| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 512969 = | NA (NA) | 68 (0.230) | 20/162 | 26.4 | NA | intergenic (+1037/‑5726) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | 512991 = | NA (NA) | intergenic (+1059/‑5704) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Only 100 of 280 total aligned reads displayed.
ATGTTAGCGGCGGACGGGTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCATTAGC > USA300TCH1516_ALE/512879‑513040 | aTGTTAGCGGCGGACGGGTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAatat > 2:3939252/1‑91 (MQ=34)aTGTTAGCGGCGGACGGGTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAatat < 1:1940207/91‑1 (MQ=34)aTGTTAGCGGCGGACGGGTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAatat < 2:1502604/91‑1 (MQ=34) tGTTAGCGGCGGACGGGTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATAtt > 2:634335/1‑91 (MQ=34) gTTAGCGGCGGACGGGTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATAttt < 2:3499938/91‑1 (MQ=34) ttAGCGGCGGACGGGTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATAtttt > 2:2029746/1‑91 (MQ=34) tAGCGGCGGACGGGTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTg < 2:1154527/91‑1 (MQ=34) cggcggACGGGTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAAc > 2:1470550/1‑91 (MQ=34) ggcggACGGGTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAAcc < 2:77376/91‑1 (MQ=34) gcggACGGGTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCg < 2:1747581/91‑1 (MQ=34) gcggACGGGTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCg > 1:4117678/1‑91 (MQ=34) ggACGGGTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAAccatg < 1:1371081/91‑4 (MQ=21) ggACGGGTGAGTAACACGTGGAGAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCa < 2:4761698/91‑1 (MQ=18) gACGGGTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAAccatgc < 2:724402/91‑5 (MQ=18) gACGGGTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCAt > 1:211774/1‑91 (MQ=34) cGGGTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATgg > 2:1061450/1‑91 (MQ=34) cGGGTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATgg > 1:3554163/1‑91 (MQ=34) cGGGTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATgg < 1:3340382/91‑1 (MQ=34) ggTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGtt > 2:171757/1‑91 (MQ=34) gTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTc < 2:3238494/91‑1 (MQ=34) gTGAGTAACACGTGGATAACCGACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTc < 2:3616686/91‑1 (MQ=18) tGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCa > 1:2939892/1‑91 (MQ=34) tGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCa < 1:4944789/91‑1 (MQ=34) aGTAACACGTGGTTAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCaaa < 2:3772894/91‑1 (MQ=18) aGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCaaa < 1:2462799/91‑1 (MQ=34) tAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAg > 1:3280532/1‑91 (MQ=34) tAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAg < 1:4157417/91‑1 (MQ=34) acacGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTg > 2:5316481/1‑91 (MQ=34) cacGTGGATAACCTACCTATAAGAGTGGGATAACTTCGGGAAACCGTAGCTAATACCGGCTAATATTTTGAACCGCATGGATCAAAAgaga > 2:2219554/1‑91 (MQ=11) cGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCTCATGGTTCAAAAGTGaaa > 1:5721031/1‑91 (MQ=21) gttgATAACCTACCTATAAGACTGGGATAACTTCTTGAAACCGTAGCTAATACCGGCTAATATTTTGAACCGCATGGTTCAAAAGTGAAAg < 2:4860400/88‑1 (MQ=11) gTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAg > 1:2414034/1‑91 (MQ=34) gTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAg > 2:1018313/1‑91 (MQ=34) gTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAg < 1:2993945/91‑1 (MQ=34) gTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAg < 2:254247/91‑1 (MQ=34) gTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAg < 2:5564277/91‑1 (MQ=34) tGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGa < 1:159021/91‑1 (MQ=34) ggATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGAc > 2:1483032/1‑91 (MQ=34) ggATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGAc > 2:1036142/1‑91 (MQ=34) gATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACg > 2:5049868/1‑91 (MQ=34) aTAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACgg < 1:1349108/91‑1 (MQ=34) tAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGt > 1:4686190/1‑91 (MQ=34) tAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGt > 1:2631389/1‑91 (MQ=34) aaCCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTc < 2:4328634/91‑1 (MQ=34) aaCCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTc < 2:3133818/91‑1 (MQ=34) aaCCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTc < 2:1188452/91‑1 (MQ=34) acctacctATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAg > 1:3135484/1‑78 (MQ=35) acctacctATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCt > 1:920275/1‑91 (MQ=34) acctacctATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCt > 2:1335364/1‑91 (MQ=33) acctacctATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCt > 2:2387997/1‑91 (MQ=34) acctacctATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCt < 1:4886709/91‑1 (MQ=34) acctacctATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCt > 2:4944888/1‑91 (MQ=34) cctacctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGTTTCAAAAGTGAAAGACGGTCtt < 2:4441336/91‑1 (MQ=18) ctacctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTg > 2:4981592/1‑91 (MQ=34) tacctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGc < 2:1566423/91‑1 (MQ=34) acctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATATCGGAAAATATTTTGAACCGCATGGTTCAAAAGTGACAGACGGTCTTGCt > 1:5770108/1‑91 (MQ=255) acctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCt < 2:1626444/91‑1 (MQ=34) cctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTg > 1:3575069/1‑91 (MQ=34) cctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTg > 1:71515/1‑91 (MQ=34) ataAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCa < 1:1563132/91‑1 (MQ=34) ataAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCa < 1:4324764/91‑1 (MQ=34) ataAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCa < 1:3725759/91‑1 (MQ=34) aaGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACt < 1:3630083/91‑1 (MQ=34) aGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGCAAGACGGTCTTGCTGTCACtt > 2:4154116/1‑91 (MQ=18) aGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACtt > 1:4442771/1‑91 (MQ=34) aGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATATTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACtt > 2:5629254/1‑91 (MQ=21) aCTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTtat > 2:5333707/1‑91 (MQ=34) aCTGGGATAACTTCGGGAAACCATAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTtat < 2:5742161/91‑1 (MQ=18) gggATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGa < 2:5124542/91‑1 (MQ=34) gggATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGa > 2:869124/1‑91 (MQ=34) ggATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGAt > 2:274339/1‑91 (MQ=34) tAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCGAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGa > 2:1964939/1‑91 (MQ=21) tAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGa < 2:2940117/91‑1 (MQ=33) tAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGa < 2:4998795/91‑1 (MQ=33) aaCTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGAt < 2:1856959/91‑1 (MQ=34) aCTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATc > 1:5251434/1‑91 (MQ=33) ttCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCcg < 2:3263050/91‑1 (MQ=33) ttCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCcg < 1:1989006/91‑1 (MQ=34) cGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCcgcg > 1:1275220/1‑91 (MQ=34) cGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCcgcg > 1:777436/1‑91 (MQ=34) cGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCcgcg < 1:5408842/91‑1 (MQ=34) gggAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCgcgc > 1:1198317/1‑91 (MQ=34) gggAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCgcgc > 1:1434532/1‑91 (MQ=34) gggAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCgcgc < 2:591746/91‑1 (MQ=34) gggAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCgcgc < 2:4686190/91‑1 (MQ=34) gggAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCgcgc > 2:3355724/1‑91 (MQ=34) gggAAACAGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGATCTTGCTGTCACTTATGGATGGATCCgcgc < 1:4622617/91‑1 (MQ=11) ggAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCt > 1:3926132/1‑91 (MQ=34) gAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTg < 2:4192829/91‑1 (MQ=33) aaaCCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTAAAAAGTGAAAGACAGTCTTGCTGTCACTTATAGATGGATCCGCGCTGc < 2:2148865/91‑1 (MQ=16) aCCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCAt < 1:687459/91‑1 (MQ=34) aCCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCAt > 1:2281574/1‑91 (MQ=34) aCCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCAt > 2:2692462/1‑91 (MQ=34) ccGTAGCTAATCCCGGATAATATTTTGAACCGCCTGGTTCAAAAGTGAAAGACGCTCTTGCTGTAACTTATAGATGGATCCGCGCTGCAtt > 2:5154567/1‑91 (MQ=11) ccGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCAtt > 1:5212799/1‑91 (MQ=34) ccGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCAtt > 1:5096045/1‑91 (MQ=34) ccGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCAtt > 1:4487927/1‑91 (MQ=34) ccGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCAtt < 2:4093512/91‑1 (MQ=33) gTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCATTAg < 1:1695792/91‑1 (MQ=32) gTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCATTAg > 2:2911727/1‑91 (MQ=32) | ATGTTAGCGGCGGACGGGTGAGTAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCATTAGC > USA300TCH1516_ALE/512879‑513040 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |