| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1732959 = | 174 (0.950) | 10 (0.060) | 6/230 | NT | 6.7% | intergenic (+145/+92) | limB_2/USA300HOU_RS08645 | Limonene 1,2‑monooxygenase/hypothetical protein |
| ? | USA300TCH1516_ALE | 1733016 = | 123 (0.740) | intergenic (+202/+35) | limB_2/USA300HOU_RS08645 | Limonene 1,2‑monooxygenase/hypothetical protein | |||||
AATGAATATACAGGATCGAATAACGAAGAGAAAAAAGAAAATGAAGATAAAGAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1733110‑1732959‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTACATTTTTAACTTGTTCATTATCGCTATTTTT > USA300TCH1516_ALE/1733016‑1733155 aaaGAATATACAGGAACGAATAACGAAGAGAAAAAAGAAAATGAAGATAAAGAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAG < 2:825992/138‑1AATGAATATACAGGATCGAATAACGAAGAGAAAAAAGAAAATGAAGATAAAGAAAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAG > 1:1252674/1‑141 ATGAATATACAGGATCGAATAACGAAGAGAAAAAAGAAAATGAAGATAAAGAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCACATAAAGACTTACAAAGAGTCAAGATGAAGG > 3:223927/1‑141 TGAATATACAGGATCGAATAACGAAGAGAAAAAAGAAAATGAAGATAAAGAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGG > 4:688406/1‑141 ATATACAGGATCGAATAACGAAGAGAAAAAAGAAAATGAAGATAAAGAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCG > 1:1307739/1‑141 ATATACAGGATCGAATAACGAAGAGAAAAAAGAAAATGAAGATAAAGAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCG > 1:135193/1‑141 ATATACAGGATCGAATAACGAAGAGAAAAAAGAAAATGAAGATAAAGAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCG > 1:1289095/1‑141 ATATACAGGATCGAATAACGAAGAGAAAAAAGAAAATGAAGATAAAGAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCG > 2:1268163/1‑141 TATACAGGATCGAATAACGAAGAGAAAAAAGAAAATGAAGATAAAGAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGC < 1:1409848/141‑1 TATACAGGATCGAATAACGAAGAGAAAAAAGAAAATGAAGATAAAGAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGC < 1:1072335/141‑1 TATACAGGATCGAATAACGAAGAGAAAAAAGAAAATGAAGATAAAGAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGC > 3:450736/1‑141 ATACAGGATCGAATAACGAAGAGAAAAAAGAAAATGAAGATAAAGAGAAATAAATTTCTTTAAATTTTGGATATGCTCTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCg < 1:1572796/141‑2 aACAGGATCGAATAACGAAGAGAAAAAAGAAAATGAAGATAAAGAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTT < 1:359185/140‑1 TACAGGATCGAATAACGAAGAGAAAAAAGAAAATGAAGATAAAGAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTT < 4:51109/141‑1 TACAGGATCGAATAACGAAGAGAAAAAAGAAAATGAAGATAAAGAGAAATAAATTTCTTTAAATTTTGGATATGCCTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTT < 1:1403412/141‑1 ACAGGATCGAATAACTAAGAGAAAAAAGAAAATGAAGATAAAGAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTT < 2:1150324/141‑1 ACAGGATCGAATAACGAAGAGAAAAAAGAAAATGAAGATAAAGAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTT > 4:348525/1‑141 ACAGGATCGAATAACGAAGAGAAAAAAGAAAATGAAGATAAAGAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTT > 3:429688/1‑141 ACAGGATCGAATAACGAAGAGAAAAAAGAAAATGAAGATAAAGAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTT < 2:658568/141‑1 CAGGATCGAATAACGAAGAGAAAAAAGAAAATGAAGATAAAGAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTC < 2:45869/141‑1 CAGGATCGAATAACGAAGAGAAAAAAGAAAATGAAGATAAAGAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTC < 1:164368/141‑1 CAGGATCGAATAACGAAGAGAAAAAAGAAAATGAAGATAAAGAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTC > 1:1613633/1‑141 AATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATT > 1:405092/1‑141 ATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTagc > 2:956119/1‑138 CGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATAT > 1:491624/1‑141 CCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGGTCCTGTATATTCAT > 2:1166788/1‑141 CCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCAT > 1:578814/1‑141 CATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCTTGTCTATTCATT > 2:286722/1‑141 CATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATT > 1:132331/1‑141 AATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGTTACTGTATATTCTTTTATCT > 2:1387521/1‑141 AATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCT > 3:421343/1‑141 AATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCT > 1:688440/1‑141 GGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTACATTTTTAACTTGTTCATTAT > 2:1162859/1‑141 GCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTACATTTTTAACTTGTTCATTATCG < 2:172045/141‑1 GCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTACATTTTTAACTTGTTCATTATCG < 4:277678/141‑1 GCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTACATTTTTAACTTGTTCATTATCG > 1:246828/1‑141 GCTTTCAAAATATTGAACAGCATATCCAAATTTTACAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTACATTTTTAACTTGTTCATTATCGCT < 1:1242095/141‑1 GCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTACATTTTTAACTTGTTCATTATCGCT < 2:148442/141‑1 GCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTACATTTTTAACTTGTTCATTATCGCT < 1:760422/141‑1 GCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTACATTTTTAACTTGTTCATTATCGCT < 1:510303/141‑1 TTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTACATTTTTAACTTGTTCATTATCGCTATT > 2:1520277/1‑141 TCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTACATTTTTAACTTGTTCATTATCGCTATTT > 2:540082/1‑141 TCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTACATTTTTAACTTGTTCATTATCGCTATTT < 1:933894/141‑1 aAAAATGTTGAAAAGCATATCCAAAATTTAAAGAAATTTATTACTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTACATTTTTAACTTGTTCATTATCGCTATTTT < 2:1584058/140‑1 AAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTACATTTTTAACTTGTTCATTATCGCTATTTTT > 2:1198615/1‑141 AAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTACATTTTTAACTTGTTCATTATCGCTATTTTT > 2:1198573/1‑141 AAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTACATTTTTAACTTGTTCATTATCGCTATTTTT < 1:1600845/141‑1 AATGAATATACAGGATCGAATAACGAAGAGAAAAAAGAAAATGAAGATAAAGAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1733110‑1732959‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTACATTTTTAACTTGTTCATTATCGCTATTTTT > USA300TCH1516_ALE/1733016‑1733155 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |