New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 2872577193 (1.060)15 (0.090) 12/232 NT 7.5% intergenic (‑113/+14) rnpA/rpmH Ribonuclease P protein component/50S ribosomal protein L34
?USA300TCH1516_ALE = 2872581 193 (1.160)intergenic (‑117/+10) rnpA/rpmH Ribonuclease P protein component/50S ribosomal protein L34

Only 100 of 242 total aligned reads displayed.

TTTAATTCGGTAAGCTTTTTCCAATAACATCACTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACGTTTATTTGGTTGATAAGTACGT  >  USA300TCH1516_ALE/2872441‑2872720
                                                                                                                                             |                                                                                                                                           
tttAATTCGGTAAGCTTTTTCCAATAACATCACTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAg                                                                                                                                             >  2:1461679/1‑141 (MQ=255)
tttAATTCGGTAAGCATTTTCCAATAACATCACTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATAAAAAAAAAAAAAAAGATCACTGA‑TGAg                                                                                                                                             <  2:1609941/141‑1 (MQ=255)
 ttAATTCGGTAAGCTTTTTCCAATAACATCACTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGt                                                                                                                                            >  1:1174167‑M2/1‑140 (MQ=255)
   aaTTCGGTAAGCTTTTTCCAATAACATCACTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGtca                                                                                                                                          <  1:262930‑M2/141‑4 (MQ=255)
            aGCTTTTTCCAATAACATCACTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTa                                                                                                                                 <  1:67172/141‑1 (MQ=255)
                 tttCCAATAACATCACTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAg                                                                                                                            >  2:1465644/1‑141 (MQ=255)
                 tttCCAATAACATCACTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAACATCACTGA‑TGAGTCAGTGGTATTATGCaa                                                                                                                            >  3:247693/1‑140 (MQ=255)
                  ttCCAATAACATCACTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGa                                                                                                                           >  1:1482433/1‑141 (MQ=255)
                  ttCCAATAACATCACTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑CTCAtcagtgatcttttttttc                                                                                                                           >  4:347139‑M2/1‑123 (MQ=255)
                   tCCAATAACATCACTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGAt                                                                                                                          <  1:1232710/141‑1 (MQ=255)
                   tCCAATAACATCACTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAAAGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGAt                                                                                                                          <  2:207036/141‑1 (MQ=255)
                   tCCAATAACATCACTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAACTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGACAGTGATCTTATGCAGAt                                                                                                                          >  2:572716/1‑141 (MQ=255)
                     cAATAACATCACTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATaa                                                                                                                        >  2:1180505/1‑141 (MQ=255)
                       aTAACATCACTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATaaaa                                                                                                                      <  1:956280/141‑1 (MQ=255)
                               aCTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TTAGTCAGTGATCTTATGCAGATAAAACTTTACgg                                                                                                              >  4:402164/1‑141 (MQ=255)
                               aCTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACgg                                                                                                              >  3:308471/1‑141 (MQ=255)
                               aCTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAAATTTACgg                                                                                                              >  1:1123906/1‑141 (MQ=255)
                               aCTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAA‑ATTACCTA‑TGAGTCAGTGGACTTATTCAAATCAAACTTTAAGGc                                                                                                             >  3:17684/1‑141 (MQ=255)
                                    cTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCttt                                                                                                         <  1:1296289/141‑1 (MQ=255)
                                     ttatttatCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTa                                                                                                        >  1:855910/1‑141 (MQ=255)
                                      tatttatCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTac                                                                                                       >  2:625303/1‑141 (MQ=255)
                                        tttatCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTtcgt                                                                                                     >  3:502798/1‑140 (MQ=255)
                                              gTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACgg                                                                                               >  1:511835/1‑141 (MQ=255)
                                                ttttATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGgcg                                                                                             <  1:611293/141‑1 (MQ=255)
                                                   tATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGACTCAcagtgatcttttttttcgtttaaattaagaataaatagaaatttatgtta                                                                                            >  1:755557‑M2/1‑91 (MQ=255)
                                                   tATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGgcgcgc                                                                                          <  4:150347/141‑1 (MQ=255)
                                                    aTTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCt                                                                                         <  1:930422/141‑1 (MQ=255)
                                                      ttGATGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAACGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTaa                                                                                       <  4:230937/141‑1 (MQ=255)
                                                       tGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTaaa                                                                                      >  2:1423673/1‑141 (MQ=255)
                                                       tGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAAATTAAACGAAAACAAAGCTCACTGA‑TGAGTCCGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTaaa                                                                                      <  1:992912/141‑1 (MQ=255)
                                                        gAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTaaaa                                                                                     >  4:394242/1‑141 (MQ=255)
                                                        gAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTaaaa                                                                                     >  4:216135/1‑141 (MQ=255)
                                                        aaagCTATATATAAACTTCTATTGAGCTTAAAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑CTCAtcagtgatcttttttttcgtttaaattaagaataaatagaaatttatgttataagc                                                                                     >  2:1377776‑M2/2‑85 (MQ=255)
                                                           gCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACtt                                                                                  >  1:165239/1‑141 (MQ=255)
                                                              atatTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTAc                                                                               <  1:460888/141‑1 (MQ=255)
                                                                ttttAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACgg                                                                             <  2:1215371/140‑1 (MQ=255)
                                                                atTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑CGAGTCAGTGATCTTATCCAGCCAAAACTTTCCCGTCTTTACGCCGACGGCGCGCTAACACTCTACgg                                                                             <  2:413770/141‑1 (MQ=255)
                                                                 tttAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGc                                                                            >  2:448933/1‑141 (MQ=255)
                                                                   tAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCa                                                                          <  2:1144502/141‑1 (MQ=255)
                                                                    aaaaTTCTATCGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTTAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCAt                                                                         >  2:693470/1‑141 (MQ=255)
                                                                    aaaCTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCAt                                                                         <  1:593897/141‑1 (MQ=255)
                                                                        ttCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCAttttt                                                                     <  4:210780/141‑1 (MQ=255)
                                                                        ttCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCAttttt                                                                     <  1:1559246/141‑1 (MQ=255)
                                                                         tCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCAtttttt                                                                    >  2:103357/1‑141 (MQ=255)
                                                                          ttATTGAGTTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTtg                                                                   <  2:1551904/140‑1 (MQ=255)
                                                                           tATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTtgt                                                                  >  1:1442829/1‑141 (MQ=255)
                                                                            aTTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTtgtg                                                                 >  2:788238/1‑141 (MQ=255)
                                                                            aTTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTtgtg                                                                 >  1:54382/1‑141 (MQ=255)
                                                                            aTTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTtgtg                                                                 >  4:597498/1‑141 (MQ=255)
                                                                              tGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑CTCAtcagtgatcttttttttcgtttaaattaagaataaatagaaatttatgttataagctcaatagaagtttaaatatagc                                                               >  1:663142‑M2/1‑63 (MQ=255)
                                                                                 gCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGATGCAGTGAGCTTATGCAGATAAAACGTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCAt                                                            >  3:315324/1‑141 (MQ=255)
                                                                                 gCTTAGAACATAAATGTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCAt                                                            <  2:1091977/141‑1 (MQ=255)
                                                                                   ttATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGc                                                          <  4:640084/141‑1 (MQ=255)
                                                                                      taACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGTGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGtt                                                       <  1:1530091/141‑1 (MQ=255)
                                                                                       aaCATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGttt                                                      <  1:288901/141‑1 (MQ=255)
                                                                                         cATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATggtttcag                                                    <  1:11561/141‑8 (MQ=255)
                                                                                         cATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTc                                                    <  2:336216/141‑1 (MQ=255)
                                                                                                ttCTATTTATTCTTAATTAAAAATAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAAcc                                             <  4:375780/141‑1 (MQ=255)
                                                                                                  cTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCAt                                           >  2:940915/1‑141 (MQ=255)
                                                                                                  cTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCAt                                           <  1:448933/141‑1 (MQ=255)
                                                                                                  cTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCAt                                           >  4:474577/1‑141 (MQ=255)
                                                                                                  cTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCAt                                           >  4:547452/1‑141 (MQ=255)
                                                                                                   tatttattCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATg                                          <  1:408872/141‑1 (MQ=255)
                                                                                                     tttattCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGaa                                        <  2:1301825/141‑1 (MQ=255)
                                                                                                        attCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGTCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACtt                                     >  4:115386/1‑141 (MQ=255)
                                                                                                         ttCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACttt                                    >  2:491973/1‑141 (MQ=255)
                                                                                                           cTTAATTTAAACGAAAAAAGAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTAc                                  <  1:1590677/141‑1 (MQ=255)
                                                                                                              aaTTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTAt                               >  1:1080236/1‑141 (MQ=255)
                                                                                                               aTTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATg                              >  2:727455/1‑141 (MQ=255)
                                                                                                               aTTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATg                              >  3:174027/1‑141 (MQ=255)
                                                                                                                 ttAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGtt                            >  4:529003/1‑141 (MQ=255)
                                                                                                                  tAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGttt                           <  1:1210462/141‑1 (MQ=255)
                                                                                                                   aaaCGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTa                          >  4:75971/1‑141 (MQ=255)
                                                                                                                    aaCGAAAAACAAGATCACTGA‑TGCGTCCGTGATCATATGCAGATAAAACTTTAAGGCCTATACGACGAAGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGACACCACGAACTTTACTCTGTTTAc                         >  2:984745/1‑141 (MQ=255)
                                                                                                                     aCGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACg                        >  1:101718/1‑141 (MQ=255)
                                                                                                                     aCGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACg                        >  1:325341/1‑141 (MQ=255)
                                                                                                                     aCGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACg                        <  2:1446679/141‑1 (MQ=255)
                                                                                                                      ggAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAGACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCAATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACGt                       <  2:348382/140‑1 (MQ=255)
                                                                                                                      cGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGCACTTTACTATGTTTACGt                       >  1:197621/1‑141 (MQ=255)
                                                                                                                      cGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACGt                       <  2:855771/141‑1 (MQ=255)
                                                                                                                      cGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACGt                       <  3:392553/141‑1 (MQ=255)
                                                                                                                      cGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACGt                       <  4:462609/141‑1 (MQ=255)
                                                                                                                       gAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACGtt                      >  1:1451466/1‑141 (MQ=255)
                                                                                                                       gAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACGtt                      <  1:695410/141‑1 (MQ=255)
                                                                                                                          aaaaaaGATCACTGA‑TNAGTCAGTGATCTNATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACGTTTAt                   >  3:412812/1‑141 (MQ=255)
                                                                                                                            aaaaGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACGTTTAttt                 <  1:735429/141‑1 (MQ=255)
                                                                                                                              aaGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACGTTTATTTgg               >  2:859540/1‑141 (MQ=255)
                                                                                                                              aaGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACGTTTATTTgg               <  1:974376/141‑1 (MQ=255)
                                                                                                                                gATCACTGA‑TGAGtcagtgatcttttttttcgtttaaattaagaataaatagaaatttatgttataagctcaatagaagtttaaatatagcttcaaataaaaacgataaataagcgagtgatgtatttggaaaaagcttac             <  1:207987‑M2/141‑129 (MQ=255)
                                                                                                                                gATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACGTTTATTTGGtt             >  3:67578/1‑141 (MQ=255)
                                                                                                                                 aTCACTGA‑TGAGtcagtgatcttttttttcgtttaaattaagaataaatagaaatttatgttataagctcaatagaagtttaaatatagcttcaaataaaaaacgataaataagcgagtgatgttattggaaaaagcttac            <  1:1323677‑M2/141‑130 (MQ=255)
                                                                                                                                  tCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACGTTTATTTGGTTGa           >  2:1598024/1‑141 (MQ=255)
                                                                                                                                  tCACAGA‑TGAGacagcgatcttttttttcgcttaaattaagaataaatagaaatttatgttataagctcaatagaagtttaaatatagcttcaaataaaaacgaaaaataagcgagagatgtgattggaaaaagcttaccg           <  2:551570‑M2/141‑131 (MQ=255)
                                                                                                                                   cACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACGTTTATTTGGTTGAt          >  2:782533/1‑141 (MQ=255)
                                                                                                                                    aCTGA‑TGAGtcagtgatcttttttttcgtttaaattaagaataaat                                                                                                        <  2:1491915‑M2/46‑38 (MQ=255)
                                                                                                                                    aCTGA‑TGAGtcagtgatcttttttttcgtttaaattaagaataaat                                                                                                        >  1:1491915‑M2/1‑9 (MQ=255)
                                                                                                                                     cTGA‑TGAGtcagtgatcttttttttcgtttaaattaagaataaatagaaatttatgttataagctcaatagaagtttaaatatagcttcaaataaaaacgataaataagcgagtgatgttattggaaaaagcttaccgaat        <  1:440662‑M2/141‑134 (MQ=255)
                                                                                                                                      tga‑tgaGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACGTTTATTTGGTTGATAAg       <  2:1249056/141‑1 (MQ=255)
                                                                                                                                        a‑tgaGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACGTTTATTTGGTTGATAAGTa     <  1:1409611/141‑1 (MQ=255)
                                                                                                                                           gaGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACGTTTATTTGGTTGATAAGTACg   <  3:518368/141‑1 (MQ=255)
                                                                                                                                             |                                                                                                                                           
TTTAATTCGGTAAGCTTTTTCCAATAACATCACTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA‑TGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACGTTTATTTGGTTGATAAGTACGT  >  USA300TCH1516_ALE/2872441‑2872720

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.