New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 52495 =282 (0.770)342 (0.950)
+T		 9/258 NT 53.3% intergenic (+105/‑568) USA300HOU_RS00215/USA300HOU_RS00220 hypothetical protein/hypothetical protein
?USA300TCH1516_ALE = 52988 321 (0.880)intergenic (+598/‑75) USA300HOU_RS00215/USA300HOU_RS00220 hypothetical protein/hypothetical protein

Only 100 of 415 total aligned reads displayed.

ATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/52634‑52495
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGAT  <  USA300TCH1516_ALE/52988‑52856
                                                                                                                                            |                                                                                                                                     
taTTCAAACGATTGCTCTTATTATTTCACGTGATTTTCAAGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGT                                                                                                                                       <  2:1000810/139‑1
ATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGT                                                                                                                                       <  1:507596/141‑1
 TTTCAAACTTTTCGTCTGATTATTTAACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTG                                                                                                                                      <  2:237564/141‑1
  TTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGA                                                                                                                                     <  1:906781/141‑1
    CAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTTTGATTATTTCGCGTGATT                                                                                                                                   >  1:3787313/1‑141
    CAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATT                                                                                                                                   >  1:2641238/1‑141
    CAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATT                                                                                                                                   <  1:1617636/141‑1
    CAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATT                                                                                                                                   >  1:8739/1‑141
     aatgGATTCCTCTTATTATTTCACGTGATTTTCTCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTT                                                                                                                                  <  2:296912/137‑1
     AAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAAGGATTATTCTGATTATTTTACGTGATTT                                                                                                                                  >  1:3355215/1‑141
     AAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTT                                                                                                                                  >  1:3441591/1‑141
       ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTcc                                                                                                                                >  1:789217/1‑139
        CGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTCCGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCG                                                                                                                               >  1:1988564/1‑141
          ATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCG                                                                                                                             <  1:2359002/141‑1
           TTCCTCTGATTATTTCACGAGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGC                                                                                                                            <  2:1899446/141‑1
                  GATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCCCTGATTATTCCACGTGATTTTCGCGCGATTACT                                                                                                                     <  1:3051817/141‑1
                    TTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTAC                                                                                                                   <  1:851417/141‑1
                       TTTCACGTGATTTTCGCGCGATTACTACGATGCTTTCAAACGCTTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGCTGTTTAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGct                                                                                                                >  1:1765208/1‑139
                          CACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCACAATTACTACGATGATTTAAAACGATTACTCTGATAATATCATATGATTTTCTCTAGATTACTAGGATttt                                                                                                             >  2:1816798/1‑138
                          CACGTGATCTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT                                                                                                             <  1:4400634/141‑1
                           ccgccATTTTTGCGCTATTACTACGATGTTTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGAGATTACTACGATGATT                                                                                                            <  2:2715306/136‑1
                               GATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAA                                                                                                        <  1:3294985/141‑1
                                ATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAGGGGCTTGGCCAAAGGATTTCTCGTGATTTCCGCGCGATTACTACGATGTTTTCAAA                                                                                                       >  1:3210739/1‑141
                                ATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAA                                                                                                       >  1:2958352/1‑141
                                 TTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTTATTATTTCACGTGAGTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAAC                                                                                                      <  1:4359492/141‑1
                                 TTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAAC                                                                                                      <  1:3000229/141‑1
                                 TTTTCGAGCGATTACTATGATGATTTCAAACCATCTCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAAC                                                                                                      <  2:2234559/141‑1
                                  TTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACG                                                                                                     <  1:2830963/141‑1
                                   tcCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTCATCCTTTCACATAATTTTCGCGCGATTACTACGATGATTTCAAACGA                                                                                                    <  1:3969205/139‑1
                                   TTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCG                                                                                                                               >  2:1212619/1‑114
                                   TTCGCGATATTACGATTATTATTTCAATGGATTTCTATGATTATTTAACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACta                                                                                                    <  2:1632640/141‑3
                                     CGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATT                                                                                                  <  1:4297256/141‑1
                                     CGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATT                                                                                                  >  1:10735/1‑141
                                            TTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTATGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGA                                                                                           >  1:2073714/1‑141
                                              ACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATT                                                                                         <  1:2293371/141‑1
                                               CTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGTTTCCTCTGATTA                                                                                        >  1:618375/1‑141
                                               CTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTt                                                                                        >  1:3496000/1‑140
                                               CTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTA                                                                                        >  1:974536/1‑141
                                                 ACGATTATTTCAAACCATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATT                                                                                      <  2:3387447/141‑1
                                                 ACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGAT                                                                                                                         <  1:3598691/106‑1
                                                 ACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGAT                                                                                                                         >  2:3598691/1‑106
                                                   GATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTC                                                                                    <  1:3088731/141‑1
                                                   GATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAA                                                                                                        <  1:4081671/121‑1
                                                   GATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATGATCTCACGTGATTTTCGCTCGATTTCTACGATGATTTCAAACTTTTCCTCTGATTATTTt                                                                                    >  2:3818890/1‑140
                                                     TGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCA                                                                                                         <  2:3873865/118‑1
                                                        TTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGTTTTCAAACGATTCCTCTGATTATTTCAggtg                                                                               >  1:1949762/1‑137
                                                          TCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGA                                                                                                    <  1:11817/118‑1
                                                           CAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGA                                                                                                                                     >  1:4020243/1‑84
                                                            AAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCATCTGATTATTTCACGCGATTT                                                                           >  1:742707/1‑141
                                                            AAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCG                                                                                                                               >  2:2485965/1‑89
                                                              ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATT                                                                                                                                   <  1:1395032/83‑1
                                                              ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATT                                                                                                                                   >  2:1395032/1‑83
                                                               CGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAA                                                                                                       <  1:3720414/110‑1
                                                               CGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATT                                                                                                                                   <  1:1342443/82‑1
                                                                GATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGC                                                                                                                              <  1:152802/86‑1
                                                                   TCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTT                                                                                                                                 <  1:4315856/80‑1
                                                                     CTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCG                                                                                                                             >  1:2890495/1‑82
                                                                          ATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGAT                                                                                                                         <  1:1660150/81‑1
                                                                              TTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACT                                                                                                                     >  2:3304296/1‑81
                                                                                  ACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCAC                                                                                  <  2:2618269/112‑1
                                                                                  ACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACT                                                                                                                     <  1:2462222/77‑1
                                                                                   CGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAA                                                                                                       >  2:232310/1‑90
                                                                                   CGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGA                                                                                                                                     >  2:347251/1‑60
                                                                                   CGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGA                                                                                                                                     <  1:2779778/60‑1
                                                                                      GATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTAT                                                                                       <  1:1679266/103‑1
                                                                                       ATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCA                                                                                                         >  2:826471/1‑84
                                                                                       ATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGAT                                                                                                                         >  1:1030050/1‑68
                                                                                           TCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCAC                                                                                  <  2:1959421/103‑1
                                                                                           TCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAA                                                                                                       <  2:917995/82‑1
                                                                                           TCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGAT                                                                                                                >  2:2797086/1‑73
                                                                                           TCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACT                                                                                                                     <  2:724316/68‑1
                                                                                            CGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACT                                                                                                                     >  2:4049691/1‑67
                                                                                            CGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTT                                                                                                                                  <  2:624686/54‑1
                                                                                            CGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATT                                                                                                                                   <  2:2002520/53‑1
                                                                                              CGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGAT                                                                                                                >  1:2181051/1‑70
                                                                                               GCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAA                                                                                                        <  1:2601450/77‑1
                                                                                                      CTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACT                                                                                                                     >  2:1039560/1‑57
                                                                                                      CTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGC                                                                                                                            <  2:1720129/50‑1
                                                                                                      CTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCG                                                                                                                             <  1:1602064/49‑1
                                                                                                      CTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCG                                                                                                                               <  2:4375049/47‑1
                                                                                                        ACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTC                                                                                                          <  2:3354277/66‑1
                                                                                                               TTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTA                                                                                        <  1:4203871/77‑1
                                                                                                               TTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGA                                                                                           <  1:3921168/74‑1
                                                                                                                TTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTA                                                                                        <  1:183148/76‑1
                                                                                                                TTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGA                                                                                           <  1:1212665/73‑1
                                                                                                                TTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGAT                                                                                                   <  2:2094186/65‑1
                                                                                                                TTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAA                                                                                                       >  1:3841295/1‑61
                                                                                                                TTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAA                                                                                                       <  2:3918927/61‑1
                                                                                                                TTCAAACGATTACTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGAT                                                                                                                <  2:1687979/52‑1
                                                                                                                  CAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCAC                                                                                  <  1:2509803/80‑1
                                                                                                                   AAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAAC                                                                                                      <  1:3661691/59‑1
                                                                                                                        ATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATT                                                                                                  <  2:1538615/58‑1
                                                                                                                         ttgccCTGATTATTTCACGTGATTTTCGCGCGATTCCTACGATGATTTCAAACCATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGC              <  2:3732318/136‑1
                                                                                                                            CTCTGATTATTTCACGTGATTTTCGCGCGATTACTAC                                                                                                                   <  2:3078910/37‑1
                                                                                                                             TCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCT                                                                                               >  1:1709760/1‑56
                                                                                                                             TCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAA                                                                                                       <  2:3230224/48‑1
                                                                                                                                  TTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAA                                                                                                       <  2:4290557/43‑1
                                                                                                                                         ACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCAC                                                                                  <  1:3305625/57‑1
                                                                                                                                          CGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCT                                                                                             <  1:2407978/45‑1
                                                                                                                                           GTGATTTTCGCGCGATTACTACGATGATTTCAAACGATT                                                                                                  <  1:1911795/39‑1
                                                                                                                                            |                                                                                                                                     
ATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/52634‑52495
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGAT  <  USA300TCH1516_ALE/52988‑52856

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.