| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2085296 = | 20 (1.080) | 15 (0.910) | 13/228 | 0.3 | 52.8% | coding (173/201 nt) | hlb_1 | Phospholipase C |
| ? | USA300TCH1516_ALE | = 2128343 | 9 (0.550) | coding (1/825 nt) | hlb_2 | Phospholipase C | |||||
ATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAAT > USA300TCH1516_ALE/2128216‑2128471 | aTTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTTTGTAATTTAGGGACCCATTAGGGACGGCAAACCCAAGAAATACTGTTGTTACAAGGTTTCTAt > 1:137935‑M2/1‑128 (MQ=255) tctcATTTGTTAGAAGAAAAATTTTAGGATGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgt > 1:133034‑M2/1‑126 (MQ=255) aTTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTAAGAAAGTATGTAATTTAGGGACCCATTAGGGACACTAAACCCAATAAATACTGGTGTTACAAGGTGTGTAGGTactc > 2:198609/1‑126 (MQ=255) tttGTTAGAAGAAAAAATTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAAGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGATTCAAtatatcca < 2:99724‑M2/129‑9 (MQ=255) tAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactg < 1:176238‑M2/129‑14 (MQ=255) ttAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGAGACACACTAGGGACTCCAAACCCAATAAATACTGTTATTACAAGATTTCTAtgtatccaaaatgaagacttttaac < 2:101977‑M2/129‑26 (MQ=255) agagGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACACAATAAATACTGTTGTTACAACGTTTCTAtgtatccaaactggagacttttaacatacaat < 1:228195‑M2/129‑33 (MQ=255) aacaacTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattc < 1:228735‑M2/129‑45 (MQ=255) aacTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGAACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACaa > 1:195526/1‑129 (MQ=255) aTTTAGTGACCCATTTGTGACTCCAAACCCAATAAAGACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAatgat < 2:198101/129‑1 (MQ=255) tAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggttt < 2:118172‑M2/129‑75 (MQ=255) aTTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGTGGCAATATATACGCGCTTATTTAATTTGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTc < 1:20348/129‑1 (MQ=255) aTTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGTGCTGATTTAATTTGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTc < 1:20345/129‑1 (MQ=255) tAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatc < 2:235264‑M2/129‑86 (MQ=255) aGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattaaaaaagtaaaacagcataatatcaaggtttataactttatca < 1:91027‑M2/129‑87 (MQ=255) ggACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGa < 2:108628/129‑1 (MQ=255) aCTCCAAACCCAATAAATACTGTTGTTACAAGGTTTAAAAATAACCAAAATAGAAGCAAAATAAACGCACAGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAg > 1:189771/1‑129 (MQ=255) ccAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactgaagacttttaacataaaattacttataattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaa < 1:94068‑M2/129‑94 (MQ=255) aaCCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttatcataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataa > 1:134678‑M2/1‑33 (MQ=255) aaCCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGAGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTg > 1:158124/1‑129 (MQ=255) aCCCAATAAATACTGTTGTTACAAGGTCTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGa > 2:233178/1‑129 (MQ=255) cAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAGACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATaa > 1:187064/1‑129 (MQ=255) aataaataCTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacct < 1:189658‑M2/129‑102 (MQ=255) aataaataCTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacct < 2:199464‑M2/129‑102 (MQ=255) aataaataCTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaaatacaaagaactaagatcaaggtttataactttatcattattaataatacct < 2:166500‑M2/129‑102 (MQ=255) ttACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaa > 2:91027‑M2/1‑14 (MQ=255) cAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattccaaaagtaaaacaccataatatcaagctttataactttatcattctcaataatacctcatataaaataaaatct < 2:9080‑M2/129‑119 (MQ=255) ttCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtctataactttatcattatcaataatacctcatataaaataaaattttaggga > 1:118172‑M2/1‑5 (MQ=255) atgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaattttagggacttt < 2:211888‑M2/129‑129 (MQ=255) | ATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAAT > USA300TCH1516_ALE/2128216‑2128471 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |