New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 512969 =NA (NA)68 (0.230) 20/162 26.4 NA intergenic (+1037/‑5726) recR/speA_2 Recombination protein RecR/Arginine decarboxylase
?USA300TCH1516_ALE 512991 = NA (NA)intergenic (+1059/‑5704) recR/speA_2 Recombination protein RecR/Arginine decarboxylase
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 202 total aligned reads displayed.

TAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCATTAGC  >  USA300TCH1516_ALE/512901‑513040
                                                                                          |                                                 
tAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAg                                                   <  1:4157417/91‑1 (MQ=34)
tAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAg                                                   >  1:3280532/1‑91 (MQ=34)
tAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAg                                                   <  2:1435734/91‑1 (MQ=34)
  acacGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTg                                                 >  1:4062379/1‑91 (MQ=34)
  acacGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTg                                                 <  2:1102192/91‑1 (MQ=34)
  acacGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGACAATATTTTGAACCGCATGGTTCAAAAGTg                                                 >  1:1313930/1‑91 (MQ=18)
    acGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGaa                                               >  2:1580005/1‑91 (MQ=34)
    acGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGaa                                               >  1:4993643/1‑91 (MQ=34)
    acGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGaa                                               >  1:605948/1‑91 (MQ=34)
      gttgATAACCTACCTATAAGACTGGGATAACTTCTTGAAACCGTAGCTAATACCGGCTAATATTTTGAACCGCATGGTTCAAAAGTGAAAg                                             <  2:4860400/88‑1 (MQ=11)
      gTGGATAGCCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAACATTTTGAACCGCATGGTTCAAAAGTGAAAg                                             <  1:4621784/91‑1 (MQ=255)
      gTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAg                                             <  2:1488616/91‑1 (MQ=34)
      gTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAg                                             <  2:5564277/91‑1 (MQ=34)
      gTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAg                                             <  2:2672040/91‑1 (MQ=34)
      gTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAg                                             <  1:2993945/91‑1 (MQ=34)
      gTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAg                                             >  2:1018554/1‑91 (MQ=34)
       tGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGa                                            <  1:159021/91‑1 (MQ=34)
        ggATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGAc                                           >  2:1036142/1‑91 (MQ=34)
        ggATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGAc                                           >  2:1483032/1‑91 (MQ=34)
        ggATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGAc                                           <  1:1970279/91‑1 (MQ=34)
         gATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTACTACCGGCTAATCTTTTGAACCGCATGGTTCAAAAGTGAAAGAcc                                          >  2:1287176/1‑90 (MQ=11)
         gATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACg                                          >  2:3591765/1‑91 (MQ=34)
         gATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACg                                          >  2:1771026/1‑91 (MQ=34)
         gATAACCTACCTATAAGACTAGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACg                                          >  2:3067859/1‑91 (MQ=21)
          aTAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACgg                                         >  2:3490058/1‑91 (MQ=34)
             acctacctATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAg                                                   <  2:3135484/78‑1 (MQ=35)
             acctacctATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCt                                      >  2:4178829/1‑91 (MQ=33)
             acctacctATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCt                                      >  2:4138632/1‑91 (MQ=34)
             acctacctATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCt                                      >  2:2387997/1‑91 (MQ=34)
              cctacctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGTTTCAAAAGTGAAAGACGGTCtt                                     <  2:4441336/91‑1 (MQ=18)
               ctacctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTg                                    >  2:4981592/1‑91 (MQ=34)
                tacctaTAAGGCTGGGATAACTTCGGGAAGCCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGc                                   <  2:1566377/91‑1 (MQ=16)
                tacctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGc                                   <  2:2390629/91‑1 (MQ=34)
                 acctaTAAGGCTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCt                                  <  2:2332401/91‑1 (MQ=21)
                 acctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCt                                  <  2:5244760/91‑1 (MQ=34)
                 acctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCt                                  >  1:4675239/1‑91 (MQ=34)
                 acctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCt                                  <  2:1626444/91‑1 (MQ=34)
                  cctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTg                                 >  1:3575069/1‑91 (MQ=34)
                  cctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTg                                 >  1:5750309/1‑91 (MQ=34)
                  cctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTg                                 >  1:71515/1‑91 (MQ=34)
                   ctaTAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGt                                <  2:1170049/91‑1 (MQ=33)
                     ataAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCa                              >  2:2157031/1‑91 (MQ=34)
                     ataAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCa                              <  1:4324764/91‑1 (MQ=34)
                     ataAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCa                              <  1:1563132/91‑1 (MQ=34)
                      taAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCAc                             <  1:5637668/91‑1 (MQ=34)
                       aaGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACt                            <  1:3630083/91‑1 (MQ=34)
                       aaGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACt                            >  1:3478324/1‑91 (MQ=34)
                       aaGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATACTTTGAACCGCATGGTTCACAAGAGAAAGACGGTCTTGCTGTCACt                            >  2:5722413/1‑91 (MQ=255)
                        aGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCCCtt                           >  2:2013442/1‑91 (MQ=21)
