BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1456948 =	174 (0.950)	17 (0.100) +GTTTT	4/244	NT	8.7%	intergenic (‑62/‑182)	USA300HOU_RS07230/USA300HOU_RS07235	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 1918540	199 (1.090)	17 (0.100) +GTTTT	4/244	NT	8.7%	intergenic (‑258/+240)	USA300HOU_RS07235/USA300HOU_RS09510	hypothetical protein/hypothetical protein

Only 100 of 244 total aligned reads displayed.

GACATTAAATAGCATCTCCTCGTGTTGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCTTCATGCCAAAATCGCATCACTCATTTAATGG  >  USA300TCH1516_ALE/1918401‑1918679

 aCATTAAATAGCATCTCCTCGTGTTGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAtt                                                                                                                                           >  2:379657/1‑141 (MQ=31)

 aCATTAAATAGCATCTCCTCGTGTTGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAtt                                                                                                                                           >  1:1346850/1‑141 (MQ=31)

 aCATTAAATAGCATCTCCTCGTGTTGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAaa                                                                                                                                           <  2:1085301‑M2/141‑3 (MQ=255)

  cATTAAATAGCATCTCCTCGTGTTGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTa                                                                                                                                          <  1:776894/141‑1 (MQ=32)

   aTTAAATGGCATCTCCTCGTGTTGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACGATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTaa                                                                                                                                         >  1:1313501/1‑141 (MQ=17)

   aTTAAATAGCATCTCCTCGTGTTGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAaaaa                                                                                                                                         >  1:1389555‑M2/1‑137 (MQ=255)

   aTTAAATAGCATCTCCTCGTGTTGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCCTTTCTGAACCATACGCATAGCGTATGGTATTCTTTTTACCAaaaa                                                                                                                                         <  1:1005033‑M2/141‑5 (MQ=255)

     tAAATAGCATCTCCTCGTGTTGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAaaaaca                                                                                                                                       <  4:322477‑M2/141‑7 (MQ=255)

      aaaTAGCATCTCCTCGTGTTGATTATTTTGTTTTTTTTTCCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAaga                                                                                                                                      >  2:587624/1‑141 (MQ=11)

       aaTAGCATCTCCTCGTGTTGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAaaaacaaa                                                                                                                                     >  1:1595257‑M2/1‑133 (MQ=255)

       aaTAGCATCTCCTCGTGTTGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAaaaacaaa                                                                                                                                     <  2:790854‑M2/141‑9 (MQ=255)

       aaTAGCATCTCCTCGTGTTGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAagag                                                                                                                                     <  2:1376418/141‑1 (MQ=35)

       aaTAGCATCTCCTCGTGTTGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGGTTTCTTTTTACAAaaaacaaa                                                                                                                                     <  3:229104‑M2/141‑9 (MQ=255)

        aTAGCATCTCCTCGTGTTGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAaaaacaaaa                                                                                                                                    >  1:1018490‑M2/1‑132 (MQ=255)

         tAGCATCTCCTCGTGTTGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAaaaacaaaag                                                                                                                                   <  1:128738‑M2/141‑11 (MQ=255)

         tAGCATCTCCTCGTGTTGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGcc                                                                                                                                   <  4:182870/141‑1 (MQ=38)

         tAGCATCTCCTCGTGTTGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGcc                                                                                                                                   <  3:358464/141‑1 (MQ=38)

            cATCTCCTCGTGTTGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAAc                                                                                                                                >  1:1187245/1‑141 (MQ=40)

            cATCTCCTCGTGTTGATTATTTTGGATGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAaaaacaaaagcag                                                                                                                                <  1:1547260‑M2/141‑14 (MQ=255)

             aTCTCCTCGTGTTGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAaaaacaaaagcagt                                                                                                                               <  3:308754‑M2/141‑15 (MQ=255)

             aTCTCCTCGTGTTGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAAcc                                                                                                                               >  1:801954/1‑141 (MQ=40)

             aTCTCCTCGTGTTGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAAcc                                                                                                                               >  3:563685/1‑141 (MQ=40)

             aTCTCCTCGTGTTGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTCTTTGTCACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAAcc                                                                                                                               <  1:1400876/141‑1 (MQ=255)

                 cctcGTGTTGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAaaaacaaaagcagtaaac                                                                                                                           >  1:1126067‑M2/1‑123 (MQ=255)

                  ctcGTGTTGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAaaaacaaaagcagtaaacc                                                                                                                          >  1:1240608‑M2/1‑122 (MQ=255)

                   tcGTGTTGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCgttgtt                                                                                                                         <  1:1095568/141‑1 (MQ=255)

                       gtTGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAg                                                                                                                     >  1:604294/1‑141 (MQ=255)

                       gtTGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAg                                                                                                                     >  2:951641/1‑141 (MQ=255)

                        ttGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGt                                                                                                                    <  3:38616/141‑1 (MQ=255)

                        ttGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGt                                                                                                                    <  2:1585729/141‑1 (MQ=255)

                         tGATTATTTTGGTTGGCTGACCAATATTTATTCTGGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTc                                                                                                                   >  3:661555/1‑141 (MQ=255)

                          gATTATATTGGTTGGCTGACCAATCTTTATTCTAGCACGTAGAGATGCACTTTTTGTGGGAATGGTAGAACCTTTTCTGAACCATGCGCATAGCGTATGGTTGTCTTTTTACAATTAAAGAGCTAACCGTTGGTAGAGTCt                                                                                                                  >  2:1273577/1‑141 (MQ=14)

                                tttGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAaaaacaaaagcagtaaacccttacgacacttta                                                                                                            >  2:935270‑M2/1‑108 (MQ=255)

                                tttGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAAt                                                                                                            <  1:908059/141‑1 (MQ=255)

                                tttGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTGTAATAAAAAAAaaaacaaaagcagtaaacccttacgacacttta                                                                                                            >  4:53702‑M2/1‑108 (MQ=255)

                                  tggttggCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATgg                                                                                                          <  1:951700/141‑1 (MQ=255)

                                   ggttggCTGACCAATATTTATTCTAGCACGTAGAGCTGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGt                                                                                                         >  1:1445229/1‑141 (MQ=255)

                                   ggttggCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTTTCAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTAGGGTTTTCTTTTTACAATTAAAGAGCCAACGGTTGTTATAGTCTAACAGTGGt                                                                                                         >  4:250434/1‑141 (MQ=17)

                                   ggttggCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGt                                                                                                         >  1:1609603/1‑141 (MQ=255)

                                   ggttggCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGt                                                                                                         >  3:686308/1‑141 (MQ=255)

                                   ggttggCNGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGt                                                                                                         <  2:1239903/141‑1 (MQ=255)

                                     ttggCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTg                                                                                                       <  2:398215/141‑1 (MQ=255)

                                     ttggCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTg                                                                                                       <  2:1502702/141‑1 (MQ=255)

                                            aCCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGctcctc                                                                                                <  1:577873/141‑1 (MQ=255)

                                              cAATATTTATTCTAGCACGTAGAGATGCATTTTTTTTTTTTTTGTTTTAACCATATCTGAACCATACGCATAGCATATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGATTTGCTCCTCtt                                                                                              >  4:84524/1‑141 (MQ=18)

                                                   tttattCTAGCACGTAGAGATGCATTTTTTTTTTTTTTTTTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTAtttt                                                                                         >  2:1192470/1‑141 (MQ=21)

                                                     tattCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTAt                                                                                       >  3:490162/1‑141 (MQ=255)

                                                     tattCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTAt                                                                                       <  4:285824/141‑1 (MQ=255)

                                                       ttCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTAtgt                                                                                     >  1:882823/1‑141 (MQ=255)

                                                       ttCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTAtgt                                                                                     >  4:376325/1‑141 (MQ=255)

                                                        tCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTAtgtg                                                                                    >  1:1054183/1‑141 (MQ=255)

                                                        tCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTAtgtg                                                                                    >  1:376088/1‑141 (MQ=255)

                                                        tCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTAAAATTAAAGAGCCAACCGTTGTTATCGTCTAACAATGGTTGGCTCCTCTTATTTTAtgtc                                                                                    >  2:220769/1‑140 (MQ=255)

                                                         cTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGc                                                                                   <  1:484441/141‑1 (MQ=255)

                                                           aGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTa                                                                                 <  1:1497951/141‑1 (MQ=255)

                                                            gCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTaa                                                                                >  3:112546/1‑141 (MQ=255)

                                                             cACGTAGAGATGCATTTTTTTTTTTTTTTTTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTaaa                                                                               >  2:1634399/1‑141 (MQ=25)

                                                             cACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTACGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTaaa                                                                               >  2:1034971/1‑141 (MQ=255)

                                                                  agagATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAAttt                                                                          <  4:1889/141‑1 (MQ=255)

                                                                   gagaTGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTta                                                                         >  2:83269/1‑141 (MQ=255)

                                                                        gCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACTATTAAATAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAgtc                                                                    >  4:638957/1‑139 (MQ=255)

                                                                              tttGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCGACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAAtttt                                                              <  1:580585/141‑1 (MQ=255)

