New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012417 = 3069387 (0.450)8 (0.010) 6/266 44.8 4.2% intergenic (‑395/–) USA300HOU_RS14900/– hypothetical protein/–
?NC_012417 = 3118 0 (0.000)intergenic (‑444/–) USA300HOU_RS14900/– hypothetical protein/–
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 118 total aligned reads displayed.

GTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/2923‑3069
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataaaaaGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTAT  <  NC_012417/3118‑2979
                                                                                                                                                                                                                                                                                               
GTTGTTTTTTGAAACGAGTTTGAACGAGTTTCTTCTTTTCTTAATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAA                                                                                                                                                    <  1:104939/141‑1
GTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGTAAGGAAAATTTGACAA                                                                                                                                                    >  2:292218/1‑141
GTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAA                                                                                                                                                    >  1:34002/1‑141
GTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAA                                                                                                                                                    <  1:127263/141‑1
GTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAAGAACTCGATTTTATATATGTAGCTGGAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAA                                                                                                                                                    <  2:92796/141‑1
 tgGTTTTTTAAAACGAGTGTGAACGAGTTTTTTCTTGTCTTGATACTATATAGAAATAAATCGATTTTATATATATAGATGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGAAAAT                                                                                                                                                   <  2:145401/139‑1
 TTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAAT                                                                                                                                                   <  1:29902/141‑1
 TTGTTTTGTGAAAAGAGTTTGAACGAGTTTCTTCTTGTCTTGATAATATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTTCGTGAAAGGAAAATTTGACAAT                                                                                                                                                   <  2:209723/141‑1
 TTGTTGTTAGGAACGAGTGTGAACGAGTTTCTTTTTGTCTTGATACTATATAGAAATAACTTGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAAT                                                                                                                                                   <  2:163168/141‑1
  tagattgTGAAACGAGTGAGAACGAGTTTCGTCTTGTCTTGATACTAGATAGAAATAACGCGATTTTATATATATAGCTGTAACTGATGATATTACAGTGTTGAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATA                                                                                                                                                  <  2:88991/134‑1
  TGTTTTTTGAAATGAATGTTAAAGAGTTTCATCTTGTCTTGATACTATATAGAAATAACTAGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATA                                                                                                                                                  <  2:277490/141‑1
  TGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATA                                                                                                                                                  <  1:262676/141‑1
   GTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATTTAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAA                                                                                                                                                 >  1:11611/1‑141
   GTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACGGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAA                                                                                                                                                 <  2:122138/141‑1
   GTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAc                                                                                                                                                 >  1:129910/1‑140
   GTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAA                                                                                                                                                 <  2:269823/141‑1
   GTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAA                                                                                                                                                 <  1:270746/141‑1
   GTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAA                                                                                                                                                 <  2:143363/141‑1
   GTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAA                                                                                                                                                 <  1:243754/141‑1
   GTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAA                                                                                                                                                 <  2:252210/141‑1
   GTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAA                                                                                                                                                 >  2:187195/1‑141
   GTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAA                                                                                                                                                 <  1:136941/141‑1
   GTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAAATCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAA                                                                                                                                                 <  2:50344/141‑1
    TTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATGTAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAA                                                                                                                                                <  1:216561/141‑1
    TTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAA                                                                                                                                                >  2:292323/1‑141
    TTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAA                                                                                                                                                <  2:268651/141‑1
     TTTTTGAAACGAGTGTGAACGAGTTTGTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAA                                                                                                                                               <  1:98865/141‑1
     TTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAA                                                                                                                                               <  2:254708/141‑1
     TTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAA                                                                                                                                               >  1:98101/1‑141
     TTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAA                                                                                                                                               <  1:47418/141‑1
      TTTTGAAACGAGTGTGAACGAGTTTCTTTCTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAA                                                                                                                                              <  2:254231/141‑1
      TTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCTTGAATGGAACATTTGACAATACAAA                                                                                                                                              >  2:46862/1‑141
      TTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGCAAATTTGACAATAAAAA                                                                                                                                              >  1:125647/1‑141
      TTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAA                                                                                                                                              <  1:148546/141‑1
      TTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAA                                                                                                                                              <  2:256040/141‑1
      TTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAA                                                                                                                                              <  2:232942/141‑1
          GAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGTAAAATTTTACAATAAActaccc                                                                                                                                          >  2:246810/1‑135
                                                            CTCAATTGTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACTTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTT                                                                                        <  1:235681/141‑1
                                                                                  TAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTCTCCTTTCACa                                                                  >  2:85314/1‑140
                                                                                                             GTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAA‑A‑CCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGAGATTTTTTATTGTCAAATTTTCCTTTAACACACAAAAACACTTTTAATCAATATAATAT                                     >  2:2378/1‑141
                                                                                                                     GTGCGTGAAAGGAAAATTTGACAATAAAAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAAGTGGTATTTTTTATTGTCAAATTTTCCATTCAATTATAAAAACATGTTTAAACAATTTAATTTCAAtct                               >  2:34904/1‑138
                                                                                                                        ccTGAAAGGAAAATTTGAGAGTAAAAAGTCCCCCAGTATTATTTAAGATTGGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTTACGCACAAAAACACGTCTAAACACTGTAATATCAACAGTTA                            <  1:85314/139‑1
                                                                                                                                           AATAAAAAGACCCCGAGTAGTATATAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATC         <  2:133292/141‑1
                                                                                                                                           AATAAAAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATC         <  1:96603/141‑1
                                                                                                                                           AATAAAAAGACCACCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATC         <  2:78154/141‑1
                                                                                                                                            acAAAAAGACCCACAGTATTATTTAAGATTCGACACATTAATAATATAATGGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCG        <  2:208617/139‑1
                                                                                                                                            ATAAAAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCG        >  1:279984/1‑141
                                                                                                                                            ATAAAAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCG        <  2:54277/141‑1
                                                                                                                                            ATAAAAAGACCCCCAGTATGATTTAAGATTCGACACCTTAATAATATAACTGGTGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATTAACAGTTACAGCTATATATATAAAATCG        <  2:292366/141‑1
                                                                                                                                             TAAAAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGA       >  1:258868/1‑141
                                                                                                                                             TAAAAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGA       <  1:13516/141‑1
                                                                                                                                             TAAAAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGA       >  1:1947/1‑141
                                                                                                                                              AAAATGACTCCTAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCTCAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAG      <  2:101557/141‑1
                                                                                                                                              AAAAGGACACCCGTTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAG      <  1:112707/141‑1
                                                                                                                                              AAAAAGACCCCCAGTATTATTTAAGATTCTACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAATACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAACTCGAc      <  2:237625/141‑2
                                                                                                                                              AAAAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAG      >  1:31929/1‑141
                                                                                                                                              AAAAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAG      >  2:277262/1‑141
                                                                                                                                              AAAAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAG      <  1:27384/141‑1
                                                                                                                                              AAAAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAG      <  1:88134/141‑1
                                                                                                                                              AAAAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACACTTACAGCTATATATATAAAATCtat      >  2:64294/1‑138
                                                                                                                                              AAAAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGAACAAAAACACATTTAAACACTGTAATATCAACAGTTAAAGCTATATATATAAAATCGAa      >  2:277898/1‑140
                                                                                                                                              AAAAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTGTTTATTGTAAAATTTTCCTTTCACGCAAAATACGACGTTTAAACACTGTAATATCAACAGTTACAGCTATCTATTTACAATCGtt      >  2:161693/1‑139
                                                                                                                                               AAAAGATCCCACGTTTTATTTAATATTCGACACCTTAATAATATAACTCGCGTTTATTATTGTCAAATTTTCTTTTCACGTACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGT     <  2:18258/141‑1
                                                                                                                                               AAAAGACCCCCAGTATTATTTAATATTTGATACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGT     <  2:103969/141‑1
                                                                                                                                               AAAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTTCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGT     <  2:19937/141‑1
                                                                                                                                               AAAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCCACAGTTACAGCTCTATATATAAAATCGAGT     >  1:233830/1‑141
                                                                                                                                               AAAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGT     <  2:11548/141‑1
                                                                                                                                               AAAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGT     <  1:40895/141‑1
                                                                                                                                               AAAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGT     <  1:180771/141‑1
                                                                                                                                               AAAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGT     >  1:182196/1‑141
                                                                                                                                               AAAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGT     <  1:186621/141‑1
                                                                                                                                               AAAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGT     >  1:190153/1‑141
                                                                                                                                               AAAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGT     >  1:227986/1‑141
                                                                                                                                               AAAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGT     >  1:179401/1‑141
                                                                                                                                               AAAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGT     <  1:250088/141‑1
                                                                                                                                               AAAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGT     <  1:100416/141‑1
                                                                                                                                               AAAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGT     <  2:179401/141‑1
                                                                                                                                               AAAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGT     <  2:199895/141‑1
                                                                                                                                               AAAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATACAAAATCGAGT     >  2:209993/1‑141
                                                                                                                                               AAAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAAGTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATTCACAGTTACATCTATATATATAAAATCGAGT     >  2:207925/1‑141
                                                                                                                                               AAAAGACCCACAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGT     <  2:22603/141‑1
                                                                                                                                                cAAGACCCCCAGACTTATCTAGGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTT    <  2:73420/140‑1
                                                                                                                                                AAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTT    <  1:94530/141‑1
                                                                                                                                                AAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTT    <  1:44813/141‑1
                                                                                                                                                AAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTT    <  2:9339/141‑1
                                                                                                                                                AAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTT    <  1:25889/141‑1
                                                                                                                                                AAAGACCCCCAGTATTAGTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTT    <  2:148042/141‑1
                                                                                                                                                 AAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTA   >  2:208150/1‑141
                                                                                                                                                 AAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTGTAGTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTA   <  1:11087/141‑1
                                                                                                                                                 AAGACCCCCAGTATTATTTAAGATTCCACCCATTCACGATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTA   >  2:94309/1‑141
                                                                                                                                                  AGACCTCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTAT  <  2:51025/141‑1
                                                                                                                                                  AGACCCCCAGTATTATTTAAGATTCGACATCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTAT  <  2:283098/141‑1
                                                                                                                                                  AGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTGATATCAACAGTTACAGCTATATATATAAAATCGAGTTAT  <  1:237411/141‑1
                                                                                                                                                  AGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTAT  >  1:175095/1‑141
                                                                                                                                                  AGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTAT  <  1:173605/141‑1
                                                                                                                                                  AGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTAT  >  1:165206/1‑141
                                                                                                                                                  AGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTAT  <  1:277010/141‑1
                                                                                                                                                  AGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTAT  <  1:281890/141‑1
                                                                                                                                                  AGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTAT  <  2:187519/141‑1
                                                                                                                                                  AGACCCCCAGTATTATTTAAGATTCGACACCGTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACACTTACAGCTATATATATAAAATCGAGTTAT  <  1:122179/141‑1
                                                                                                                                                                                                                                                                                               
GTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/2923‑3069
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataaaaaGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTAT  <  NC_012417/3118‑2979

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.