                        aGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACtt                           >  1:4442771/1‑91 (MQ=34)
                        aGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATATTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACtt                           >  2:5629254/1‑91 (MQ=21)
                         gACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTta                          <  1:3116979/91‑1 (MQ=33)
                         gACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTta                          >  1:3882910/1‑91 (MQ=34)
                         gACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTta                          >  1:2431214/1‑91 (MQ=34)
                         gACGGGGATAACTTCGGCAACCCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAACCGAAAGGCGGGCTTGCTTTCACtca                          <  2:4263511/91‑3 (MQ=11)
                          aCTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTtat                         <  2:5743468/91‑1 (MQ=34)
                          aCTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTtat                         >  1:4896825/1‑91 (MQ=33)
                            tGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAg                       <  1:2341136/91‑1 (MQ=34)
                             gggATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGa                      >  1:2686969/1‑91 (MQ=34)
                             gggATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGa                      <  2:5124542/91‑1 (MQ=34)
                              ggATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGAt                     >  2:689166/1‑91 (MQ=34)
                              ggATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGAt                     >  1:842083/1‑91 (MQ=34)
                              ggATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGAt                     >  1:3696298/1‑91 (MQ=34)
                              ggATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGAt                     >  2:5408842/1‑91 (MQ=34)
                              ggATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGAt                     >  2:274339/1‑91 (MQ=34)
                                aTAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATgg                   <  1:2589801/91‑1 (MQ=34)
                                 tAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGa                  <  2:2940117/91‑1 (MQ=33)
                                 tAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGa                  >  2:5030526/1‑91 (MQ=33)
                                  aaCTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGAt                 <  2:1856959/91‑1 (MQ=34)
                                   aCTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATc                >  1:5251434/1‑91 (MQ=33)
                                   aCTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATc                >  1:775831/1‑91 (MQ=33)
                                     ttCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCcg              <  1:1989006/91‑1 (MQ=34)
                                     ttCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCcg              <  2:3263050/91‑1 (MQ=33)
                                       cGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCcgcg            >  1:1275220/1‑91 (MQ=34)
                                       cGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCcgcg            >  1:136843/1‑91 (MQ=33)
                                       cGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCcgcg            <  1:5408842/91‑1 (MQ=34)
                                        gggAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCgcgc           >  2:3355724/1‑91 (MQ=34)
                                        gggAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCgcgc           >  1:1434532/1‑91 (MQ=34)
                                        gggAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCgcgc           >  1:1198317/1‑91 (MQ=34)
                                        gggAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCgcgc           <  2:591746/91‑1 (MQ=34)
                                        gggAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCgcgc           <  2:4686190/91‑1 (MQ=34)
                                          gAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTg         <  2:749895/91‑1 (MQ=33)
                                          gAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTg         <  1:925396/91‑1 (MQ=34)
                                          gAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTg         <  2:4192829/91‑1 (MQ=33)
                                           aaaCCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGc        >  2:4014273/1‑91 (MQ=34)
                                             aCCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCAt      <  1:687459/91‑1 (MQ=34)
                                             aCCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCAt      >  2:4964880/1‑91 (MQ=34)
                                             aCCGTAGCTAATACCGGATAATATTTTGAACCACATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCAt      >  2:5330515/1‑91 (MQ=18)
                                              ccGTAGCTAATCCCGGATAATATTTTGAACCGCCTGGTTCAAAAGTGAAAGACGCTCTTGCTGTAACTTATAGATGGATCCGCGCTGCAtt     >  2:5154567/1‑91 (MQ=11)
                                              ccGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCAtt     >  1:5096045/1‑91 (MQ=34)
                                              ccGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCAtt     >  1:3208727/1‑91 (MQ=34)
                                              ccGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCAtt     >  1:4487927/1‑91 (MQ=34)
                                              ccGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCAtt     >  1:5212799/1‑91 (MQ=34)
                                              ccGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCAtt     <  2:4935429/91‑1 (MQ=34)
                                              ccGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCAtg     <  2:1885873/91‑2 (MQ=18)
                                               cGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCATTa    <  1:2051356/91‑1 (MQ=33)
                                               cGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACAGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCATTa    >  1:4822329/1‑91 (MQ=18)
                                                gTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCATTAg   <  1:1695792/91‑1 (MQ=32)
                                                gTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCATTAg   >  2:2911727/1‑91 (MQ=32)
                                                gTAGCTAATACCGGATAATATGTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCATTAg   <  2:2095208/91‑1 (MQ=17)
                                                                                          |                                                 
TAACACGTGGATAACCTACCTATAAGACTGGGATAACTTCGGGAAACCGTAGCTAATACCGGATAATATTTTGAACCGCATGGTTCAAAAGTGAAAGACGGTCTTGCTGTCACTTATAGATGGATCCGCGCTGCATTAGC  >  USA300TCH1516_ALE/512901‑513040

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.