New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012417 = 1177813 (0.940)5 (0.010) 4/268 47.0 0.64% coding (18/192 nt) USA300HOU_RS15665 hypothetical protein
?NC_012417 = 1180 782 (0.950)coding (15/192 nt) USA300HOU_RS15665 hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 798 total aligned reads displayed.

TGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGCAGGAATTTAGAAAAACATGTGGAAGTTTTAAAGGATT  >  NC_012417/1040‑1320
                                                                                                                                            |                                                                                                                                            
         tatgataCAAATGCTTTAATTAGTAACAAAAAAATAAGACAAACTCAATATATTGTGTCACAAAAATAAGACAGTACATCTTTGTATTATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCt                                                                                                                                     <  2:55411/135‑1 (MQ=255)
           tatgACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTAt                                                                                                                                   <  2:237942/139‑1 (MQ=255)
            gtgACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATc                                                                                                                                  <  1:216883/141‑1 (MQ=255)
            gtgACAAATGCTGTATGTAGTGACACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATc                                                                                                                                  <  2:120758/141‑1 (MQ=255)
            gtgAAAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATc                                                                                                                                  <  2:268720/141‑1 (MQ=255)
             tgACAAAGGCTGTATGTCGTCTCACAAACATAAAACAAAGGCAATATAAGGAGACACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCa                                                                                                                                 <  1:41874/141‑1 (MQ=21)
                 aaaTGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCAtttt                                                                                                                             <  2:204087/141‑1 (MQ=255)
                 aaaGGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCAtttt                                                                                                                             <  2:87006/141‑1 (MQ=255)
                      cTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTACAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCAAGACCTATCATTTTTGact                                                                                                                        >  1:53263/1‑139 (MQ=255)
                      cTGGATGGAGTGTCACAAAAAAAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAAt                                                                                                                        <  2:273872/141‑1 (MQ=255)
                      atgtatgtaGTGACACAGAAAGAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAAt                                                                                                                        <  2:47266/140‑1 (MQ=255)
                       tgtatgtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTAGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATg                                                                                                                       >  2:22606/1‑141 (MQ=255)
                          atgtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATa                                                                                                                    >  1:59623/1‑141 (MQ=255)
                          atgtaGTGTCACAAAAATAAGACAAACGCAATATACTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTCCCAGAACTATCATTTTTGAACGATa                                                                                                                    >  2:21302/1‑141 (MQ=255)
                            gtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGc                                                                                                                  <  1:195534/141‑1 (MQ=255)
                            gtaGTGTCACAAAAATAAGACAAACGCAATAGATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGc                                                                                                                  <  1:205209/141‑1 (MQ=255)
                             taGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCa                                                                                                                 <  2:49542/141‑1 (MQ=255)
                             taGTGTCAAAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCa                                                                                                                 <  2:295114/141‑1 (MQ=255)
                              aGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCaa                                                                                                                <  2:195756/141‑1 (MQ=255)
                                  tCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATtc                                                                                                            >  1:161971/1‑141 (MQ=255)
                                    acaAAAATACGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATtctc                                                                                                          <  1:280518/141‑1 (MQ=255)
                                    acaAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATtctc                                                                                                          <  1:133415/141‑1 (MQ=255)
                                    acaAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATtctc                                                                                                          >  1:211525/1‑141 (MQ=255)
                                    acaAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATtctc                                                                                                          <  1:227826/141‑1 (MQ=255)
                                        aaaTAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTa                                                                                                      >  1:266158/1‑141 (MQ=255)
                                        aaaTAAGACAAACGCAATATATTGGGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTACCATTTTTGAATGATAGCAACGTCTCCTTa                                                                                                      >  2:102660/1‑141 (MQ=255)
                                          aTAAGAAAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATg                                                                                                    <  2:175677/141‑1 (MQ=255)
                                           aaaGACAAACGCAATATATTGGGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTGTGAATGATAGCAAATTCTCCTTATGc                                                                                                   <  2:168044/140‑1 (MQ=255)
                                             aGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGctc                                                                                                 >  2:164822/1‑141 (MQ=255)
                                             aGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGctc                                                                                                 >  1:104145/1‑141 (MQ=255)
                                             aGACAAACGCAATATAGTGTGTGACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAAGTCTCATTATGctc                                                                                                 >  1:291235/1‑141 (MQ=255)
                                                cAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAATCCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTa                                                                                              <  2:69840/141‑1 (MQ=255)
                                                  aaCGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACg                                                                                            <  1:208234/141‑1 (MQ=255)
                                                  aaCGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACg                                                                                            <  2:160463/141‑1 (MQ=255)
                                                  aaCGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACg                                                                                            <  1:296167/141‑1 (MQ=255)
                                                  aaCGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACg                                                                                            <  2:125414/141‑1 (MQ=255)
                                                  aaCGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACg                                                                                            <  2:150421/141‑1 (MQ=255)
                                                    cGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGa                                                                                          >  1:261011/1‑141 (MQ=255)
                                                     gatatacatTGGGTCACAAAAATAAGACAGTACAGCTTTTTATGATATCACTTTAAAATACCTTAAAACCCCTGTAATTTCTTGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAg                                                                                         <  2:41762/138‑1 (MQ=18)
                                                      cAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGt                                                                                        <  1:150350/141‑1 (MQ=255)
                                                       aaTATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGACTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTATCCTTATGCTTTTACGGAGtt                                                                                       >  2:112823/1‑141 (MQ=255)
                                                              tgtgTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTagag                                                                                <  1:112464/141‑1 (MQ=255)
                                                                 gtCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGaaa                                                                             >  1:100377/1‑141 (MQ=255)
                                                                 gtCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGaaa                                                                             <  1:302356/141‑1 (MQ=255)
                                                                    acaAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGaaaaat                                                                          >  2:22237/1‑141 (MQ=255)
                                                                     aaaaaaTAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGTAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGaaaaatt                                                                         <  2:301332/140‑1 (MQ=255)
                                                                      aaaaaTAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGaaaaatta                                                                        >  2:261882/1‑141 (MQ=255)
                                                                         aaTAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGaaaaattaaaa                                                                     >  1:15444/1‑141 (MQ=255)
                                                                             aGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATtc                                                                 <  2:219891/141‑1 (MQ=255)
                                                                                   tACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGTAGTTTTTAGAGAAAAATTAAAAATTCTCGAtt                                                           >  2:80275/1‑141 (MQ=255)
                                                                                    aCAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGAttt                                                          <  2:282532/141‑1 (MQ=255)
                                                                                      aGCTTTGTATGATATCACTTTAAAGTACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGAttttt                                                        <  1:107917/141‑1 (MQ=255)
                                                                                      aGCTTTGTATGATATCACGTTAAAATACCTTAAAACCCCTCGACTTGCCCGGGCTTCATGACCTATCATTTTTTAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGAttttt                                                        <  1:130212/141‑1 (MQ=255)
                                                                                       gCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATAATTTTTTTATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTg                                                       <  1:191071/141‑1 (MQ=255)
                                                                                          ttGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGACTGTATTGGTATGTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATa                                                    <  1:142436/141‑1 (MQ=21)
                                                                                           tatATGAGAGCACTTCAAAAATACTTAAACACTCTGAAATTTCTGCATTTGCCAGACCCATCAATTTTGAAAGATAACAAACTCTCCTTATGCACTTACTGAGTTTTTAGAGAAAAATTAAAAATTCTCTATTTTTGATaa                                                   <  2:253662/139‑1 (MQ=255)
                                                                                            gTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATaaa                                                  >  1:76944/1‑141 (MQ=255)
                                                                                              aTGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAACTATAAAATTCTCGATTTTTGATaaaaa                                                >  2:74729/1‑141 (MQ=255)
                                                                                              aTGATATCACTTTAAAATAACTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATaaaaa                                                <  2:97279/141‑1 (MQ=255)
                                                                                               tGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATCACCACATCGCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATaaaaaa                                               >  2:108091/1‑141 (MQ=255)
                                                                                                 atatCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACg                                             >  1:186253/1‑141 (MQ=255)
                                                                                                     cACTTTAAAATACCTTAAAACCCCTTGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCt                                         <  2:128963/141‑1 (MQ=255)
                                                                                                      aCTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTg                                        >  2:181092/1‑141 (MQ=255)
                                                                                                       cTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGc                                       <  1:180339/141‑1 (MQ=255)
                                                                                                       cTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGc                                       <  1:243150/141‑1 (MQ=255)
                                                                                                       cTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGc                                       <  2:244406/141‑1 (MQ=255)
                                                                                                         ttAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGAGAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGCAg                                     <  1:48405/141‑1 (MQ=255)
                                                                                                          tAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAACATTCAAAATTCTCGATTTTTGATAAAAAACGCCCTGCAgg                                    >  1:64421/1‑141 (MQ=255)
                                                                                                           aaaaTACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGCGGTTTTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGCAGGa                                   >  1:285524/1‑141 (MQ=21)
                                                                                                            aaaTACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGCAGGaa                                  >  1:92313/1‑141 (MQ=255)
                                                                                                             aaTACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGCAGGAAt                                 <  2:82039/141‑1 (MQ=255)
                                                                                                               tACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGCAGGAAttt                               <  2:277984/141‑1 (MQ=255)
                                                                                                                aCCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGCAGGAATTTa                              <  1:174567/141‑1 (MQ=255)
                                                                                                                aCCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTACAGGAATTTa                              >  2:92226/1‑141 (MQ=255)
                                                                                                                 ccTTACAACCCCGGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCACTTACGGAGTTTATAGATAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGCAGGAATTTAg                             <  1:271477/141‑1 (MQ=21)
                                                                                                                 ccTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGCAGGAATTTAg                             >  1:83011/1‑141 (MQ=255)
                                                                                                                 ccTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGCAGGAATTTAg                             >  1:257174/1‑141 (MQ=255)
                                                                                                                 ccTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGCAGGAATTTAg                             >  1:247039/1‑141 (MQ=255)
                                                                                                                 ccTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGCAGGAATTTAg                             >  2:288052/1‑141 (MQ=255)
                                                                                                                 ccTTAAAACCCCTGGAATTGCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGCAGGAATTTAg                             <  1:169463/141‑1 (MQ=255)
                                                                                                                   ttAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGCAGGAATTTAGaa                           >  1:199235/1‑141 (MQ=255)
                                                                                                                   ttAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGCAGGAATTTAGaa                           <  1:121746/141‑1 (MQ=255)
                                                                                                                      aacccccTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGCAGGAATTTAGaaaaa                        <  2:170927/138‑1 (MQ=255)
                                                                                                                      aaaCCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGCAGGAATTTAGaaaaa                        <  1:34357/141‑1 (MQ=255)
                                                                                                                        aCCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAACAATCTCCTGGAGGAATTTAGAAAAACa                      >  1:127638/1‑141 (MQ=21)
                                                                                                                        aCCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGCAGTAATTTAGAAAAACa                      >  2:26511/1‑141 (MQ=255)
                                                                                                                        aCCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGCAGGAATTTAGAAAAACa                      <  1:98041/141‑1 (MQ=255)
                                                                                                                          cccTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGAAGTAATTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGCAGGAATTTAGAAAAACAtg                    >  1:70832/1‑141 (MQ=255)
                                                                                                                          cccTGGAATTTCGGGCTTTGCCAGACCTAGCATTTTTGAATGATAGCAAATTCTCCTTATGCTCATACGGAGTTTTTAGAGAAAAATTAAAAATTATAAAAAAAAAAAAAAAAACGCCCTGCAGGAATTTAGAAAAACAtg                    <  2:34959/141‑1 (MQ=18)
                                                                                                                            cTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGCAGGAGTTTAGAAAAACAtgtg                  >  1:276661/1‑141 (MQ=255)
                                                                                                                              ggAATTTCTGGCTTTGCCAGGACTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGCAGGAATTTAGAAAAACATGTGGa                <  2:135176/141‑1 (MQ=255)
                                                                                                                              ggAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGCAGGAATTTAGAAAAACATGTGGa                <  1:87972/141‑1 (MQ=255)
                                                                                                                              acaaTTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGCAGGAATTTAGAAAAACATGTGGa                <  1:233279/139‑1 (MQ=255)
                                                                                                                                 aTTTCTGGCTTTGCCAGACCTATCATTTTTTTTTTTTTTTTAATTCTCCTTATGGTCTTACGGAGTTTTTATAGTACAATTAAATATTCTCGATTTTTGATAAAAATAGCCCTGCAGGATTTTAGTATAACATGTGGAAGt             >  2:229980/1‑141 (MQ=255)
                                                                                                                                   ttCTGGCTTTGCCAGACCTATCATTTTTGTTTTATTTCTAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTTATAAAAATCGCCCTGCAGGATTTTAGAAAAATAGTTGGAAGttt           >  2:233490/1‑141 (MQ=255)
                                                                                                                                    tCTTGCTTTGCCAGACCTATAATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAGAAACGCCCTGCAGGAATTTAGAAAAACATGTGGAAGtttt          <  2:207949/141‑1 (MQ=255)
                                                                                                                                     cTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGCAGGAATTTAGAAAAACATGTGGAAGTTTTa         >  1:22377/1‑141 (MQ=255)
                                                                                                                                         cTTTGCCAGAGCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGCAGGAATTTAGAAAAACATGTGGAAGTTTTAAAgg     <  2:142520/141‑1 (MQ=255)
                                                                                                                                         cTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGCAGGAATTTAGAAAAACATGTGGAAGTTTTAAAgg     >  2:189631/1‑141 (MQ=255)
                                                                                                                                            tGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGCAGGAATTTAGAAAAACATGTGGAAGTTTTAAAGGAtt  <  2:11729/141‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                            
TGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGCAGGAATTTAGAAAAACATGTGGAAGTTTTAAAGGATT  >  NC_012417/1040‑1320

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.