BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1456948 =	174 (0.950)	17 (0.100) +GTTTT	4/244	NT	8.7%	intergenic (‑62/‑182)	USA300HOU_RS07230/USA300HOU_RS07235	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 1918540	199 (1.090)	17 (0.100) +GTTTT	4/244	NT	8.7%	intergenic (‑258/+240)	USA300HOU_RS07235/USA300HOU_RS09510	hypothetical protein/hypothetical protein

Only 100 of 223 total aligned reads displayed.

ATAATAGTAGTTGAAAATGATTATCAATACCATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAATAAATATTG  >  USA300TCH1516_ALE/1456808‑1457088

taaatagcatctcctcgtgttgattattttggttggctgaccaatatttattctagcacgtagagatgcattttttgtgacaatggtagaaccttttctgaaccatacgcatagcgtatggttttctttttacaaaaaaca                                                                                                                                              <  2:1535937‑M1/1‑1 (MQ=255)

taaatagcatctcctcgtgttgattattttggttggctgaccaatatttattctagcacgtagagatgcattttttgtgacaatggtagaaccttttctgaaccatacgcatagcgtatggttttctttttacaaaaaaca                                                                                                                                              <  4:322477‑M1/1‑1 (MQ=255)

ataataGTAGTTGAAAATGATTATCAATACCATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTtata                                                                                                                                              >  4:641541/1‑141 (MQ=255)

ataataGTAGTTGAAAATGATTATCAATACCATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTtata                                                                                                                                              >  1:596442/1‑141 (MQ=255)

  aatagcatctcctcgtgttgattattttggttggctgaccaatatttattctagcacgtagagatgcattttttgtgacaatggtagaaccttttctgaaccatacgcatagcgtatggttttctttttacaaaaaacaaa                                                                                                                                            >  2:831818‑M1/139‑141 (MQ=255)

  aatagcatctcctcgtgttgattattttggttggctgaccaatatttattctagcacgtagagatgcattttttgtgacaatggtagaaccttttctgaaccatacgcatagcgtatggttttctttttacaaaaaacaaa                                                                                                                                            <  2:790854‑M1/3‑1 (MQ=255)

   ataGTAGTTGAAAATGATTATCAATACCATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATCCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATaaaa                                                                                                                                           >  1:790854/1‑141 (MQ=255)

    tagtagTTGAAAATGATTATCAATACCATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAg                                                                                                                                          <  2:940950/141‑1 (MQ=255)

    tagcatctcctcgtgttgattattttggttggctgaccaatatttattctagcacgtagagatgcattttttgtgacaatggtagaaccttttctgaaccatacgcatagcgtatggttttctttttacaaaaaacAAAAg                                                                                                                                          <  1:128738‑M1/5‑1 (MQ=255)

      gtagtTGAAAATGATTATCAATACCATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCa                                                                                                                                        >  3:158013/1‑141 (MQ=255)

       catctcctcgtgttgattattttggatggctgaccaatatttattctagcacgtagagatgcattttttgtgacaatggtagaaccttttctgaaccatacgcatagcgtatggttttctttttacaaaaaacAAAAGCAg                                                                                                                                       <  1:1547260‑M1/8‑1 (MQ=255)

        agtTGAAAATGATTATCAATACCATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGt                                                                                                                                      >  2:192294/1‑141 (MQ=255)

         gtTGAAAATGATTATCAATACCATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTa                                                                                                                                     <  2:635024/141‑1 (MQ=255)

          ttGAAAATGATTATCAATACCATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTaa                                                                                                                                    <  1:740059/141‑1 (MQ=255)

            cctcgtgttgattattttggttggctgaccaatatttattctagcacgtagagatgcattttttgtgacaatggtagaaccttttctgaaccatacgcatagcgtatggttttctttttacaaaaaacAAAAGCAGTAAAc                                                                                                                                  >  1:1126067‑M1/129‑141 (MQ=255)

             ctcgtgttgattattttggttggctgaccaatatttattctagcacgtagagatgcattttttgtgacaatggtagaaccttttctgaaccatacgcatagcgtatggttttctttttacaaaaaacAAAAGCAGTAAAcc                                                                                                                                 >  1:1240608‑M1/128‑141 (MQ=255)

               aaTGATTATCAATACCATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCt                                                                                                                               >  2:93444/1‑141 (MQ=255)

               aaTGATTATCAATACCATATAGAACATCACCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCt                                                                                                                               >  4:558730/1‑141 (MQ=255)

                aTGATTATCAATACCATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCtt                                                                                                                              <  4:117316/141‑1 (MQ=255)

                  gATTATCAATACCATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTAc                                                                                                                            <  3:216622/141‑1 (MQ=255)

                   aTTATCAATACCATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACg                                                                                                                           <  2:609046/141‑1 (MQ=255)

                   aTTATCAATACCATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACg                                                                                                                           >  1:757631/1‑141 (MQ=255)

                     tATCAATACCATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTa                                                                                                                             <  3:106026/137‑1 (MQ=255)

                       tCAATACCATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGacac                                                                                                                       >  1:886467/1‑141 (MQ=255)

                       tCAATACCATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTAAGacac                                                                                                                       >  2:1276864/1‑141 (MQ=255)

                        cAATACCATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACt                                                                                                                      >  3:597838/1‑141 (MQ=255)

                           tttggttggctgaccaatatttattctagcacgtagagatgcattttttgtgacaatggtagaaccttttctgaaccatacgcatagcgtatggttgtaataaaaaaaaaaacAAAAGCAGTAAACCCTTACGACACTTTa                                                                                                                   >  4:53702‑M1/114‑141 (MQ=255)

                             ccATATAGAACATCCCCCCCACAACGTTTCGTTCATGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAgg                                                                                                                 >  1:388560/1‑141 (MQ=255)

                                    gAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTg                                                                                                          >  3:322477/1‑141 (MQ=255)

                                     aaCATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACATCGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGc                                                                                                         <  4:459687/141‑1 (MQ=255)

                                       cATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCtt                                                                                                       >  1:534538/1‑141 (MQ=255)

                                       cATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCtt                                                                                                       >  4:33858/1‑141 (MQ=255)

                                       cATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCtt                                                                                                       <  2:127632/141‑1 (MQ=255)

                                         tCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCt                                                                                                        <  3:704410/138‑1 (MQ=255)

                                          aatatttattctagcacgtagagatgcattttttgtgacaatggtagaaccttttctgaaccatacgcatagcgtatggttttctttttacaaaaaacAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTg                                                                                                    >  3:291820‑M1/99‑141 (MQ=255)

                                           ccccccACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGt                                                                                                   >  2:1041988/1‑141 (MQ=255)

                                            cccccACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGtt                                                                                                  <  4:113593/141‑1 (MQ=255)

                                            cccccACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGtt                                                                                                  >  2:40535/1‑141 (MQ=255)

                                            cccccACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGtt                                                                                                  <  1:405518/141‑1 (MQ=255)

                                             ccccACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGttt                                                                                                 <  2:979397/141‑1 (MQ=255)

                                              cccACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGtttt                                                                                                <  3:389196/141‑1 (MQ=255)

                                               ccACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGttttt                                                                                               >  1:309441/1‑141 (MQ=255)

                                                cacaACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGtttttt                                                                                              >  3:334635/1‑141 (MQ=255)

                                                   aaCGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTa                                                                                           <  1:884083/141‑1 (MQ=255)

                                                             tCTTGTTTGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAAc                                                                                 <  1:498166/141‑1 (MQ=255)

                                                               ttgttgGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCa                                                                               <  3:612596/141‑1 (MQ=255)

                                                                tgttgGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCAt                                                                              <  2:642567/141‑1 (MQ=255)

                                                                tgttgGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCAt                                                                              <  4:232981/141‑1 (MQ=255)

                                                                   tgGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACg                                                                           >  1:1332985/1‑141 (MQ=255)

                                                                    ggATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACCACGTTTTATAAAAGCAGTAAACCCTTACGACACGTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGc                                                                          <  2:311891/141‑1 (MQ=255)

                                                                    ggATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGc                                                                          <  1:947064/141‑1 (MQ=255)

                                                                      aTTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTa                                                                        <  4:439999/141‑1 (MQ=255)

                                                                      aTTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTa                                                                        >  4:372038/1‑141 (MQ=255)

                                                                        tGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGcatag                                                                      <  4:402275/141‑5 (MQ=255)

                                                                        tGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATg                                                                      <  3:151930/141‑1 (MQ=255)

                                                                        tGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATg                                                                      >  2:546038/1‑141 (MQ=255)

                                                                          gTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGcatagcg                                                                    <  2:229690/141‑7 (MQ=255)

                                                                          gTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCg                                                                    <  2:35316/141‑1 (MQ=255)

                                                                          gTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCg                                                                    <  2:1452969/141‑1 (MQ=255)

                                                                          gTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCg                                                                    >  1:166525/1‑141 (MQ=255)

                                                                          gTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCg                                                                    >  4:165466/1‑141 (MQ=255)

                                                                           tgtgacaatggtagaaccttttctgaaccatacgcatagcgtatggttttctttttacaaaaaacAAAAGCAGTaaa                                                                                                                                   <  2:1557829‑M1/12‑1 (MQ=255)

                                                                            cATTTTCAAATATTCCCCTTTTATATGACCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTa                                                                  <  1:1589566/141‑1 (MQ=255)

                                                                             aTTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTAt                                                                 >  1:1620560/1‑141 (MQ=255)

                                                                              ttttCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATg                                                                >  2:1128427/1‑141 (MQ=255)

                                                                                ttCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGt                                                              <  2:1226376/141‑1 (MQ=255)

                                                                                    aaTATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAg                                                          >  1:701064/1‑141 (MQ=255)

                                                                                          ccccTTTTATATGCCCGTCAAAAACAATATACGTTATAACAACATTTTATAAAAGCAGTAAAACCTTACGATCCTTTAGGTTTACTGCTTTTGTATTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAgg                                                    <  3:104083/141‑1 (MQ=38)

                                                                                          ccccTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAgg                                                    >  3:464461/1‑141 (MQ=255)

                                                                                           cccTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGt                                                   <  3:217827/141‑1 (MQ=255)

                                                                                           cccTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGt                                                   <  1:1498937/141‑1 (MQ=255)

                                                                                              ttttATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCt                                                >  1:1067693/1‑141 (MQ=255)

                                                                                              ttttATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCt                                                <  2:757631/141‑1 (MQ=255)

                                                                                              ttttATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCt                                                <  1:722490/141‑1 (MQ=255)

                                                                                                 tataTGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTAcc                                             <  2:1024419/141‑1 (MQ=255)

                                                                                                    atGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCAtt                                          >  2:1605161/1‑141 (MQ=255)

                                                                                                    atGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCAtt                                          >  3:410106/1‑141 (MQ=255)

                                                                                                     tGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGt                                                   >  1:23718/1‑131 (MQ=255)

                                                                                                     tGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGt                                                   <  2:23718/131‑1 (MQ=255)

                                                                                                     tGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTg                                         >  3:473867/1‑141 (MQ=255)

                                                                                                     tGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTg                                         >  2:1115417/1‑141 (MQ=255)

                                                                                                     tGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACAATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTg                                         >  2:510255/1‑141 (MQ=255)

                                                                                                         cGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTAATGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTcac                                     >  2:215265/1‑141 (MQ=255)

                                                                                                               aGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAg                                                                                      >  4:622678/1‑86 (MQ=255)

                                                                                                               aGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACaaaaaa                               <  1:1205057/141‑1 (MQ=255)

                                                                                                                  cAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGc                            >  1:1556959/1‑141 (MQ=255)

                                                                                                                  cAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGc                            >  1:1573329/1‑141 (MQ=255)

                                                                                                                   aaTATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCa                           <  1:427898/141‑1 (MQ=255)

                                                                                                                    atatACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCAt                          >  1:1014010/1‑141 (MQ=255)

                                                                                                                       taCGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCAtctc                       >  1:85356/1‑141 (MQ=255)

                                                                                                                       taCGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCAtctc                       <  1:1225020/141‑1 (MQ=255)

                                                                                                                           ttATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACg                   <  2:702681/141‑1 (MQ=255)

                                                                                                                            tataACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGt                  >  1:502261/1‑141 (MQ=255)

                                                                                                                            tataACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGt                  >  1:650542/1‑141 (MQ=255)

                                                                                                                             ataACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTg                 >  1:1420600/1‑141 (MQ=255)

                                                                                                                               aacaacGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCAAAAAAAATGCATCTCTACGTGCt               <  2:1497148/141‑1 (MQ=255)

                                                                                                                                 caacGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAg             <  3:628028/141‑1 (MQ=255)

                                                                                                                                      ttttATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGaataa        <  1:232567/141‑1 (MQ=255)

                                                                                                                                           taAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAATAAATAtt   >  4:33177/1‑141 (MQ=255)

                                                                                                                                           taAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAATAAATAtt   >  2:1295320/1‑141 (MQ=255)

ATAATAGTAGTTGAAAATGATTATCAATACCATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAATAAATATTG  >  USA300TCH1516_ALE/1456808‑1457088

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.