BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 511972	156 (0.850)	9 (0.050)	6/248	NT	5.7%	intergenic (+40/‑6723)	recR/speA_2	Recombination protein RecR/Arginine decarboxylase
*	?	USA300TCH1516_ALE	= 512004	147 (0.820)	9 (0.050)	6/248	NT	5.7%	intergenic (+72/‑6691)	recR/speA_2	Recombination protein RecR/Arginine decarboxylase

Only 100 of 197 total aligned reads displayed.

AAGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAGGAAGCAAGCCGTTGGTTGTG  >  USA300TCH1516_ALE/511832‑512111

aaGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAA                                                                                                                                              <  1:1147244‑M1/141‑1 (MQ=255)

aaGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAA                                                                                                                                              <  3:84276‑M1/141‑1 (MQ=255)

 aGTGGCGAGATTAGCACAAGGGTTATCGGTAGGTGGACGTTTCGCGTATGCTCACGAAGAAACCTTAAGTACAGCCATCGAAGATAGGAAATAAATGTAATAACTTCTAATAAACGTTTGTAATTATCATACTATAGTAAg                                                                                                                                             <  4:311891/141‑1 (MQ=255)

 aGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAg                                                                                                                                             <  3:276426/141‑1 (MQ=255)

 aGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAg                                                                                                                                             <  2:14476/141‑1 (MQ=255)

  gTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGa                                                                                                                                            <  2:488656/141‑1 (MQ=255)

   tGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGaa                                                                                                                                           >  2:521865/1‑141 (MQ=255)

   tGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGaa                                                                                                                                           >  1:350676/1‑141 (MQ=255)

     aCGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGaaaa                                                                                                                                         <  1:111177/141‑1 (MQ=255)

        agaTTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTc                                                                                                                                      >  4:536770/1‑141 (MQ=255)

        agaTTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTc                                                                                                                                      >  2:65685/1‑141 (MQ=255)

          aTTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTcac                                                                                                                                    <  2:1104419/141‑1 (MQ=255)

          aTTAGCACAAGGGTTATCGGTAGGTGGCGATTTACAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTcac                                                                                                                                    <  1:1534397/141‑1 (MQ=255)

             aGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAgt                                                                                                                                 <  2:597548/141‑1 (MQ=255)

             aGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAgt                                                                                                                                 <  1:1648068/141‑1 (MQ=255)

              gCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAgtg                                                                                                                                <  3:662579/141‑1 (MQ=255)

                acaAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑Ta                                                                                                                             >  3:488105/1‑141 (MQ=255)

                 caAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCATGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑Taa                                                                                                                            <  2:900954/141‑1 (MQ=255)

                    gggTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCa                                                                                                                         <  1:1376893/141‑1 (MQ=255)

                       ttATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAgaaaagccacaatgattacactg                                                                                                                       <  2:246203‑M1/141‑24 (MQ=255)

                       ttATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATtg                                                                                                                      >  1:1231504/1‑141 (MQ=255)

                        tATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAgaaaagccacaatgattacactgt                                                                                                                      <  2:31884‑M1/141‑25 (MQ=255)

                        tATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATtgt                                                                                                                     <  1:403862/141‑1 (MQ=255)

                         aTCGGTCGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATtgtg                                                                                                                    >  4:598177/1‑141 (MQ=255)

                         aTCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATtgtg                                                                                                                    >  3:216999/1‑141 (MQ=255)

                         aTCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATAAAAAAATAAAAAAAGTCACAGTG‑TAATCATtgtg                                                                                                                    <  4:612601/141‑1 (MQ=255)

                          tCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAgaaaagccacaatgattacactgtga                                                                                                                    <  2:742232‑M1/141‑27 (MQ=255)

                          tCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAgaaaagccacaatgattacactgtga                                                                                                                    <  2:289402‑M1/141‑27 (MQ=255)

                           cGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGc                                                                                                                  <  1:433443/141‑1 (MQ=255)

                            ggTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCt                                                                                                                 <  1:524982/141‑1 (MQ=255)

                            ggTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCt                                                                                                                 <  3:510257/141‑1 (MQ=255)

                             gTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCtt                                                                                                                <  2:1483616/141‑1 (MQ=255)

                                ggTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCttttt                                                                                                             >  2:525612/1‑141 (MQ=255)

                                 gTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTt                                                                                                            >  4:626258‑M2/1‑140 (MQ=255)

                                   ggCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTtta                                                                                                          >  2:616641‑M2/1‑138 (MQ=255)

