| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2561201 = | 398 (1.090) | 4 (0.010) | 5/232 | NT | 1.2% | intergenic (+30/+33) | USA300HOU_RS13195/cpdA | hypothetical protein/3',5'‑cyclic adenosine monophosphate phosphodiesterase CpdA |
| ? | USA300TCH1516_ALE | 2561237 = | 330 (1.020) | coding (804/807 nt) | cpdA | 3',5'‑cyclic adenosine monophosphate phosphodiesterase CpdA | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TAAAAGTGTGATAGATGATGGCAGATGTTATCTCTGTCCGTGTCTAGGCTATCCAAGACAATGGCGTTCAGAAGATATT‑TACCAGGAAATAAATGAGACGATACAAATAATAGAAATTTAAAATGCGCAAACCTGACCCA‑GTTTGCGCATTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2561354‑2561201‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtttgcgcattttaAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATGGCCCATAA > USA300TCH1516_ALE/2561237‑2561376 TAAAAGTGTGATAGATGATGGCAGATGTTATCTCTGTCCGTGTCTAGGCTATCCAAGACAATGGCGTTCAGAAGATATT‑TACCAGGAAATAAATGAGACGATACAAATAATAGAAATTTAAAATGCGCAAACCTGACCCA‑G > 1:1246011/1‑141TAAAAGTGTGATAGATGATGGCAGATGTTATCTCTGTCCGTGTCTAGGCTATCCAAGACAATGGCGTTCAGAAGATATT‑TACCAGGAAATAAATGAGACGATACAAATAATAGAAATTTAAAATGCGCAAACCTGACCCA‑G > 1:3749762/1‑141TAAAAGTGTGATAGATGATGGCAGATGTTATCTCTGTCCGTGTCTAGGCTATCCAAGACAATGGCGTTAAGAAGATATT‑TACCAGGAAATAAATGAGACGATACAAATAATAGAAATTTAAAATGCGCAAACCTGACCCA‑G > 1:3154276/1‑141TAAAAGTGTGATAGATGATGGCAGATGTTATCCCACTCCCTGTGTGGGCTATCCAAGACAATGGCGTTCAGAAGATATT‑TACCAGGAAATAAATGAGACGATACAAATAATAGAAATTTAAAATGCGCAAACCTGACCCA‑G < 1:4155210/141‑1 AAAAGTGTGATAGATGATGGCAGATGTTATCTCTGTCCGTGTCTAGGCTATCCAAGACAATGGCGTTCAGAAGATATT‑TACCAGGAAATAAATGAGACGATACAAATAATAGAAATTTAAAATGCGCAAACCTGACCCA‑GT > 1:427166/1‑141 AAAAGTGTGATAGATGATGGCAGATGTTATCTCTGTCCGTGTCTAGGCTATCCAAGACAATGGCGTTCAGAAGATATT‑TACCAGGAAATAAATGAGACGATACAAATAATAGAAATTTAAAATACGCAAACCCGACCCA‑GT > 2:1914204/1‑141 AAAGTGTGATAGATGATGGCAGATGTTATCTCTGTCCGTGTCTAGGCTATCCAAGACAATGGCGTTCAGAAGATATT‑TACCAGGAAATAAATGAGACGATACAAATAATAGAAATTTAAAATGCGCAAACCTGACCCA‑GTT < 1:4290985/141‑1 AAAGTGTGATAGATGATGGCAGATGTTATCTCTGTCCGTGTCTAGGCTATCCAAGACAATGGCGTTCAGAAGATATT‑TACCAGGAAATAAATGAGACGATACAAATAATAGAAATTTAAAATGCGCAAACCTGACCCA‑GTT < 2:4371371/141‑1 AAAGTGTGATAGATGATGGCAGATGTTATCTCTGTCCGTGTCTAGGCTATCCAAGACAATGGCGTTCAGAAGATATT‑TACCAGGAAATAAATGAGACGATACAAATAATAGAAATTTAAAATGCGCAAACCTGACCCA‑GTT < 2:1469440/141‑1 AAAGTGTGATAGATGATGGCAGATGTTATCTCTGTCCGTGTCTAGGCTATCCAAGACAATGGCGTTCAGAAGATATT‑TACCAGGAAATAAATGAGACGATACAAATAATAGAAATTTAAAATGCGCAAACCTGACCCA‑GTT > 1:748866/1‑141 AAAGTGTGATAGATGATGGCAGATGTTATCTCTGTCCGTGTCTAGGCTATCCAAGACAATGGCGTTCAGAAGATATT‑TACCAGGAAATAAATGAGACGATACAAATAATAGAAATTTAAAATGCGCAAACCTGACCCA‑GTT > 1:3722619/1‑141 gagaGTGATAGATGATGGCAGATGTTAGCTCTGTCCGTGTCTAGGCTGTCCAAGAAAATGGCGTTCAGAAGATATT‑TGACAGGAAATAAAAGAGACGATACAAATAATAGAAATTTAAAATGCGCAAACCTGACCCA‑GTTT < 2:1519142/137‑1 AAGTGTTGTGGAGGATGGTGGATGTTATCTCTGTCTCTTTCTATGCTATCCAAGATAATGGCGTTCAGAAGATATT‑TACCAGGAAATAAATGAGACGATACAAATAATATAAATTTAAAATGCGCAAACCTGACCCA‑GTTT < 2:4159095/141‑1 AAGTGTGATAGATGATGGCAGATGTTATCTCTGTCCGTGTCTAGGCTATCCAAGACAATGGCGTTCAGAAGATATT‑TACCAGGAAATAAATGAGACGATACAAATAATAGAAATTTAAAATGCGCAAACATGACCCA‑GTTT > 2:2540446/1‑141 AGTGTGATAGCTTGTGGCAGATGTTATCTCTGTCCGTGTCTAGGCTATCCAAGACAATGGCGTTTAGAAGATATT‑TACCAGGAAATAAATGAGACGATACAAATAATAGAAATTTAAAATGCGCAAACCTGACCCA‑GTTTG < 1:2767662/141‑1 AGTGTGATAGATGATGGCAGATTTTATCTCTGTCCGTGTCTTGGCTATCCAAGACAATGGCGTTCAGAAGTTATT‑TACCAGGAAATAAATGAGACGATACAAATAATAGAAATTTAAAATGCGCAAACCTGACCCA‑GTTTG < 1:2550353/141‑1 AGTGTGATAGATGATGGCAGATGTTATCTCTGTCCGTGTCTAGGCTATCCAAGACAATGGCGTTCAGAAGATATT‑TACCAGGAAATAAATGAGACGATACAAATAATAGAAATTTAAAATGCGCAAACCTGACCCA‑GTTTG < 1:3157323/141‑1 AGTGTGATAAATGATGGCAGATGTTATCTCTGTCCGTGGCTAGGCTGTCCAAGACAATGGCGTTCAGAAGATATT‑TTCCAGGAAATAAATGAGACGATACAAATAATAGATATTTAAAATGCGCAAACCTGACCCA‑GTTTG < 2:1587124/141‑1 TGTGATAGATGCTGGCAGATGTTATCTCTGTTCGTGTCTATGCTATCCAAGACAATGTCGTTCAGAAGATATT‑TACCAGGAAATAAATGAGACGATACAAATAATAGAAATTTAACATGCGCAAACCTGACCCA‑GTTTGCG < 2:1214125/141‑1 gttATAGAAGAGGGCAGATGTTATCTCTGTCCGTGTCTAGGCTATCCAAGACAATGGCGTTCAGAAGATATT‑TACATGGAGATAAATGCGACCATACACATAATAGAAATTTAAAATGCGCAAACCTGACCCA‑GTTTGCGC < 2:535128/138‑1 TGATAGATGATGGCAGATGTTATCTCTGTCCGTGTCTAGGCTATCCAAGACAATGGCGTTCAGAAGATATT‑TACCAGGAAATAAATGAGACGATACAAATAATAGAACTTTAAAATGCGCAAACCTGACCCT‑GTTTGCGCt > 1:970574/1‑140 TGATAGATGATGGCAGATGTTATCTCTGTCCGTGTCTAGGCTATCCAAGACAATGGCGTTCAGAAGATATT‑TACCAGGAAATAAATGAGACGATACAAATAATAGAAATTTAAAATGCGCAAACCTGACCCA‑GTTTGCGCA > 1:263396/1‑141 TGATAGATGATGGCAGATGTTATCTCTGTCCGTGTCTAGGCTATCCAAGACAATGGCGTTCAGAAGATATT‑TACCAGGAAATAAATGAGACGATACAAATAATAGAAATTTAAAATGCGCAAACCTGACCCA‑GTTTGCGCA < 1:2496246/141‑1 GATAGATGATGGCAGATGTTATCTCTGTCCGTGTCTAGGCTATCCAAGTCAATGGCGTTCAGAAGATATT‑TACCAGGAAATAAATGAGACGATACAAATAATAGAAACTTAAAATGCGCAAACCTGACCCA‑GTTTGCGCAT < 1:3051524/141‑1 GATAGATGATGGCAGATGTTATCTCTGTCCGTGTCTAGGCTATCCAAGACAATGGCGTTCAGAAGATATT‑TACCAGGAAATAAATGAGACGATACAAATAATAGAAATTTAAAATGCGCAAACCTGACCCA‑GTTTGCGCAT < 1:2223023/141‑1 GATAGATGATGGCAGATGTTATCTCTGTCCGTGTCTAGGCTATCCAAGACAATGGCGTTCAGAAGATATT‑TACCAGGAAATAAATGAGACGATACAAATAATAGAAATTTAAAATGCGCAAACCTGACCCA‑GTTTGCGCAT > 1:735699/1‑141 GATAGATGATGGCAGATGTTATCTCTGTCCGTGTCTAGGCTATCCAAGACAATGGCGTTCAGAAGATATT‑TACCAGGAAATAAATGAGACGATACAAATAATAGAAATTTAAAATGCGCAAACCTGACCCA‑GTTTGCGCAT > 1:3218785/1‑141 GATAGATGATGGCAGATGTTATCTCTGTCCGTGTCTAGGCTATCCAAGACAATGGCGTTCAGAAGATATT‑TACCAGGAAATAAATGAGACGATACAAATAATAGAAATTTAAAATGCGCAAACCTGACCCA‑GTTTGCGCAT < 1:538682/141‑1 GATAGATGATGGCAGATGTTATCTCTGTCCGTGTCTAGGCTATCCAAGACAATGGCGTTCAGAAGATATT‑TACCAGGAAATAAATGAGACGATACAAATAATAGAAATTTAAAATGCGCAAACCTGACCCA‑GTTTGCGCAT > 1:2579614/1‑141 GATACAGGATGACAGATGTTATCTCTGTCCGTGTCTAGGCTATCCAAGACAATGGCGTTCAGAAGATATT‑TAGCAGGAAATAAATGAGACGATACAAATAATAGAAATTTAAAATGCGCAAACCTGACCCA‑GTTTGCGCtt < 2:4338873/141‑3 atgGATGATGGGAGGTGGTAGCTGGGGCCGGGTCTAGGGTAGCCAAGACAATGGCGTTCAGAAGATATT‑TACCAGGAAATAAATGAGACGATACAAATAATAGAAATTTAAAATGCGCAAACCTGACCCA‑GTTTGCGCATT < 2:10691/138‑1 gacATGATTGCAGATTGTATCTCTGTCCGTGTCTAGGCTATCCAAGACAATGGCGTTCAGAAGATATT‑TACCAGGAAATAAATGAGACGATACAAATAATAGAAATTTAAAATGCGCAAACCTGACCCA‑GTTTGCGCATTT < 2:3495902/138‑1 TAGATGATGGCAGATGTTATCTCTGTCCGTGTCTAGGCTATCCAAGACAATGGCGTTCAGAAGATATT‑TACCAGGAAATAAATGAGACGATACAAATAATAGAAATTTAAAATGAGAAAACTGGATCAC‑GTTTACGCATTT > 2:3091111/1‑141 AGATGATGGCAGATGTTATCTCTGTCCGTGTCTAGGCTATCCAAGACAATGGCGTTCAGAAGATATT‑TACCAGGAAATAAATGAGACGATACAAATAATAGAAATTTAAAATGCGCAAACCTGACCCA‑GTTTGCGCATTTT > 1:706309/1‑141 AGATGATGGCAGATGTTATCTCTGTCCGTGTCTAGGCTATCCAAGACAATGGCGTTCAGAAGATATT‑TACCAGGAAATAAATGAGACGATACAAATAATAGAAATTTAAAATGCGCAAACCTGACCCA‑GTTTGCGCATTTT > 1:376666/1‑141 GATGGTGGCAGATGTTATCTCTGTCCGTGTCTAGGCTATCCAAGACAACGGCGTTCAGAAGATATT‑TACCAGGAAATAAATGAGACGATACAAATAATAGAAATTTAAAATGTGCTATCCTGATCCA‑GTTTGCGCATTTTA < 1:3052724/141‑1 GATGATGGCAGATGTTATCTCTGTCCGTGTCTAGGCTATCCAAGACAATGGCGTTCAGAA‑AGATTCTGCCAGGTGATAAATGAGACGATACAAATAATAGAAATTTAAAATGCGCAAACCTGACCCA‑GTTTGCGCATTTTA < 1:4377263/141‑1 GATGATGGCAGATGTTATCTCTGGCCGTGTCTAGGCTATCCAAGACAATGGCGTTCAGAAGATATT‑TACCAGGAAATAAATGAGACGATACAAATAATAGAAATTTAAAATGCGCAAACCTGACCCA‑GTTTGCGCATTTTA < 1:2907738/141‑1 ATGATGGCAGATGTTATCTCTGTCAGTGTCTAGGCTATCCAAGACAATGGCGTTCAGAAGATATT‑TACCAGGAAATAAATGAGACGATACAAATAATAGAAATTTAAAATGCGCAAACCTGACCCA‑GTTTTCGCATactat > 2:2275477/1‑136 GATGGCAGATGTTATCTCTGTCCGTGTCTAGGCTATCCAAGACAATGGCGTTCAGAAGATATT‑TACCAGGAAATAAATGAGACGATACAAATAATAGAAATTTAAAATGCGCAAACCTGACCCA‑GTTTGCGCATTTTctgt > 2:2721293/1‑137 tAGAAGATATT‑TACCAAGAAATAAATGAGACGATACAAATAATAGAAATTTAAAATGCGCAAACTGGGTCAG‑GTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGC < 2:3370325/140‑1 GGAAATAAATGAGACGATACAAATAATAGAAATTTAAAATGCGCAAA‑CTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGC < 1:3091111/141‑1 CGCAAACCTGACCCA‑GTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGCCACGGACAGAGATAACATCTGCCATCATCTATCACc > 1:2204003/1‑140 TGACCCA‑GTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACG < 1:978626/141‑1 tcatGTTTGCGTATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCGTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAA < 2:1165916/137‑1 agtTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAAT < 1:2171569/138‑1 gtTTTGCGCATTTGATTTTCCGATTGTTTGTATCGTTTTATTTATTTTGTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACTAAAATG < 2:908921/139‑1 ggggTGCGCATTTGAAATTTCTATTTTTCGTATCGTCGCATTTATTTCATGGTAACTATCTTCTGAACGCCATTGTCTTGGATAGCCTAGTCACGGACAGAGATAACATCTGCCAGCATCTATCACACTTTTACGAAAATG < 2:2378701/137‑1 ggcTTGCGCAGTGTAAATTTCTATTATTTGTACCGCCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCCATCACACTTTTACGAAAATG < 1:866819/138‑1 gtacGCGCATTTTAAATTTCTAGTAGTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCGTTGTGTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGA < 2:4108785/137‑1 GTTTGCGTATTTTAAATTTCTATTATTTGTATCTTCTCATTTGTTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGATATAACATCTGCCATCATCTATCACACTTTTACGAAAATGA < 2:1562585/141‑1 GTTTGCGCATTTTAAATTTCTATTATTTGTCTCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGA < 2:2153113/141‑1 GTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGA < 1:4255472/141‑1 GTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGACTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGA < 2:1122687/141‑1 TTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAA < 1:29869/141‑1 TTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAAC < 1:3636955/141‑1 TTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAAC < 2:4168918/141‑1 TTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAAC < 1:2216546/141‑1 TTGCGCATTTTAAATTTCTATTATTCGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAAC < 1:762271/141‑1 GCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACAT > 1:4034333/1‑141 CGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATG > 1:179797/1‑141 CGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCAATGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATG > 1:1799696/1‑141 cCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATGG < 1:3964009/140‑1 GCATTTTAAATTTCTCTTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTCGAAAATCTATACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATGG < 2:2432782/141‑1 GCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTTTGGAGCAAATAGGCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATGG < 1:1024981/141‑1 GCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATGG < 1:490466/141‑1 GCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATGG < 1:2417535/141‑1 GCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATGG < 1:4002482/141‑1 tATTTTAAATTTCTATTCTTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCCTTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATGGC < 2:2502286/140‑1 tATTTTAAATTTATATTATTTGTATTGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATGGC < 2:304033/140‑1 CATTTTAAATTTGTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTATACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATGGC < 2:2403003/141‑1 CATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCCAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATGGC < 1:1374443/141‑1 CATTGTAAATTGCTATTATTTGTATCGTCTCATTTAGTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATGGC < 1:620092/141‑1 ATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATGGCC < 1:4086535/141‑1 ATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATGGCC < 1:2417697/141‑1 ATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATGGCC < 1:2588488/141‑1 ATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATGGCC < 2:2444247/141‑1 ATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATGGCC < 1:3988808/141‑1 ATTTTAAATTTCTATTATTTGCATCGGCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCATAGACACGTACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACTTGGCC < 2:2547775/141‑1 ATTTTAAATTTCTATTACTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATGGCC < 1:431446/141‑1 TTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATGGCCC < 1:1270631/141‑1 TTTTAAACTTCTATTATTTGTATCGCCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATGGCCC < 1:664512/141‑1 TTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATGGCCCA < 1:3635579/141‑1 TTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATGGCCCA < 1:2675886/141‑1 TTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATGGCCCA < 1:2184985/141‑1 TTTAAATTTCTATTATTTGGATCGTCTCATTTATGTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATGGCCCA < 2:1214942/141‑1 TTTAAATTTCTACTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGACATAACTTCTGCCATCATCTATCACACTTTTACGAAAATGAACATGGCCCA < 1:3712403/141‑1 TTTAAAGTTCTATGATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCGGACAGCCAATGGTATGGATAGCCTAGACACGGAAAGAGATAACATCTGCCATCATCTATCATACTTTTTCGAAAATGAACATGGCCCA < 1:2093316/141‑1 TTAAATTTCTATTATTTGTAGCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATGGCCCAT < 1:3740627/141‑1 AAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACAGGGCCCATAA > 1:2147655/1‑141 TAAAAGTGTGATAGATGATGGCAGATGTTATCTCTGTCCGTGTCTAGGCTATCCAAGACAATGGCGTTCAGAAGATATT‑TACCAGGAAATAAATGAGACGATACAAATAATAGAAATTTAAAATGCGCAAACCTGACCCA‑GTTTGCGCATTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2561354‑2561201‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtttgcgcattttaAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATGGCCCATAA > USA300TCH1516_ALE/2561237‑2561376 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |