BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2561201 =	398 (1.090)	4 (0.010)	5/232	NT	1.2%	intergenic (+30/+33)	USA300HOU_RS13195/cpdA	hypothetical protein/3',5'‑cyclic adenosine monophosphate phosphodiesterase CpdA
*	?	USA300TCH1516_ALE	2561237 =	330 (1.020)	4 (0.010)	5/232	NT	1.2%	coding (804/807 nt)	cpdA	3',5'‑cyclic adenosine monophosphate phosphodiesterase CpdA
Rejected: Frequency below/above cutoff threshold.

Only 100 of 467 total aligned reads displayed.

ATTCGTAAAGAGAAAATGGAATACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATC  >  USA300TCH1516_ALE/2561061‑2561341

    tgggccatgttcattttcgtaaaagtgtgatagatgatggcagatgttatctctgtccgtgtctaggctatccaagacaatggcgttcagaagatatttaccaggacataaatgagacgatccaaataatagaaattTaaa                                                                                                                                           <  2:1214942‑M1/4‑1 (MQ=255)

    tgggccatgttcattttcgtaaaagtgtgatagatgatggcagatgttatctctgtccgtgtctaggctatccaagacaatggcgttcagaagatatttaccaggaaataaatgagacgatacaaataatagaaattTaaa                                                                                                                                           <  1:2184985‑M1/4‑1 (MQ=255)

    tgggccatgttcattttcgaaaaagtatgatagatgatggcagatgttatctctttccgtgtctaggctatccataccattggctgtccgaagatatttaccaggaaataaatgagacgatacaaatcatagaacttTaaa                                                                                                                                           <  1:2093316‑M1/4‑1 (MQ=255)

      ggccatgttcattttcgtaaaagtgtgatagatgatggcagatgttatctctgtccgtgtctaggctatccaagacaatggcgttcagaagatatttaccaggaaataaatgagacgatacaaataatagaaattTAAAAt                                                                                                                                         <  1:2417697‑M1/6‑1 (MQ=255)

        ccatgttcattttcgtaaaagtgtgatagatgatggcagatgttatctctgtccgtgtctaggctatccaagcctatttgctccaaaagatatttaccaggaaataaatgagacgatacaaataatagaaattTAAAATgc                                                                                                                                       <  1:1024981‑M1/8‑1 (MQ=255)

        ccatgttcattttcgtaaaagtgtgatagatgatggcagatgttatctctgtccgtgtctaggctatccaagacaatggcgttcagaagatatttaccaggaaataaatgagacgatacaaataatagaaattTAAAAtgg                                                                                                                                       <  1:3964009‑M1/8‑2 (MQ=255)

        ccatgttcattttcgtaaaagtgtgatagatgatggcagatgttatctctgtccgtgtctaggctatccaagacaatggcgttcagaagatatttaccaggaaataaatgagacgatacaaataatagaaattTAAAATgc                                                                                                                                       <  1:490466‑M1/8‑1 (MQ=255)

             aaaTGGAATACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATACAATGCGCaaaa                                                                                                                                 >  2:2662896/1‑140 (MQ=255)

             aaaTGGAATACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAAc                                                                                                                                 >  1:1517353/1‑141 (MQ=255)

              tcattttcgtaaaagtgtgatagatgatggcagatgttatctctgtccgtgtctaggctatccaagtcaatggcgttcagaagatatttaccaggaaataaatgagacgatacaaataatagaaattTAAAATGCGCAAAc                                                                                                                                 <  2:1122687‑M1/14‑1 (MQ=255)

              tcattttcgtaaaagtgtgatagatgatggcagatgttatctctgtccgtgtctaggctatccaacacaacggcgttcagaagatatttaccaggaaataaatgagacgatacaactactagaaattTAaaatgcgcgtac                                                                                                                                 <  2:4108785‑M1/14‑5 (MQ=255)

              tcattttcgtaaaagtgtgatagatgatggcagatgttatatctgtccgtgtctaggctatccaagacaatggcgttcagaagatatttaccaggaaacaaatgagaagatacaaataatagaaattTAAAATACGCAAAc                                                                                                                                 <  2:1562585‑M1/14‑1 (MQ=255)

              aaTGGAATACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACt                                                                                                                                <  2:192323/141‑1 (MQ=255)

               cattttcgtaaaagtgtgatggatgatggcagatgttatctctgtccgtgtctaggctatccaagacaatggcgttcagaagatatttaccaggaaataaatgaggcggtacaaataatagaaattTACACTGcgcaagcc                                                                                                                                <  1:866819‑M1/15‑4 (MQ=255)

               aTGGAATACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGGGT‑AAAACATAAAATGCGCAAACTg                                                                                                                               >  1:3731709/1‑141 (MQ=255)

                tGGAATACAGCTTTAATTCGCCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTgg                                                                                                                              <  1:4330237/141‑1 (MQ=255)

                 ggAATACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTggg                                                                                                                             >  1:3875654/1‑141 (MQ=255)

                    aTACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGAGT‑AAAACATAAAATGCGCCAACTgggacc                                                                                                                          >  2:3978619/1‑138 (MQ=255)

                     tACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAAATggcacag                                                                                                                         >  1:2502286/1‑136 (MQ=255)

                       cAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGt                                                                                                                       <  1:1336194/141‑1 (MQ=255)

                         gCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGttt                                                                                                                     <  1:2855332/141‑1 (MQ=255)

                                 tCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCAttt                                                                                                             <  2:1442220/141‑1 (MQ=255)

                                 tCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCAttt                                                                                                             <  1:2995815/141‑1 (MQ=255)

                                 tCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTAGCGTGTGT‑AAAACATAAAATGCGACAACTGAGTCAGGTTTGCGCAttt                                                                                                             >  2:376666/1‑141 (MQ=255)

                                   aCCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTa                                                                                                           <  1:3343533/141‑1 (MQ=255)

                                   aCCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTa                                                                                                           >  1:1211992/1‑141 (MQ=255)

                                   aCCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGAAAACTGGGTCAGGTTTGCGCATTGTa                                                                                                           <  2:1826987/141‑1 (MQ=255)

                                    ccAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTaa                                                                                                          >  1:2771917/1‑141 (MQ=255)

                                    ccAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTaa                                                                                                          <  2:545062/141‑1 (MQ=255)

                                        gaagaaAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAAttt                                                                                                      >  1:2969233/1‑141 (MQ=255)

                                        gaagaaAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAAttt                                                                                                      <  1:1769100/141‑1 (MQ=255)

                                         aagaaAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTc                                                                                                     <  2:3693510/141‑1 (MQ=255)

                                           gaaAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCta                                                                                                   >  1:1825630/1‑141 (MQ=255)

                                            aaaGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCtat                                                                                                  >  1:793493/1‑141 (MQ=255)

                                               gTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGAGTCAGGTTTGCGCATTTTAAATTTCtattat                                                                                               >  2:2417535/1‑141 (MQ=255)

                                                  cagttATGTGCAACCACATATATTTTCAATTGAAAATCAGCAGCAAAAGAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTg                                                                                            <  1:1652088/138‑1 (MQ=255)

                                                  cATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAAGAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTg                                                                                            <  2:1418980/141‑1 (MQ=255)

                                                    tttATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTa                                                                                          >  1:2825603/1‑141 (MQ=255)

                                                     ttATGTGCAAACACAATCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTAt                                                                                         <  2:3097366/141‑1 (MQ=255)

                                                      tATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATc                                                                                        <  1:360380/141‑1 (MQ=255)

                                                         gtgCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGtc                                                                                     >  1:3702736/1‑141 (MQ=255)

                                                         gtgCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGtc                                                                                     >  1:3774888/1‑141 (MQ=255)

                                                            cAACCACATTCATATACACTTGAAAATCAGCAACAAAATAAACACACGTAAGAAACCACATTACTCGCGTGTGT‑AAAACATAACATGCGCAAACTGGGACACGCTTGCGCCTTCCAAACATCTCTTATCTGCatcatcccc                                                                                  >  2:1286526/1‑138 (MQ=255)

                                                            cAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCa                                                                                  >  1:3266491/1‑141 (MQ=255)

                                                             aaacacaTTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCat                                                                                 <  2:4064500/138‑1 (MQ=255)

                                                             aaCCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCat                                                                                 <  1:1384682/141‑1 (MQ=255)

                                                             aaCCACACTCATATACAATTGAAAATCAGCGACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACGTAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCat                                                                                 <  2:3351458/141‑1 (MQ=255)

                                                              aCCACATTCATATACAATAGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCatt                                                                                <  2:437822/141‑1 (MQ=255)

                                                               ccACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCattt                                                                               <  1:4189389/141‑1 (MQ=255)

                                                               cagaaTTCATATGAAAGTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCattt                                                                               <  2:394224/137‑1 (MQ=255)

                                                                   aTTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCatttattt                                                                           >  2:2095392/1‑141 (MQ=255)

                                                                   aTTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCatttattt                                                                           >  2:3563375/1‑141 (MQ=255)

                                                                    ttCATATACAAGTGAAAATCAGCAACATAATAAAAACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTc                                                                          <  2:260563/141‑1 (MQ=255)

                                                                        tataCAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTgg                                                                      >  1:2444247/1‑141 (MQ=255)

                                                                              aTTGAAAATCAGCAACAAAATAAACACACGGAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAata                                                                <  1:719151/141‑1 (MQ=255)

                                                                                   aaaTCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTTCTGGTGAATAtattc                                                           >  1:4109491/1‑141 (MQ=255)

                                                                                   aaaTCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTCAATAtcttc                                                           >  2:1051959/1‑141 (MQ=255)

                                                                                    aaTCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATAtcttct                                                          >  2:735699/1‑141 (MQ=255)

                                                                                     aTCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTCTAAGCAGTTACT‑CGTAAGCTGGGTCAGTTATTCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTg                                                         <  2:2005506/141‑1 (MQ=255)

                                                                                     aTCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTATGT‑AAAACATAAAATGCCCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATGATTTGTATCGTCTCATTTATTTCCTGGTAAATAcattctt                                                         >  2:3427063/1‑140 (MQ=255)

                                                                                      tCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAGATATCTTCTGa                                                        >  1:310641/1‑141 (MQ=255)

                                                                                      tCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGa                                                        <  1:383701/141‑1 (MQ=255)

                                                                                      tCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGAAAACTGAGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAAAATCTTCTGa                                                        >  2:1728324/1‑141 (MQ=255)

                                                                                        aGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAAc                                                      >  2:2794619/1‑141 (MQ=255)

                                                                                        aGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTCCATGGTAAATATCTTCTGaaa                                                      >  2:2135984/1‑140 (MQ=255)

                                                                                          caacaaAGTGAACACACGTACGTAAGGACATGACTCGCGTGTGT‑AAAACATACAAACCGCACACTGCGGCCGCTTTGGCCGATCGAAACATCGATTAGTAAAATAATGTCATTTTTTGCCTGGTAAATATCTTCTGAACGc                                                    >  2:4251955/1‑141 (MQ=255)

                                                                                          caacaaAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGc                                                    >  1:303047/1‑141 (MQ=255)

                                                                                           aacaaAAGAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGcc                                                   <  2:3468891/141‑1 (MQ=255)

                                                                                             caaAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCAt                                                 <  1:926084/141‑1 (MQ=255)

                                                                                                 agaaaCACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTc                                             <  1:4035860/139‑1 (MQ=255)

                                                                                                 aTAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTc                                             <  1:2023815/141‑1 (MQ=255)

                                                                                                  tAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTCTTTGTATCGTCTCATTTATTTCCTGGTACCTATCTTCTGAACGCCATTGTCt                                            <  1:4416450/141‑1 (MQ=255)

                                                                                                  tAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCt                                            <  2:793493/141‑1 (MQ=255)

                                                                                                  tAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCt                                            <  1:1103825/141‑1 (MQ=255)

                                                                                                    aaCACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTg                                          >  1:319858/1‑141 (MQ=255)

                                                                                                    aaCACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTg                                          <  1:6171/141‑1 (MQ=255)

                                                                                                     acacacGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTga                                         >  2:2544544/1‑140 (MQ=255)

                                                                                                      cacacGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGa                                        <  1:3994958/141‑1 (MQ=255)

                                                                                                            taagtaaACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCt                                  <  2:1380052/141‑1 (MQ=255)

                                                                                                             aagtaaACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTa                                 <  1:1988780/141‑1 (MQ=255)

                                                                                                             aagtaaACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTa                                 >  2:3242928/1‑141 (MQ=255)

                                                                                                                   acacATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACg                           <  1:4260732/141‑1 (MQ=255)

                                                                                                                           cTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAgaga                   >  1:3500051/1‑141 (MQ=255)

                                                                                                                            tCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATCGCCCCGACACGTACagagct                  >  1:1433300/1‑139 (MQ=255)

                                                                                                                             ggcgTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATa                 <  2:2462855/140‑1 (MQ=255)

                                                                                                                              gcgTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATaa                >  1:2233887/1‑141 (MQ=255)

                                                                                                                              gcgTGTGT‑AAAACATAAAATGCGCAAACTGGATCAGGTTTGCGCATGTTAAATTTCTATTATTTGTCTCGTCTCATTTATTTCCTGGTTAATATCTTCTGCACGCCATTGTTTTGCATTGCCTACACTCGCACAGAGAtca                >  2:2194422/1‑139 (MQ=255)

                                                                                                                                gtgtgt‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACa              <  2:2337394/141‑1 (MQ=255)

                                                                                                                                 tgtgt‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATATTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATATTCTGAACGCCATTGTCTTAGATAGACTAGACACGGCATAAGATAACAt             >  2:4197877/1‑141 (MQ=255)

                                                                                                                                  gtgt‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATc            <  1:2662705/141‑1 (MQ=255)

                                                                                                                                  gtgt‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCACGCCAAATTGCGATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATc            <  1:1882787/141‑1 (MQ=255)

                                                                                                                                   tgt‑AAAACATACAATGCTCAGATTGGGTTATGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACTCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCt           <  2:3731709/141‑1 (MQ=255)

                                                                                                                                   tgt‑AAAACATAAAATGCGCAAACTGGGTTAGGTTTGCGCATTTTAAATTTATCTACACTATGGCTTCCCCTTTATGTATTGTCAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCt           <  2:4290267/141‑1 (MQ=255)

                                                                                                                                   tgt‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCt           >  1:3399296/1‑141 (MQ=255)

                                                                                                                                   tgt‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCt           <  2:2969233/141‑1 (MQ=255)

                                                                                                                                   tgt‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCt           <  1:2137923/141‑1 (MQ=255)

                                                                                                                                   tat‑AAAAGATAAAATGCGCAAAGTGGGTCAGTTTTGCGTATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCGTGGATAGCATAGCCTTTGACAGAGATAACATCt           <  2:1614278/139‑1 (MQ=255)

                                                                                                                                          aCATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTCTTTTTTTGGTCATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCcatc     >  1:4376787/1‑141 (MQ=255)

                                                                                                                                           cATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCcatca    <  1:2358118/141‑1 (MQ=255)

                                                                                                                                           cATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCcatca    >  1:1581410/1‑141 (MQ=255)

ATTCGTAAAGAGAAAATGGAATACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGT‑AAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATC  >  USA300TCH1516_ALE/2561061‑2561341

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.