1 (MQ=34)
                                gTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGtt                                                       <  1:1910352/91‑1 (MQ=34)
                                 tcttctGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTa                                                      >  1:3151023/1‑91 (MQ=34)
                                   ttctGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATACGCATTGAg                                                         <  2:5755250/86‑1 (MQ=25)
                                    tctGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCg                                                   <  2:3870949/91‑1 (MQ=34)
                                       gTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCATTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGa                                                <  2:5644715/91‑1 (MQ=21)
                                       gTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGa                                                >  2:2609873/1‑91 (MQ=34)
                                       gTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGa                                                <  1:3622772/91‑1 (MQ=34)
                                         aTGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGata                                              <  1:2514350/91‑1 (MQ=34)
                                         aTGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGata                                              <  1:3919918/91‑1 (MQ=34)
                                         aTGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGata                                              <  1:4996195/91‑1 (MQ=34)
                                          tGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGatat                                             >  1:5434417/1‑91 (MQ=34)
                                            aaCTATTTCAGATATAAACAATTTATCAAGGATGATATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGatatat                                           >  2:4878373/1‑91 (MQ=16)
                                            aaCTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGatatat                                           >  1:550442/1‑91 (MQ=34)
                                             aCTATTTCAGATATAAACAATTTAACAAGTATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATc                                          <  2:2463737/91‑1 (MQ=21)
                                             aCTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATc                                          <  1:2993796/91‑1 (MQ=34)
                                              cTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCt                                         >  2:3218166/1‑91 (MQ=33)
                                               tATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTg                                        >  2:1811687/1‑91 (MQ=33)
                                                aTTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTTGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGa                                       <  2:1104109/91‑1 (MQ=18)
                                                aTTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGa                                       >  2:3296000/1‑91 (MQ=34)
                                                aTTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGa                                       >  2:3586836/1‑91 (MQ=34)
                                                aTTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGa                                       <  2:2850839/91‑1 (MQ=34)
                                                aTTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGa                                       <  1:522375/91‑1 (MQ=34)
                                                 tttCAGTTATAAACAATTTAACATGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCGTTGAGTTATCGTGATATATCTGaa                                      <  1:4439133/91‑1 (MQ=255)
                                                 tttCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGaa                                      <  1:4082018/91‑1 (MQ=34)
                                                 tttCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGaa                                      <  1:1331803/91‑1 (MQ=34)
                                                 tttCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGaa                                      >  2:1299302/1‑91 (MQ=33)
                                                  ttCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGaaa                                     <  2:479127/91‑1 (MQ=34)
                                                   tCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAat                                    >  1:2256291/1‑91 (MQ=34)
                                                     aGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAatat                                  >  1:196308/1‑91 (MQ=33)
                                                      gATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATAtt                                 >  2:5313831/1‑91 (MQ=34)
                                                      gATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATAtt                                 >  2:4446777/1‑91 (MQ=34)
                                                       atatAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTa                                <  1:2589083/91‑1 (MQ=34)
                                                        tataAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTaa                               <  1:1667449/91‑1 (MQ=34)
                                                          taAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAgg                             >  1:781331/1‑91 (MQ=34)
                                                          taAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATATGAAATATTAAgg                             <  2:681861/91‑1 (MQ=21)
                                                           aaaCAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAggg                            <  2:4972370/91‑1 (MQ=34)
                                                            aaCAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGa                           >  2:3798855/1‑91 (MQ=33)
                                                            aaCAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGa                           >  1:4280781/1‑91 (MQ=34)
                                                            aaCAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGa                           <  1:514319/91‑1 (MQ=34)
                                                            aaCAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGa                           <  1:1564727/91‑1 (MQ=34)
                                                              cAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAAc                         >  1:418846/1‑91 (MQ=34)
                                                               aaTTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACg                        <  1:5619780/91‑1 (MQ=34)
                                                                 tttAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACgtg                      <  1:1494642/91‑1 (MQ=34)
                                                                   tAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACgtggt                    <  2:1925938/91‑1 (MQ=33)
                                                                    aaCAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACgtggtg                   <  1:4666150/91‑1 (MQ=34)
                                                                    aaCAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACgtggtg                   <  1:1826286/91‑1 (MQ=34)
                                                                     aCAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGgtgt                  >  1:940181/1‑91 (MQ=34)
                                                                      cAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTa                 >  1:2394843/1‑91 (MQ=34)
                                                                      cAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTa                 >  1:1236714/1‑91 (MQ=33)
                                                                        aGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTaaa               >  1:1106571/1‑91 (MQ=34)
                                                                           aTGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGt            <  1:3547857/91‑1 (MQ=33)
                                                                            tGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGtt           >  1:2745997/1‑91 (MQ=34)
                                                                             gTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTtc          >  1:214083/1‑91 (MQ=34)
                                                                              ttATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTtca         <  2:4090261/91‑1 (MQ=34)
                                                                               tATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTtcat        <  2:5101370/91‑1 (MQ=34)
                                                                                 tCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTtcatca      <  2:765083/91‑1 (MQ=34)
                                                                                     tGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTcc  >  2:2009571/1‑90 (MQ=18)
                                                                                     |                                                                                          
TTGAATTTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCA  >  CP000731/12466‑12641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.