                                      gATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTAtgg                                                                                                       >  4:586682/1‑141 (MQ=255)

                                          tAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTAtggtgtg                                                                                                   <  4:341214/141‑1 (MQ=255)

                                           agagTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTAtggtgtgg                                                                                                  <  2:1138017/141‑1 (MQ=255)

                                           agagTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTAtggtgtgg                                                                                                  >  2:634221/1‑141 (MQ=255)

                                            gagTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TGATCATTGTGGCTTTTTTTAtggtgtggt                                                                                                 <  2:827391/141‑1 (MQ=255)

                                            gagTATGCTGACGAAGTAACATTATCTAAAGCAACCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTAtggtgtggt                                                                                                 >  1:1255354/1‑141 (MQ=255)

                                            aagTATGCTGACGTAGTAACATTATCTAAAGCAATCGCAGGTAGAACAAAAATGTAATGTCTTCTATTACACATTTTTGATTTTAATACTATAGAAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTAtggtgtggt                                                                                                 <  2:861974/140‑1 (MQ=255)

                                              gTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATggtgtggtgt                                                                                               >  2:607357/1‑141 (MQ=255)

                                                 tGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGAt                                                                                            >  1:516212/1‑141 (MQ=255)

                                                  gCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAAAAAAGCCACAATGATTA‑CACTGTGACTTTTCttactatagtattaaaat                                                                                           >  2:1545418‑M2/1‑123 (MQ=255)

                                                      aCGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGtact                                                                                       >  3:537747/1‑141 (MQ=255)

                                                      aCGAAGTAACATAATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTATTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTTTGGTGTGGAGTGATGtact                                                                                       >  4:451011/1‑141 (MQ=255)

                                                          aGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGGACTACtt                                                                                   >  2:89980/1‑141 (MQ=255)

                                                                  tATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCg                                                                           <  2:888663/141‑1 (MQ=255)

                                                                   aTCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCgg                                                                          <  2:1500945/141‑1 (MQ=255)

                                                                   aTCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCgg                                                                          <  1:159391/141‑1 (MQ=255)

                                                                   aTCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCgg                                                                          <  1:943832/141‑1 (MQ=255)

                                                                    tCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATTCTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGgt                                                                         <  1:619498/141‑1 (MQ=255)

                                                                    tCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGgt                                                                         <  2:537176/141‑1 (MQ=255)

                                                                       aaaGCAATCGCCGGTAGAACGTTAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGtgtg                                                                      <  2:1157232/141‑1 (MQ=255)

                                                                          gCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCg                                                                   >  4:132325/1‑141 (MQ=255)

                                                                          gCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCg                                                                   <  1:277373/141‑1 (MQ=255)

                                                                          gCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAAAAAAGCCACAATG‑ATTACACTGTGACTTTTCttactatagtattaaaatcaaaaatgtttaatagaagacatt                                                                   >  1:419078‑M2/1‑99 (MQ=255)

                                                                          gCAAGCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCg                                                                   <  1:766318/141‑1 (MQ=255)

                                                                            aaTCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCggt                                                                 <  4:358865/141‑1 (MQ=255)

                                                                            aaTCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCggt                                                                 <  1:221388/141‑1 (MQ=255)

                                                                             aTCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCggtg                                                                <  1:878113/141‑1 (MQ=255)

                                                                             aTCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCggtg                                                                <  1:700365/141‑1 (MQ=255)

                                                                              tCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCggtgg                                                               >  3:97089/1‑141 (MQ=255)

                                                                              tCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCggtgg                                                               >  1:1218240/1‑141 (MQ=255)

                                                                               cGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCggtggt                                                              >  2:178023/1‑141 (MQ=255)

                                                                               cGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACCACTTTATTTGCGGTGTGGCggtggt                                                              >  4:88299/1‑141 (MQ=255)

                                                                                gCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTa                                                             <  2:1335741/141‑1 (MQ=255)

                                                                                   ggTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATgg                                                          >  2:876847/1‑141 (MQ=255)

                                                                                   ggTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATgg                                                          <  3:115937/141‑1 (MQ=255)

                                                                                     tAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGtt                                                        >  1:133458/1‑141 (MQ=255)

                                                                                     tAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGtt                                                        <  3:34968/141‑1 (MQ=255)

                                                                                      aGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGttt                                                       >  1:730721/1‑141 (MQ=255)

                                                                                          cAGAAATGTAATGTCTTCTATTAAACATTTTTTTTTTTATTACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTTTGGTTTActt                                                   >  4:415828/1‑139 (MQ=255)

                                                                                          cAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCt                                                   <  4:388534/141‑1 (MQ=255)

                                                                                           aGAAATGTAATGTCTTCTATTAAACATTTTTTTTTTTTTTACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTa                                                  >  4:526895/1‑141 (MQ=255)

                                                                                            gagatgtaatgtCTTCTATTAAACATTTTTGATTGTAATACTATGGTAAGAGAAGTCACAGTG‑TAGTCAGTGTGGCTTGTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAg                                                 <  2:1655833/138‑1 (MQ=255)

                                                                                                tgtaatgtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGtttt                                             <  1:81838/141‑1 (MQ=255)

                                                                                                 gtaatgtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTa                                            >  1:1496442/1‑141 (MQ=255)

                                                                                                   aatgtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACt                                          <  1:642889/141‑1 (MQ=255)

                                                                                                      gtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAg                                       <  1:791366/141‑1 (MQ=255)

                                                                                                        cttctATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAggg                                     >  2:1104871/1‑141 (MQ=255)

                                                                                                         ttctATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGa                                    <  2:1079726/141‑1 (MQ=255)

                                                                                                             aTTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATggg                                <  3:414543/141‑1 (MQ=255)

                                                                                                              ttAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGCGGGCTGGGt                               <  2:738285/141‑1 (MQ=255)

                                                                                                              ttAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGt                               <  2:15414/141‑1 (MQ=255)

                                                                                                              ttAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGt                               <  3:72557/141‑1 (MQ=255)

                                                                                                                  aCATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATc                           <  3:612193/141‑1 (MQ=255)

                                                                                                                     tttttGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCttt                        <  4:248315/141‑1 (MQ=255)

                                                                                                                       tttGATTTTAATACTATAGTAAGAAAGGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAg                      <  2:1307924/141‑1 (MQ=255)

                                                                                                                            ttttAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGC‑TTTTTTATGGGGTGGTGTGGTGTAATACTTTTTTTGCGGTGTGGCGGGGGGTTGGTTTTCCTGGTTTTGCTGGGGGGTTGGTAATCTTTAGGaaaca                >  3:629000/1‑141 (MQ=255)

                                                                                                                                 aTACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAGGAAGCAAGcc            >  1:716509/1‑141 (MQ=255)

                                                                                                                                  tACTATAGTAAgaaaagtcacagtgtaatcattgtggctttttttactatagtattaaaatcaaaaatgtttaatagaagacattacatttctgttctacctgcgattgctttagataatgttacttcgtcagcatactct            >  2:573187‑M1/1‑11 (MQ=255)

                                                                                                                                   aCTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAGGAAGCAAGCCgt          <  1:1162808/141‑1 (MQ=255)

                                                                                                                                      ataGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAGGAAGCAAGCCgttgg       >  3:129608/1‑141 (MQ=255)

                                                                                                                                      ataGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAGGAAGCAAGCCgttgg       >  1:188661/1‑141 (MQ=255)

                                                                                                                                          tAAaaaaagccacaatgattacactgtgacttttcttactatagtattaaaatcaaaaatgtttaatagaagacattacatttctgttctacctgcgattgctttagataatgttacttcgtcagcatactctaaatcgcc    >  3:392248‑M1/1‑3 (MQ=255)

                                                                                                                                          tAAaaaaagccacaatgattacactgtgacttttcttactatagtattaaaatcaaaaatgtttaatagaagacattacatttctgttctacctgcgattgctttagataagctttcttcggcagcatactctaaatcgcc    >  3:379088‑M1/1‑3 (MQ=255)

                                                                                                                                            aaaaaagccacaatgattacactgtgacttttcttactatagtattaaaatcaaaaatgtttaatagaagacattacatttctgttctacctgcgattgctttagataatgttacttcgtcagcatactctaaatcgccac  >  3:592383‑M1/1‑1 (MQ=255)

                                                                                                                                            aaaaaagccacaatgattacactgtgacttttcttactatagtattaaaatcaaaaatgtttaatagaagacattacatttctgttctacctgcgattgctttagataatgttacttcgtcagcatactctaaatcgccac  >  1:261335‑M1/1‑1 (MQ=255)

AAGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTG‑TAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAGGAAGCAAGCCGTTGGTTGTG  >  USA300TCH1516_ALE/511832‑512111

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.