| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2830190 = | 176 (0.960) | 3 (0.020) | 3/232 | NT | 1.9% | intergenic (+18/+429) | icaC/lipA_2 | putative poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein/Lipase 1 |
| ? | USA300TCH1516_ALE | 2830247 = | 147 (0.880) | intergenic (+75/+372) | icaC/lipA_2 | putative poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein/Lipase 1 | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATTGGCATTTACGAAGTTTAAATGTGCAATTAGAATATATGTATAACAATATTAAACACGCGGTAAAACGAAGTCAGTCAATTCAAACTGATTTCGCCCACCGCGTGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2830336‑2830190‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgcgtgtttAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTGACTTTCCGCCA > USA300TCH1516_ALE/2830247‑2830386 ATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATTGGCATTTACGAAGTTTAAATGTGCAATTAGAATATATGTATAACAATATTAAACCCGCGGAAAAACGAAGTCAGTCAATTCAAACTGATTTCGCCCACCGC < 3:696018/141‑1ATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATTGGCATTTACGAAGTTTAAATGTGCAATTAGAATATATGTATAACAATATTAAACACGCGGTAAAACGAAGTCAGTCAATTCAAACTGATTTCGCCCACCGC > 2:565941/1‑141ATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATTGGCATTTACGAAGTTTAAATGTGCAATTAGAATATATGTATAACAATATTAAACACGCGGTAAAACGAAGTCAGTCAATTCAAACTGATTTCGCCCACCGC > 1:1591562/1‑141 TAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATTGGCATTTACGAAGTTTAAGTGTGCAATTAGAATATATGTATAACAATATTAAACACGCGGTAAAACGAAGTCAGTCAATTCAAACTGATTTCGCCCACCGCG < 3:689745/141‑1 TAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATTGGCATTTACGAAGTTTAAATGTGCAATTAGAATATATGTATAACAATATTAAACACGCGGTAAAACGAAGTCAGTCAATTCAAACTGATTTCGCCTACCGCG > 1:271405/1‑141 TAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATTGGCATTTACGAAGTTTAAATGTGCAATTAGAATATATGTATAACAATATTAAACACGCGGTAAAACGAAGTCAGTCAATTCAAACTGATTTCGCCCACCGCG < 2:1263840/141‑1 TAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATTGGCATTTACGAAGTTTAAATGTGCAATTAGAATATATGTATAACAATATTAAACACGCGGTAAAACGAAGTCAGTCAATTCAAACTGATTTCGCCCACCGCG < 2:1564091/141‑1 TAAATTTTGCGAAAAGATCATTTCTGTTCCACTCCCATTGGCATTTACGAAGTTTAAATGTGCAATTAGAATATATGTATAACAATATTAAACACGCGGTAAAACGAAGTCAGTCAATTCAAACTGATTTCGCCCACCGCG < 2:936287/141‑1 AATTTTGCGAAAATATCATTTCTGTCCCACTCCCATTGGCATTTACGAAGTTTAAATGTGCAATTAGAATATATGTATAACAATATTAAACACGCGGTAAAACGAAGTCAGTCAATTCAAACTGATTTCGCCCACCGCGTG > 1:715287/1‑141 AATTTTGCGAAAATATCATTTCTGTCCCACTCCCATTGGCATTTACGAAGTTTAAATGTGCAATTAGAATATATGTATAACAATATTAAACACGCGGTAAAACGAAGTCAGTCAATTCAAACTGATTTCGCCCACCGCGTG > 3:633424/1‑141 AATTTTGCGAAAATATCATTTCTGTCCCACTCCCATTGGCATTTACGAAGTTTAAATGTGCAATTAGAATATATGTATAACAATATTAAACACGCGGTAAAACGAAGTCAGTCAATTCAAACTGATTTCGCCCACCGCGTG > 2:986541/1‑141 ATTTTGCGAAAATATCATTTCTTTCCCACTCCTATTGGCATTTACGAAGTTTCAATGTGCAATTAGAATATATGTATAACAATATTAAACACGCGGTAAAACGAAGTCAGTCAATTCAAACTGATTTCGCCCACCGCGTGT < 1:791995/141‑1 TTTTGCGAAAATATCATTTCTGTCCCACTCCCATTGGCATTTACGAAGTTTAAATGTGCAATTAGAATATATGTATAACAATATTAAACACGCGGTAAAACGAAGTCAGTCAATTCAAACTGATTTCGCCCACCGCGTGTT < 4:114150/141‑1 TTTTGCGAAAATATCATTTCTGTCCCACTCCCATTGGCATTTACGAAGTTTAAATGTGCAATTAGAATATATGTATAACAATATTAAACACGCGGTAAAACGAAGTCAGTCAATTCAAACTGATTTCGCCCACCGCGTGTT > 1:181792/1‑141 TTTTGCGAAAATATCATTTCTGTCCCACTCCCATTGGCATTTACGAAGTTTAAATGTGCAATTAGAATATATGTATAACAATATTAAACACGCGGTAAAACGAAGTCAGTCAATTCAAACTGATTTCACCCACCGCGTGTT < 4:307553/141‑1 TTTGCGAAAATATCATTTCTGTCCCACTCCCATTGGCATTTACGAAGTTTAAATGTGCAATTAGAATATATGTATAACAATATTAAACACGCGGTAAAACGGAGTCAGTCAATTCAAACTGATTTCGCCCACCGCGTGTTT < 2:1345779/141‑1 TTTGCGAAAATATCATTTCTGTCCCACTCCCATTGGCATTTACGAAGTTTAAATGTGCAATTAGAATATATGTATAACAATATTAAACACGCGGTAAAACGAAGTCAGTCAATTCAAACTGATTTCGCCCACCGCGTGTTT > 3:368986/1‑141 TTTGCGAAAATATCATTTCTGTCCCACTCCCATTGGCATTTACGAAGTTTAAATGTGCAATTAGAATATATGTATAACAATATTAAACACGCGGTAAAACGAAGTCAGTCAATTCAAACTGATTTCGCCCACCGCGTGTTT > 2:53427/1‑141 TTTGCGAAAATATCATTTCTGTCCCACTCCCATTGGCATTTACGAAGTTTAAATGTGCAATTAGAATATATGTATAACAATATTAAACACGCGGGAAAACGAAGTCAGTCAATTCAAACTGATTTCGCCCACAGCGTGTTT > 3:107282/1‑141 CGCGGTAAAACGAAGTCAGTCAATTCAAACTGATTTCGCCCACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA > 2:116680/1‑141 AAAACGAAGTCAGTCAATTCAAACTGATTTCGCCCACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGT > 4:137778/1‑141 AAACGAAGTCAGTCAATTCAAACTGATTTCGCCCACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTC > 3:143353/1‑141 AACGAAGTCAGTCAATTCAAACTGATTTCGCCCACCGCGTGTTT < 3:58809/44‑1 AACGAAGTCAGTCAATTCAAACTGATTTCGCCCACCGCGTGTTT > 4:58809/1‑44 CCGCGTGTTTAATATTNTTATACATATATNCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTGAC > 1:923008/1‑141 CCGCGTGTTTAATATTGTTATACATTTATTCTAATTGCACATTTAAACTTCGTAATTGCCAATGTGAGTTGGTCAGAAATGAGATCTTCGCAAAATTTATTTCGTCTCCCCACCCCAACTTGCACATTATTGTAACCTGAC > 1:1074458/1‑141 CCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTGAC > 4:603157/1‑141 CCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTGAC > 1:1286564/1‑141 CCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTGAC > 2:1098339/1‑141 CCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTGAC > 2:1095242/1‑141 CCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTGAC > 1:982984/1‑141 CCGCGTGTTTAATATTGTTATACATATATTCTAATCGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTCCCACATTATTGTAACCTGAC > 1:982972/1‑141 CGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGATATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTGACT < 2:995218/141‑1 CGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTGACT > 4:684211/1‑141 GCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTGACTT < 3:451372/141‑1 GCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTGACTT < 1:1460726/141‑1 CGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTGACTTT < 2:1251599/141‑1 GTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTTGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTGACTTTC > 1:17634/1‑141 GTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTGACTTTC < 1:142911/141‑1 TGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTGACTTTCC > 3:561205/1‑141 GTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTGACTTTCCG < 1:532319/141‑1 TTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA > 3:213714/1‑91 TTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA < 4:213714/91‑1 TAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTGACTTTCCGCCA < 2:207419/141‑1 ATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATTGGCATTTACGAAGTTTAAATGTGCAATTAGAATATATGTATAACAATATTAAACACGCGGTAAAACGAAGTCAGTCAATTCAAACTGATTTCGCCCACCGCGTGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2830336‑2830190‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgcgtgtttAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTGACTTTCCGCCA > USA300TCH1516_ALE/2830247‑2830386 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |