New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012417 = 2937607 (1.010)3 (0.010) 3/246 34.3 0.53% intergenic (‑263/–) USA300HOU_RS14900/– hypothetical protein/–
?NC_012417 = 2949 551 (0.950)intergenic (‑275/–) USA300HOU_RS14900/– hypothetical protein/–
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 618 total aligned reads displayed.

GTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATA  >  NC_012417/2809‑3065
                                                                                                                                |                                                                                                                                
gTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTTACATTTATTTTTTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAc                                                                                                                                  <  1:132233/129‑1 (MQ=255)
gTTAATTCGATTTTATCTGATAATCCTTTTGACTTTTTAGAAAGATTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAc                                                                                                                                  >  1:76181/1‑129 (MQ=255)
 ttAATTCGATTTTATTTGATAATTCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTAGTTTGCAGATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACg                                                                                                                                 <  2:141820/129‑1 (MQ=255)
  tAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGa                                                                                                                                >  2:233001/1‑129 (MQ=255)
   aaTTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTTATTTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAg                                                                                                                               <  1:192462/129‑1 (MQ=255)
   aaTTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGACACGAg                                                                                                                               >  2:117999/1‑129 (MQ=255)
   aaTGCGATGTTATTTGATAATCCGTATGACTTTTTAGAAAGATTTATTTATAAATTGGTTTTCATATTAATTTATTTAGGTTTAAAAAAAAAAAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAg                                                                                                                               <  2:88206/129‑1 (MQ=255)
     ttCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAgtg                                                                                                                             >  2:222854/1‑129 (MQ=255)
      tgtatgttATTTGATAATTCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAgtgt                                                                                                                            <  2:164108/123‑1 (MQ=255)
         aTTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATATGTTGTTTTTTGAAACGAGTGTGaa                                                                                                                         <  2:54934/129‑1 (MQ=255)
         aTTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTAATTGGTTTTCACATTAATTTTTTCTCGCTGAAATTATCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGaa                                                                                                                         >  1:234054/1‑129 (MQ=255)
          ttttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTTGTTTTTACATTAATTTATTTAGGTTTATAGTGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAAc                                                                                                                        <  1:204858/129‑1 (MQ=255)
           tttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGATGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTTAAACGAGTGTGAACg                                                                                                                       <  2:214429/129‑1 (MQ=255)
           tttATTTGATAATCCTTTTGAATTTTACAAAGGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGATGGTCATAAAAAGAAGAAGGAATATGTTGTTTTTTGAAACGAGTGTGAACg                                                                                                                       <  2:57804/129‑1 (MQ=255)
            ttATTTGATAATCGTTTTGACTTTTTAAAAAGTTGTGGTTGTTCGTTGGTTTTGATTTTAATTTATTTAGTTTTAGAGGTTTATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGATCGa                                                                                                                      <  2:48240/129‑1 (MQ=255)
            ttATTTGATAATCGTTTTGACTTTTGTGATAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGTGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGa                                                                                                                      <  2:25146/129‑1 (MQ=255)
            ttATTTGATAATCCTTTTAACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTATGTTTAGATTTTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGa                                                                                                                      <  1:140128/129‑1 (MQ=255)
               tttGATAATTCTTTTTAGTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTAATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGtt                                                                                                                   <  2:207496/129‑1 (MQ=255)
                tttaTAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGATGGTTTTTAATATAAGAAGTAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGttt                                                                                                                  <  1:129426/126‑1 (MQ=255)
                 ctaTAATCCTTTTATATTTTTATAAAGTTTTATTTATTCATTTGTTTTCACTTTATTTTATTTATTTTTAGATTGTCATAAAAAGAAGAAGGAATAGGTTGTTTTATGAAACGAGTGTGAACGAGTttc                                                                                                                 <  1:223594/127‑1 (MQ=255)
                  gATAATCCTTTTTACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGATGGTCATATAAATAAGAATGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttct                                                                                                                <  1:3889/129‑1 (MQ=255)
                  gATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCATATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttct                                                                                                                <  1:93388/129‑1 (MQ=255)
                  gATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttct                                                                                                                <  2:210819/129‑1 (MQ=255)
                    ttagtgtttcGACTTTTTAGTAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAATGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                                                              <  2:37346/123‑1 (MQ=39)
                    tAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTAATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttt                                                                                                              >  2:108324/1‑128 (MQ=255)
                     tatttttttGTCTTTTTAGATAGTTTTATTTAGTCATTGGTTGTCACATTAAGTTATTTAGGTTTAGAGAGTCATAATAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTtcttct                                                                                                             <  2:102880/124‑1 (MQ=38)
                     aaTCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTtcttct                                                                                                             <  2:152241/129‑1 (MQ=255)
                      aTCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTcttctt                                                                                                            >  1:190047/1‑129 (MQ=255)
                      aTCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGAGTCAAAAAAAAAAAAAGAAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTcttctt                                                                                                            >  1:172671/1‑129 (MQ=39)
                       tCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                                                           <  1:24820/129‑1 (MQ=255)
                        tcTTTTGACTTTTTAAAAAGTTTTATTTATTCATTGTTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgt                                                                                                          <  2:133525/128‑1 (MQ=255)
                        ccTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgt                                                                                                          <  2:219144/129‑1 (MQ=255)
                         cTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                         <  1:174657/129‑1 (MQ=255)
                           tttGACTTGTTAGAAAGTTTTTTAAATTCATTGATTTTTACATTAATTTATTTAGGTTTAGAGGTTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtctt                                                                                                       <  1:31726/129‑1 (MQ=38)
                             tGACTTTTTAGAAAGTTTTATTTCTTCATTGTTTTTCACATTAATTTATTAAGAATTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGa                                                                                                     >  1:28832/1‑129 (MQ=38)
                             tGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTAACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGa                                                                                                     >  1:6714/1‑129 (MQ=255)
                                cTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGGCATAAAAAGAAGAAGGAATAAGTTGTTTTTTGACACGAAGTTGAACGAGTTTCTTCTTGTCTTGATaa                                                                                                  >  2:93583/1‑128 (MQ=255)
                                cTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGAACATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAAGAGTGTGAACGAGTTTATTCTTGTCTTGATAc                                                                                                  >  1:78361/1‑129 (MQ=255)
                                   tttAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTAATATAGGATTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACtat                                                                                               >  1:56701/1‑129 (MQ=255)
                                    ttAGAAAGTTTTATTTATTCATTGTTTTTCACATTAATTTATTTAGGTTTAGATGGTCTTAAAAAGAAGAATTAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACtata                                                                                              <  1:123385/129‑1 (MQ=38)
                                    ttAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACtata                                                                                              >  1:100091/1‑129 (MQ=255)
                                    ttAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACtata                                                                                              >  2:84817/1‑129 (MQ=255)
                                      agaatattttATTTCTTTATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAATGAATAGGTTGTTTTTTGAAATGAGTGTGAACGAGTTTCTTCTTGTCTTGATACtatata                                                                                            <  2:9130/123‑1 (MQ=38)
                                         aatttttATTTATTTATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGaa                                                                                         <  1:167140/126‑1 (MQ=255)
                                         aaGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGATGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGaa                                                                                         <  1:107844/129‑1 (MQ=255)
                                         aaGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTTAAATGATTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGaa                                                                                         <  1:127/129‑1 (MQ=255)
                                           gTTTTATTTATTCATTGATTTTCACATTAATTTATTTAGGTTGAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAAt                                                                                       <  2:122154/129‑1 (MQ=255)
                                                     ttCATTGGTTTTCATATTAATTTATTTAGGTTTAGAGTGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGAttt                                                                             <  1:163137/129‑1 (MQ=255)
                                                      tCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGAtttt                                                                            >  1:150220/1‑129 (MQ=255)
                                                        aTTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTtat                                                                          <  1:225912/129‑1 (MQ=255)
                                                          tGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTtatat                                                                        <  1:115713/129‑1 (MQ=255)
                                                            gtatttacaTTAATTGATTTAGTTTTAGAGGGTTATAAAAAGAAGTATGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTTTTCTTGTATTGATACTATATAGAAATAACTCGATTTtatatat                                                                      <  2:170618/123‑1 (MQ=37)
                                                             ttttTATATTAATTTATTTAGGTTTTGAGTGTCATAAACAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTATTCTTGTCTTGATCCTCGCCAGAAGTAACTCGATTTtatatata                                                                     <  2:168423/129‑1 (MQ=25)
                                                             ttttCATAATAATGTATTTTGGTTTATTGAGGCATAAAAAGAAGCAAGAATTTGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTTGATTTtatatata                                                                     <  2:68334/129‑1 (MQ=25)
                                                             ttttCACATTAATTTATTTAGGTTTAGAGTGTCATAAAAAGTATAATTAATATGTTGTTTTTTTAAATGAGTTTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTtatatata                                                                     <  1:43255/129‑1 (MQ=38)
                                                             ttttAACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTtatatata                                                                     <  1:19761/129‑1 (MQ=255)
                                                             ttttAAAATTAATTTATTTAGGTTTAGATGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGGCTTGATACTATATAGAAATAACTCGATTTtatatata                                                                     <  2:34292/129‑1 (MQ=255)
                                                                ttataTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTTTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAg                                                                  <  2:31064/125‑1 (MQ=255)
                                                                tCACATTAATTTATTTAGGTTTAGCGGATCTGATATAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAg                                                                  <  1:98637/129‑1 (MQ=38)
                                                                  acaTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGAAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGATTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCt                                                                >  1:83827/1‑129 (MQ=255)
                                                                   caTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTg                                                               >  1:178043/1‑129 (MQ=255)
                                                                    aTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGt                                                              <  1:104781/129‑1 (MQ=255)
                                                                      tAATTTATTTAGGTTTAGAGGGTCATAAAGAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTTTTGATTCTATATAGAAATAACTCGATTTTATATATATAGCTGTaa                                                            <  1:62854/129‑1 (MQ=255)
                                                                      tAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTaa                                                            >  1:181035/1‑129 (MQ=255)
                                                                      tAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAAGAGTGTGCATGAGTTTCTTCTTGTCTTGATACTATATAGACATCACTCGATTTTATATATATAGCTGTaa                                                            <  2:95668/129‑1 (MQ=39)
                                                                        atttatttAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACt                                                          <  2:128242/129‑1 (MQ=255)
                                                                          ttatttaGTTTTAGAGGGTCATAAAAATAAGAAGGAATAGTTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTTTTGTCTTTATTCTATATAGTAATAACTCGATTTTATATATATAGCTGTAACTGt                                                        <  2:4355/129‑1 (MQ=38)
                                                                           tatttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGtt                                                       >  1:21612/1‑129 (MQ=255)
                                                                              ttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGat                                                    >  2:150086/1‑129 (MQ=255)
                                                                               taGGTTTAGAGGGTTATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGata                                                   <  1:208865/129‑1 (MQ=255)
                                                                               taGGTTTAGAGGGTCATAAAAAGAAGAAGAAATATGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGata                                                   <  1:159664/129‑1 (MQ=255)
                                                                               taGGTGTAGACGGTGATAAATAGAAACATTGATAGGTTGTAAAGTGAAACGAGTGTGAACGAGTTTCTTATTTCCTTGATACTATATAGTAATAACTCGATTTTATATATATAGCTGTAACTGTTGata                                                   <  2:202972/129‑1 (MQ=255)
                                                                                aGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAAGAGTGTGAACGAGTTTCTTCTTGTGTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGatat                                                  >  2:63661/1‑129 (MQ=255)
                                                                                  tttgagatGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTTAAACGAGTGTTAACGAGTTTCTTCTTGTCTTAATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTa                                                <  1:35327/125‑1 (MQ=39)
                                                                                   tttAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTAc                                               >  1:46400/1‑129 (MQ=255)
                                                                                        agtgTCATAAGAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAgtgt                                          <  2:125807/126‑1 (MQ=255)
                                                                                          ggTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGCTATTACAGTGttt                                        >  2:187275/1‑129 (MQ=255)
                                                                                           gTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTAAACGAGTTTATAATAGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTa                                       >  1:156292/1‑129 (MQ=255)
                                                                                              aTAAAAAGAAGAAGGAATAGGTTTTTTTTTGAAACTATTGTTAACGATTTTCTTCTTTTCTTTATACTATATATAATTAACTCTATTTTATATATATAGCTATAACTGTTGATATTACAGTGTTTAAAc                                    <  1:74109/129‑1 (MQ=255)
                                                                                                aaaaaTAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACgt                                  <  1:136116/129‑1 (MQ=255)
                                                                                                  aaaGAGGAAGGAATATGATGGTTTATGAAACGAGTGTGAACTAGTTTCTTCTTGTCTTGATACTATATAGAAATAAGTCGATTTTATATATATAGCTTTAACTGTTGTTATTACAGTGTTTAAACgtgt                                <  2:198545/129‑1 (MQ=37)
                                                                                                  aaaGAAGAATGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACgtgt                                <  2:156965/129‑1 (MQ=255)
                                                                                                  aaaGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACgtgt                                <  2:136418/129‑1 (MQ=255)
                                                                                                     gaagaagGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGtttt                             >  2:225389/1‑129 (MQ=255)
                                                                                                             aaTAGGTTGTTTTTTGAAACGAGTGTGATCTAATTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTg                     <  2:113995/129‑1 (MQ=255)
                                                                                                             aaTAGGTTGTTTTTTGAAACGAGTGTGAACTAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTg                     <  1:219108/129‑1 (MQ=255)
                                                                                                             aaTAGGTTGTTTTTTGAAACGAGTATGAACGAGTGTCTTCTTGTCTTGATACTATATAGAAATAACTCTTTTTTATATTTTTTGTTGTAATTGTTGATATTACAGTGTTTAAACGGGTTTTTGTGCGTg                     <  1:182652/129‑1 (MQ=255)
                                                                                                              aTAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAATTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGa                    <  1:88558/129‑1 (MQ=255)
                                                                                                              aTAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGTGTGa                    >  1:143433/1‑129 (MQ=255)
                                                                                                               tAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTATTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTTCGTGaa                   >  2:2861/1‑129 (MQ=255)
                                                                                                                aGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGaaa                  >  1:22046/1‑129 (MQ=255)
                                                                                                                aGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGaaa                  >  2:174780/1‑129 (MQ=255)
                                                                                                                aGGTTGTTTTTAGAAACGATATTGAACGAGCTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGaaa                  >  2:193332/1‑129 (MQ=255)
                                                                                                                 ggTTGTTTTTTGAAACGAGTGTTAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTTTGCTTGAAAg                 <  2:180367/129‑1 (MQ=255)
                                                                                                                     gttTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTATTGATATTACAGTGTTTAAACGTGTTGTTGTGCGTGAAAGGaaa             >  2:76927/1‑129 (MQ=255)
                                                                                                                         tttGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTATAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAAttt         >  1:120179/1‑129 (MQ=255)
                                                                                                                           tGAAACGAGTGTGAACGATTTTCTTCTTGTCTTAATTCTATATATAAATAACTCGATTTTATATATATATCTGTAACTGTTTATATTACAGTGTTTAATCTTGTTTTTTTGCGTGTAAGGAAAATTTGa       <  2:158665/129‑1 (MQ=37)
                                                                                                                           tGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAATTGTTGATATTACAGTGTTTTAACGTGTTTTTGTGCGTGAAAGGAAAATTTGa       <  1:9596/129‑1 (MQ=255)
                                                                                                                           tGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGa       >  1:51896/1‑129 (MQ=255)
                                                                                                                             aaaCGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACa     <  2:146821/129‑1 (MQ=255)
                                                                                                                                |                                                                                                                                
GTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATA  >  NC_012417/2809‑3065

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.