| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 511972 | 156 (0.850) | 9 (0.050) | 6/248 | NT | 5.7% | intergenic (+40/‑6723) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | = 512004 | 147 (0.820) | intergenic (+72/‑6691) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
CAAAGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/511830‑511972‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaAAAAAGCCACAATGATTA‑CACTGTGACTTTTCTTACTATAGTATTAAAATCAAAAATGTTTAATAGAAGACATTACATTTCTGTTCTACCTGCGATTGCTTTAGATAATGTTACTTCGTCAGCATACTCTAAATCGCCAC < USA300TCH1516_ALE/512004‑511865 CAAAGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGT > 1:1129154/1‑141 AAAGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTA > 4:589513/1‑141 AAGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAA < 1:1147244/141‑1 AAGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAA < 1:701513/141‑1 AAGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAA > 3:374234/1‑141 AAGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAA < 3:84276/141‑1 TTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGCCACAATGATTA‑CACTG < 2:246203/141‑1 TTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGCCACAATGATTA‑CACTG < 2:890835/141‑1 TATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGCCACAATGATTA‑CACTGT < 2:31884/141‑1 TCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGCCACAATGATTA‑CACTGTGA < 2:289402/141‑1 TCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGCCACAATGATTA‑CACTGTGA < 2:742232/141‑1 TCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGCCACAATGATTA‑CACTGTGA < 2:865227/141‑1 AATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAAT‑CATTGTGGCTTTTTTTACTATAGTATTAAAATCAAAAATGTTTAATAGAAGACATTACATTTCTGTTCTACCTGCGATTGC > 1:419078/1‑141 ATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTACTATAGTATTAAAATCAAAAATGTTTAATAGAAGACATTACATTTCTGTTCTACCTGCGATTGCTTTAGATAATGTTACTTCGTCAGC > 2:1545418/1‑141 TACTATAGTAAGAAAAGTCACAGTGTAAT‑CATTGTGGCTTTTTTTACTATAGTATTAAAATCAAAAATGTTTAATAGAAGACATTACATTTCTGTTCTACCTGCGATTGCTTTAGATAATGTTACTTCGTCAGCATACTCT > 2:573187/1‑141 TAAAAAAAGCCACAATGATTA‑CACTGTGACTTTTCTTACTATAGTATTAAAATCAAAAATGTTTAATAGAAGACATTACATTTCTGTTCTACCTGCGATTGCTTTAGATAATGTTACTTCGTCAGCATACTCTAAATCGCC > 2:616641/1‑141 TAAAAAAAGCCACAATGATTA‑CACTGTGACTTTTCTTACTATAGTATTAAAATCAAAAATGTTTAATAGAAGACATTACATTTCTGTTCTACCTGCGATTGCTTTAGATAATGTTACTTCGTCAGCATACTCTAAATCGCC > 3:392248/1‑141 TAAAAAAAGCCACAATGATTA‑CACTGTGACTTTTCTTACTATAGTATTAAAATCAAAAATGTTTAATAGAAGACATTACATTTCTGTTCTACCTGCGATTGCTTTAGATAAGCTTTCTTCGGCAGCATACTCTAAATCGCC > 3:379088/1‑141 AAAAAAGCCACAATGATTA‑CACTGTGACTTTTCTTACTATAGTATTAAAATCAAAAATGTTTAATAGAAGACATTACATTTCTGTTCTACCTGCGATTGCTTTAGATAATGTTACTTCGTCAGCATACTCTAAATCGCCAC > 3:592383/1‑141 AAAAAAGCCACAATGATTA‑CACTGTGACTTTTCTTACTATAGTATTAAAATCAAAAATGTTTAATAGAAGACATTACATTTCTGTTCTACCTGCGATTGCTTTAGATAATGTTACTTCGTCAGCATACTCTAAATCGCCAC > 1:261335/1‑141 AAAAAAGCCACAATGATTA‑CACTGTGACTTTTCTTACTATAGTATTAAAATCAAAAATGTTTAATAGAAGACATTACATTTCTGTTCTACCTGCGATTGCTTTAGATAATGTTACTTCGTCAGCATACTCTAAATCGCCAC > 4:626258/1‑141 CAAAGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/511830‑511972‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaAAAAAGCCACAATGATTA‑CACTGTGACTTTTCTTACTATAGTATTAAAATCAAAAATGTTTAATAGAAGACATTACATTTCTGTTCTACCTGCGATTGCTTTAGATAATGTTACTTCGTCAGCATACTCTAAATCGCCAC < USA300TCH1516_ALE/512004‑511865 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |