BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1265511	122 (0.670)	9 (0.060)	9/224	NT	7.3%	intergenic (+19/‑154)	femA_1/dprA	Aminoacyltransferase FemA/DNA processing protein DprA
*	?	USA300TCH1516_ALE	= 1265527	120 (0.740)	9 (0.060)	9/224	NT	7.3%	intergenic (+35/‑138)	femA_1/dprA	Aminoacyltransferase FemA/DNA processing protein DprA

Only 100 of 200 total aligned reads displayed.

ATTTTGGTGTTCAACAATTTAAAAAGGGTTTTAATGCACATGTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAACAAAAATAGAATATGATTTTGTATGATTACAAAA  >  USA300TCH1516_ALE/1265371‑1265651

 ttttGGTGTTCAACAATTTAAAAAGGGTTTTAATGCACATGTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGgaaat                                                                                                                                             <  2:794468/141‑1 (MQ=255)

  tttGGTGTTCAACAATTTAAAAAGGGTTTTAATGCACATGTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACTAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGgaaatt                                                                                                                                            <  4:459751/141‑1 (MQ=255)

   ttGGTGTTCAACAATTTAAAAAGGGTTTTAATGCACATGTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGgaaattg                                                                                                                                           >  3:558874/1‑141 (MQ=255)

    tGGTGTTCAACAATTTAAAAAGGGTTTTAATGCACATGTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGgaaattga                                                                                                                                          <  1:1263249/141‑1 (MQ=255)

        gtTCAACAATTTAAAAAGGGTTTTAATGCACATGTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAGAACTTATTTATAAGGTTTAATTATAAAGTATGTTGgaaattgaaatt                                                                                                                                      <  3:184120/141‑1 (MQ=255)

          tCAACAATTTAAAAAGGGTTTTAATGCACATGTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAAtttt                                                                                                                                    <  2:299457/141‑1 (MQ=255)

           caacaaTTTAAAAAGGGTTTTAATGCACATGTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTa                                                                                                                                   <  2:4215/141‑1 (MQ=255)

           caacaaTTTAAAAAGGGTTTTAATGCACATGTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTa                                                                                                                                   <  3:450657/141‑1 (MQ=255)

              aaaTTTAAAAATGGCTTTAATGCACATGATGAAGAATTAATTGGTGATTTCATCAAACAAGTAAGACCAATTCTATATAAATTTGCAAAGCTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAAt                                                                                                                                <  4:458393/140‑1 (MQ=255)

                aTTTAAAAAGGGTTTTAAGGCACATGTTGAAGAATTAATTGGTGGTTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGACAgaatttaaactttcaa                                                                                                                              <  4:578257‑M1/141‑17 (MQ=255)

                  ttAAAAAGGGTTTTAATGCACATGTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAAgaatttaaaatttcaatt                                                                                                                            <  1:1131469‑M1/141‑19 (MQ=255)

                    aaaaaGGGTTTTAATGCACATGTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttc                                                                                                                          <  4:378026‑M2/141‑5 (MQ=255)

                    aaaaaGGGTTTTAATGCACATGTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttc                                                                                                                          <  2:980401‑M2/141‑5 (MQ=255)

                     aaaaGGGTTTTAATGCACATGTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttcc                                                                                                                         <  2:1293063‑M2/141‑6 (MQ=255)

                     aaaaGGGTTTTAATGCACATGTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttcc                                                                                                                         <  2:1138719‑M2/141‑6 (MQ=255)

                     aaaaGGGTTTTAATGCACATGTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttcc                                                                                                                         <  1:62936‑M2/141‑6 (MQ=255)

                      aaaGGGTTTTAATGCACATGTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttcca                                                                                                                        <  1:330632‑M2/141‑7 (MQ=255)

                      aaaGGGTTTTAATGCACATGTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttcca                                                                                                                        <  3:184897‑M2/141‑7 (MQ=255)

                       aaGGGTTTTAATGCACATGTTGAAGAATTTATTGGTGATTTCAGTAAACAAGTAAGACGAATTCTATATAAAGTTGCAAAACTTATTTATAAAGTTTAATTATAAAGTATGTTGGAAAgaatttaaaatttcaatttccaa                                                                                                                       <  4:408844‑M1/141‑24 (MQ=255)

                       aaGGGTTTTAATGCACATGTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaa                                                                                                                       >  2:1130602‑M2/1‑134 (MQ=255)

                       aaGGGTTTTAATGCACATGTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaa                                                                                                                       >  3:213349‑M2/1‑134 (MQ=255)

                        aGGGTTTTAATGCACATGTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTATATTAtttccaac                                                                                                                      <  4:359412‑M2/141‑9 (MQ=255)

                             tttAATGCACATGTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaacatact                                                                                                                 >  4:289584‑M2/1‑128 (MQ=255)

                              ttAATGCACATGTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaacatactt                                                                                                                >  2:541901‑M2/1‑127 (MQ=255)

                              ttAATGCACATGTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaacatactt                                                                                                                >  3:580927‑M2/1‑127 (MQ=255)

                                     atatgTTGAAGAATTACTTGGTGGTTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAATGTTTAATTATACAGTATGTTGGAAAgaatttaaaatttcaatttccaacatactttataatt                                                                                                         <  2:1037594‑M1/139‑38 (MQ=255)

                                     acaTGTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACtt                                                                                                         <  4:125330/141‑1 (MQ=255)

                                      caTGTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACttt                                                                                                        >  1:808842/1‑141 (MQ=255)

                                       aTGTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACtttt                                                                                                       <  3:129547/141‑1 (MQ=255)

                                            gaagaaTTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGt                                                                                                  >  1:439642/1‑141 (MQ=255)

                                            gaagaaTTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGt                                                                                                  <  1:310482/141‑1 (MQ=255)

                                               gaaTTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAg                                                                                               <  1:2444/141‑1 (MQ=255)

                                                 attaattGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTa                                                                                             <  3:435687/141‑1 (MQ=255)

                                                  ttaattGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTAt                                                                                            >  1:222523/1‑141 (MQ=255)

                                                   taattGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTAtt                                                                                           <  2:1327317/141‑1 (MQ=255)

                                                   taattGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTAtt                                                                                           >  3:330187/1‑141 (MQ=255)

                                                     attGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTAtttt                                                                                         <  1:1417213/141‑1 (MQ=255)

                                                     attGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTAtttt                                                                                         <  1:335838/141‑1 (MQ=255)

                                                      ttGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTAttttt                                                                                        >  4:212387/1‑141 (MQ=255)

                                                        ggTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAAgaatttaaaatttcaatttccaac                                                                                                                      >  2:1142873‑M1/1‑85 (MQ=255)

                                                        ggTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAAgaatttaaaatttcaatttccaac                                                                                                                      <  1:1142873‑M1/109‑25 (MQ=255)

                                                        ggTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTAc                                                                                      <  1:301230/141‑1 (MQ=255)

                                                           gATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTcc                                                                                   >  1:1010573/1‑141 (MQ=255)

                                                             tttCTTCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGATGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCtt                                                                                 >  4:328214/1‑141 (MQ=255)

                                                             tttCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCtt                                                                                 <  1:860037/141‑1 (MQ=255)

                                                             tttCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCtt                                                                                 <  2:1189119/141‑1 (MQ=255)

                                                               tcatcaAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTaa                                                                               >  2:485514/1‑141 (MQ=255)

                                                                   caAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATa                                                                           >  3:450157/1‑141 (MQ=255)

                                                                   caAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATa                                                                           >  1:664330/1‑141 (MQ=255)

                                                                   caAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATa                                                                           <  4:185652/141‑1 (MQ=255)

                                                                    aaaCCAGTAGGTGCAATTCGATATATGTTTTCAAATCCGAGTTGTAAGGTTTAATTAGAAAGGATTGTTGAGATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATaa                                                                          <  1:1164572/141‑1 (MQ=255)

                                                                    aaaCCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATaa                                                                          >  1:1136529/1‑141 (MQ=255)

                                                                             aGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTTTTTTAGTTTTTTTACTCCTTAAAATAACATTACAtt                                                                 >  4:298640/1‑140 (MQ=255)

                                                                             aGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATc                                                                 >  2:1389193/1‑141 (MQ=255)

                                                                                ccAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGAc                                                              <  2:1403927/141‑1 (MQ=255)

                                                                                 cAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACa                                                             >  1:1147990/1‑141 (MQ=255)

                                                                                  aaTTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACaa                                                            <  1:467894/141‑1 (MQ=255)

                                                                                   aTTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTATTAAGTCAGTATTTTTACTCCTTAAAATAACATAACATCGACAAt                                                           >  2:750081/1‑141 (MQ=255)

                                                                                    ttCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATg                                                          >  2:1093519/1‑141 (MQ=255)

                                                                                          ataAATTTGCAAAACTTATCTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAATTCAGTATTTTTACTCCTTAAAATAACATTACATCGATAATGTTTTTg                                                    >  2:1282431/1‑141 (MQ=255)

                                                                                             aaTTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAGTAACATTACATCGACAAGGTTTTTGTAt                                                 >  1:1307294/1‑141 (MQ=255)

                                                                                                ttGCAAAACTTATTTATAAGATTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAg                                              <  3:359412/141‑1 (MQ=255)

                                                                                                 tGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGa                                             <  2:1574372/141‑1 (MQ=255)

                                                                                                  gCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGaa                                            >  1:262171/1‑141 (MQ=255)

                                                                                                       aCTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAGTGTTTTTGTATTAGAAATGTa                                       <  2:971133/141‑1 (MQ=255)

                                                                                                         ttatttatAAGGCTAAATTATAAATTATGTTGAAAATTTAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTaaa                                     <  2:1156881/141‑1 (MQ=255)

                                                                                                          tatttatAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTaaaa                                    <  1:1507871/141‑1 (MQ=255)

                                                                                                            tttatAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAACa                                  <  2:1157570/141‑1 (MQ=255)

                                                                                                             ttatAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAACaa                                 >  1:478320/1‑141 (MQ=255)

                                                                                                             ttatAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAACaa                                 >  1:596255/1‑141 (MQ=255)

                                                                                                              tataAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAACaaa                                >  2:382790/1‑141 (MQ=255)

                                                                                                                  aGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTGTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAACAAAAATa                            >  1:328376/1‑141 (MQ=255)

                                                                                                                    gTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAACAAAAATAGa                          >  1:1468617/1‑141 (MQ=255)

                                                                                                                          ttATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAACAAAAATAGAATATGa                    >  2:942868/1‑141 (MQ=255)

                                                                                                                          ttATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAACAAAAATAGAATATGa                    <  1:528255/141‑1 (MQ=255)

                                                                                                                            ataAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaacatactttataattaaaccttataaataagttttgcaaatttatatagaattggtcttactggtttgatgaaatcaccaattaattcttcaacatgtgcat                  <  1:1326710‑M2/141‑109 (MQ=255)

                                                                                                                            ataAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAACAAAAATAGAATATGAtt                  >  4:245489/1‑141 (MQ=255)

                                                                                                                             taAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaacatactttataattaaaccttataaataagttttgcaaatttatatagaattggtcttactggtttgatgaaatcaccaattaattcttcaacatgtgcatt                 <  3:479860‑M2/141‑110 (MQ=255)

                                                                                                                             taAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAACAAAAATAGAATATGAttt                 <  1:106207/141‑1 (MQ=255)

                                                                                                                              aaaGTATGTTGGAAAgaatttaaaatttcaatttccaacatactttataattaaaccttataaataagttttgcaaatttatatagaattggtcttactggtttgatgaaatcaccaattaattcttcaacatgtgcatta                >  4:565712‑M1/1‑15 (MQ=255)

                                                                                                                              aaaGTATGTTGGAAAgaatttaaaatttcaatttccaacatactttataattaaaccttataaataagttttgcaaatttatatagaattggtcttactggtttgatgaaatcaccaattaattcttcaacatgtgcatta                >  2:1083168‑M1/1‑15 (MQ=255)

                                                                                                                              aaaGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAACAAAAATAGAATATGAtttt                >  3:610041/1‑141 (MQ=255)

                                                                                                                              aaaGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAACAAAAATAGAATATGAtttt                >  2:619320/1‑141 (MQ=255)

                                                                                                                              aaaGTATGATGGAAAgaatttaaaatttcaatttccaacataatttataattaaacattataaataagttttacaaatttatatagaattggtattactggtttaatgaaatcaccaaataattcttagaaatgttcatta                >  4:572785‑M1/1‑15 (MQ=255)

                                                                                                                               aaGTATGTTAAAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTATAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAAAAAAAAAAAAAAATAGAATATGATTTTg               <  4:104745/141‑1 (MQ=255)

                                                                                                                                aGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAACAAAAATATAATATGATTTTGt              >  4:432887/1‑141 (MQ=255)

                                                                                                                                 gTATGTTGGAAAgaatttaaaatttcaatttccaacatactttataattaaaccttataaataagttttgcaaatttatatagaattggtcttactggtttgatgaaatcaccaattaattcttcaacatgtgcattaaaa             <  1:817909‑M1/141‑130 (MQ=255)

                                                                                                                                 gTATGTTGAAAATTGAAATTGTAAATTCTTTCCAACATACTGATCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAACAAAAATAGAATATGATTTTGTa             <  2:1347233/141‑1 (MQ=255)

                                                                                                                                   aTGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTTTTTTATTTTTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAACAAAAATAGAATATGATTTTGTATg           >  4:288017/1‑141 (MQ=255)

                                                                                                                                    tGTTGGAAAgaatttaaaatttcaatttccaacatactttataattaaaccttataaataagttttgcaaatttatatagaattggtcttactggtttgatgaaatcaccaattaattcttcaacatgtgcattaaaaccc          <  2:581103‑M1/141‑133 (MQ=255)

                                                                                                                                     gTTGGAAAgaatttaaaatttcaatttccaacatactttataattaaaccttataaataagttttgcaaatttatatagaattggtcttactggtttgatgaaatcaccaattaattcttcaacatgtgcattaaaaccct         <  2:860037‑M1/141‑134 (MQ=255)

                                                                                                                                     gTTGGAAAgaatttaaaatttcaatttccaacatactttataattaaaccttataaataagttttgcaaatttatatagaattggtcttactggtttgatgaaatcaccaattaattcttcaacatgtgcattaaaaccct         >  3:588948‑M1/1‑8 (MQ=255)

                                                                                                                                     gTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAACAAAAATAGAATATGATTTTGTATGAt         <  1:922725/141‑1 (MQ=255)

                                                                                                                                      ttGGAAAgaatttaaaatttcaatttccaacatactttataattaaaccttataaataagttttgcaaatttatatagaattggtcttactggtttgatgaaatcaccaattaattcttcaacatgtgcattaaaaccctt        <  3:446427‑M1/141‑135 (MQ=255)

                                                                                                                                        ggAAAgaatttaaaatttcaatttccaacatactttataattaaaccttataaataagttttgcaaatttatatagaattggtcttactggtttgatgaaatcaccaattaattcttcaacatgtgcattaaaaccctttt      <  3:119938‑M1/141‑137 (MQ=255)

                                                                                                                                        ggAAAgaatttaaaatttcaatttccaacatactttataattaaaccttataaataagttttgcaaatttatatagaattggtcttactggtttgatgaaatcaccaattaattcttcaacatgtgcattaaaaccctttt      >  4:185322‑M1/1‑5 (MQ=255)

                                                                                                                                        ggAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAACAAAAATAGAATATGATTTTGTATGATTAc      >  1:670522/1‑141 (MQ=255)

                                                                                                                                           aagaatttaaaatttcaatttccaacatactttataattaaagcttataaataagttctgcaaatttatatagaattggtcttactggtttgatgaaatcaccaattaattcttcaacatgtgcattaaaaccctttttaa   <  1:572332‑M1/141‑140 (MQ=255)

                                                                                                                                            attgaaattTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAACAAAAATAGAATATGATTTTGTATGATTACaaaa  >  1:919383/1‑141 (MQ=255)

                                                                                                                                            agaatttaaaatttcaatttccaacatactttataattaaaccttataaataagttttgcaaatttatatagaattggtcttactggtttgatgaaatcaccaattaattcttcaacatgtgcattaaaaccctttttaaa  <  2:1003765‑M1/141‑141 (MQ=255)

ATTTTGGTGTTCAACAATTTAAAAAGGGTTTTAATGCACATGTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAACAAAAATAGAATATGATTTTGTATGATTACAAAA  >  USA300TCH1516_ALE/1265371‑1265651

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.