                                                                               ttGTGACAATGGTCGACCCGTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTtta                                                             <  3:37614/141‑1 (MQ=255)

                                                                               ttGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTtta                                                             >  3:523575/1‑141 (MQ=255)

                                                                                tgtgACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAaaaacaaaagcagtaaa                                                                                                                            >  1:1557829‑M2/1‑60 (MQ=255)

                                                                                tgtgACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTttat                                                            <  2:1143963/141‑1 (MQ=255)

                                                                                  tgACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTttatta                                                          <  4:477704/141‑1 (MQ=255)

                                                                                   gACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTac                                                         >  1:844630/1‑141 (MQ=255)

                                                                                   gACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTac                                                         <  1:1651969/141‑1 (MQ=255)

                                                                                     cAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTacaa                                                       <  3:307247/141‑1 (MQ=255)

                                                                                      aaTGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTacaac                                                      <  4:563685/141‑1 (MQ=255)

                                                                                          gaaGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATg                                                  <  2:54217/139‑1 (MQ=255)

                                                                                           tAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGt                                                 <  2:1175659/141‑1 (MQ=255)

                                                                                            aGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTa                                                >  1:638392/1‑141 (MQ=255)

                                                                                               aCCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACAt                                             >  2:615438/1‑141 (MQ=255)

                                                                                               aCCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAAGTTATAGGCAATTCTATTACAACAATGTAGAt                                             >  2:1553217/1‑141 (MQ=255)

                                                                                                     tCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAACGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAgg                                       <  4:662204/141‑1 (MQ=255)

                                                                                                       tGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGtt                                     >  1:971245/1‑140 (MQ=255)

                                                                                                         aaCCATACGCTATGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGAc                                   >  1:1290567/1‑141 (MQ=255)

                                                                                                         aaCCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGAc                                   >  4:691546/1‑141 (MQ=255)

                                                                                                         aaCCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGAc                                   <  1:42365/141‑1 (MQ=255)

                                                                                                          aCCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGAcc                                  >  2:613721/1‑141 (MQ=255)

                                                                                                             aTACGCAGAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCTTc                               <  3:641010/141‑1 (MQ=255)

                                                                                                                cGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATATGCTAACAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCTTCATg                            <  4:510221/141‑1 (MQ=255)

                                                                                                                  cATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCTTCATGcc                          <  4:229965/141‑1 (MQ=255)

                                                                                                                  cATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCTTCATGcc                          >  2:430458/1‑141 (MQ=255)

                                                                                                                  cATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCTTCATGcc                          <  3:462095/141‑1 (MQ=255)

                                                                                                                    tAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCTTCATGCCaa                        >  2:703509/1‑141 (MQ=255)

                                                                                                                    tAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCTTCATGCCaa                        >  3:285976/1‑141 (MQ=255)

                                                                                                                    tAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCTTCATGCCaa                        >  2:356203/1‑141 (MQ=255)

                                                                                                                       cGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGATATAGTCTAACAATGGTTGGCCCCTCTTATTGTATGTGCTAAAAATGTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCATCATACCAAAAt                     >  2:1057693/1‑141 (MQ=255)

                                                                                                                        gTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCTTCATGCCAAAATc                    <  2:312557/141‑1 (MQ=255)

                                                                                                                           tGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCTTCATGCCAAAATCGCa                 <  1:454429/141‑1 (MQ=255)

                                                                                                                             gTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCTTCATGCCAAAATCGCATc               <  2:844630/141‑1 (MQ=255)

                                                                                                                               tttCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCTTCATGCCAAAATCGCATCAc             <  3:27442/141‑1 (MQ=255)

                                                                                                                               tttCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCTTCATGCCAAAATCGCATCAc             <  1:166642/141‑1 (MQ=255)

                                                                                                                                  cTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTc                                                                                                                   >  1:117242/1‑36 (MQ=255)

                                                                                                                                   tttttACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCTTCATGCCAAAATCGCATCACTCAt         <  2:461324/141‑1 (MQ=255)

                                                                                                                                      ttACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCTTCATGCCAAAATCGCATCACTCATTTa      <  3:210312/141‑1 (MQ=255)

                                                                                                                                         cAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCGCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCTTCATGCCAAAATCGCATCACTCATTTAATg   >  1:720683/1‑141 (MQ=255)

GACATTAAATAGCATCTCCTCGTGTTGATTATTTTGGTTGGCTGACCAATATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGACCTTCATGCCAAAATCGCATCACTCATTTAATGG  >  USA300TCH1516_ALE/1918401‑1918679

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.