| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2085296 = | 20 (1.080) | 15 (0.910) | 13/228 | 0.3 | 52.8% | coding (173/201 nt) | hlb_1 | Phospholipase C |
| ? | USA300TCH1516_ALE | = 2128343 | 9 (0.550) | coding (1/825 nt) | hlb_2 | Phospholipase C | |||||
AACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCA‑TAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTT > USA300TCH1516_ALE/2085168‑2085423 | attctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtttgtaatttagggacccattagggacggcaaacccaagaaatactgttgttacaaggtttctat > 1:137935‑M1/129‑129 (MQ=255) tctcatttgttagaagaaaaattttaggatgaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGt > 1:133034‑M1/127‑129 (MQ=255) acTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATATTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTGAGTCATAACGTTTATATGTTATCGACCGTTTTGTa < 1:102431/129‑1 (MQ=255) tttgttagaagaaaaaattaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttaaggacccattagggactccaaacccaataaatactgttgttacaaggattcaaTATATCCa < 2:99724‑M1/8‑1 (MQ=255) cATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATCGTGCCAATACCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGCTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCaa > 2:94942/1‑129 (MQ=255) tagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTg < 1:176238‑M1/13‑1 (MQ=255) ttattaGTTGGTGCACTTACTGACTATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTTAAGTTAGTTATTTATAATGTTTATATGTTATCGACCGTTTTGTAGCCAAACTGGAGACTTTTa < 1:12226/129‑1 (MQ=255) ttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagagacacactagggactccaaacccaataaatactgttattacaagatttctaTGTATCCAAAATGAAGACTTTTAAc < 2:101977‑M1/25‑1 (MQ=255) attaGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAAc < 1:113474/129‑1 (MQ=255) taGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAATAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACAt < 1:170231/129‑1 (MQ=255) agaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacacaataaatactgttgttacaacgtttctaTGTATCCAAACTGGAGACTTTTAACATACAAt < 1:228195‑M1/32‑1 (MQ=255) tACTGACAATAGTACCAAAGCCGAATCTAAGAAAGATCATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAACTACTTATc > 2:24659/1‑129 (MQ=255) aacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTc < 1:228735‑M1/44‑1 (MQ=255) aaTAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGAGTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATTCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCaaa < 1:7587/129‑1 (MQ=255) aaaGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAAc > 1:191494/1‑129 (MQ=255) aaaGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTAATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAAc > 1:71665/1‑129 (MQ=255) cGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCa‑t > 1:191792/1‑129 (MQ=255) aagaTGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCAACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCA‑TAATATCAAGGt > 1:37306/1‑129 (MQ=255) tatgctACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCA‑TAATATCAAGGttt < 2:80606/128‑1 (MQ=255) tagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCA‑TAATATCAAGGttt < 2:118172‑M1/74‑1 (MQ=255) gatgatACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCA‑TAATATCAAGGttt < 1:63744/129‑1 (MQ=255) tACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTACCACAGCA‑TGATATCAAGGTTTATAAc < 2:205520/129‑1 (MQ=255) tACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCA‑TAATATCAAGGTTTATAAc < 1:220674/129‑1 (MQ=255) tagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCA‑TAATATCAAGGTTTATAACTttatc < 2:235264‑M1/85‑1 (MQ=255) agggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTAAAAAAGTAAAACAGCA‑TAATATCAAGGTTTATAACTttatca < 1:91027‑M1/86‑1 (MQ=255) aaGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACAGGAAACTTATAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCA‑TAATATCAAAGTTTATAACTttatcatta > 1:148483/1‑129 (MQ=255) ccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGAAGACTTTTAACATAAAATTACTTATAATTCAAAAAGTAAAACAGCA‑TAATATCAAGGTTTATAACTTTATCATTATCaa < 1:94068‑M1/93‑1 (MQ=255) aacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTATCATAAAATTACTTATCATTCAAAAAGTAAAACAGCA‑TAATATCAAGGTTTATAACTTTATCATTATCaataa > 1:134678‑M1/34‑129 (MQ=255) aataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCA‑TAATATCAAGGTTTATAACTTTATCATTATCAATAATACCt < 1:189658‑M1/101‑1 (MQ=255) aataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCA‑TAATATCAAGGTTTATAACTTTATCATTATCAATAATACCt < 2:199464‑M1/101‑1 (MQ=255) aataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAATACAA‑AGAACTAAGATCAAGGTTTATAACTTTATCATTATTAATAATACCt < 2:166500‑M1/101‑1 (MQ=255) ttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCA‑TAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATAtaaaataaaa > 2:91027‑M1/15‑129 (MQ=255) gTTATCGACCGTTTTGTATCCAAACTGGAAACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCA‑TAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATAtaaaataaaa > 1:57430/1‑129 (MQ=255) caaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCCAAAAGTAAAACACCA‑TAATATCAAGCTTTATAACTTTATCATTCTCAATAATACCTCATataaaataaaatct < 2:9080‑M1/118‑3 (MQ=255) attgACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCA‑TAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttt < 2:71665/126‑1 (MQ=255) aTCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACCGCA‑CAAGTTCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttt < 2:191494/129‑1 (MQ=255) aCCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACTGCA‑TAATATCATTGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagg < 1:94942/129‑1 (MQ=255) ttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCA‑TAATATCAAGGTCTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttaggga > 1:118172‑M1/6‑129 (MQ=255) aTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCA‑TAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggacttt < 2:211888‑M1/128‑1 (MQ=255) | AACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCA‑TAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTT > USA300TCH1516_ALE/2085168‑2085423 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |