BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	895785 =	318 (0.870)	29 (0.090)	23/226	NT	9.5%	coding (806/822 nt)	metQ_2	Methionine‑binding lipoprotein MetQ
*	?	USA300TCH1516_ALE	= 909740	276 (0.870)	29 (0.090)	23/226	NT	9.5%	intergenic (‑663/‑371)	USA300HOU_RS04500/csbD_1	hypothetical protein/Stress response protein CsbD

Only 100 of 427 total aligned reads displayed.

AAGTGCGAAAGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATA  >  USA300TCH1516_ALE/895645‑895925

 gttgttttcaagggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaatt                                                                                                                                             <  1:717566‑M1/2‑1 (MQ=255)

 aGTGCGAAAGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGtt                                                                                                                                             <  2:1412548/141‑1 (MQ=255)

  gTGCGAAAGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTa                                                                                                                                            >  2:1857946/1‑141 (MQ=255)

   tGCGAAAGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTAt                                                                                                                                           >  2:2322389/1‑141 (MQ=255)

     agAAAGATAATCCTAATGTAAACTTAAATGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAACTATAATGTTGCAGTTATTc                                                                                                                                         <  2:4099577/140‑1 (MQ=255)

       ttcaagggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCt                                                                                                                                       <  1:3544986‑M1/8‑1 (MQ=255)

          gagggcaaaaaaagggcattattgtgtgagaaagggcaagggtatgaataataaattatcttgaacattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCt                                                                                                                                    >  2:4253938‑M1/131‑141 (MQ=255)

           agggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaatcctaaatgatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTa                                                                                                                                   <  1:1701301‑M1/12‑1 (MQ=255)

           agggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctcaTTATTCCTGCTa                                                                                                                                   <  2:4303823‑M1/12‑1 (MQ=255)

           agggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTa                                                                                                                                   <  1:1792097‑M1/12‑1 (MQ=255)

           aggacaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgagaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTa                                                                                                                                   >  2:2672296‑M1/130‑141 (MQ=255)

           aTAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTa                                                                                                                                   <  2:540350/141‑1 (MQ=255)

               tCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAaata                                                                                                                               >  1:2364041/1‑141 (MQ=255)

               tCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAaata                                                                                                                               >  1:985832/1‑141 (MQ=255)

                tcTTATGGAAACTTAATTGCTGTTAAAGAAGGAAATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAaataa                                                                                                                              <  2:1642505/140‑1 (MQ=255)

                  ttATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAACATCAACGCAATAAGTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAataata                                                                                                                            >  1:635074/1‑141 (MQ=255)

                  ttATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAataata                                                                                                                            <  1:3819827/141‑1 (MQ=255)

                  aaaaagggcagaattttgaaaaaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAataata                                                                                                                            >  2:402360‑M1/123‑141 (MQ=255)

                   tATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATAc                                                                                                                           >  1:3576265/1‑141 (MQ=255)

                           cTTAATTTCTGTAAAAGAAAGACAGCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATtaaa                                                                                                                   <  1:1606668/141‑1 (MQ=255)

                            ttAATTGCTGTTAAAAAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATtaaat                                                                                                                  <  2:848333/141‑1 (MQ=255)

                             tAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATtaaata                                                                                                                 <  2:2199811/141‑1 (MQ=255)

                             tAAATGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATtaaata                                                                                                                 <  2:1511780/141‑1 (MQ=255)

                             aattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATtaaata                                                                                                                 >  1:1498963‑M1/112‑141 (MQ=255)

                              aaTTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCACTtaaataa                                                                                                                >  1:2860380/1‑141 (MQ=255)

                              aaTTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATtaaataa                                                                                                                >  1:3282609/1‑141 (MQ=255)

                               aTTGCTGTTAAAGAAGGACATTAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATtaaataaa                                                                                                               <  2:3062813/141‑1 (MQ=255)

                               aTTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTACATATATTACGGCCATCACGTATTAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATCCAAATtaaataaa                                                                                                               >  2:2004454/1‑141 (MQ=255)

                                ttGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATaaaa                                                                                                              <  1:1369760/141‑1 (MQ=255)

                                 tGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATaaaaa                                                                                                             >  2:1818102/1‑141 (MQ=255)

                                   cTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATACAAATa                                                                                                           >  1:2613675/1‑141 (MQ=255)

                                   cTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATa                                                                                                           >  1:1632384/1‑141 (MQ=255)

                                     gTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATAcc                                                                                                         <  1:143093/141‑1 (MQ=255)

                                        aaaGAAGGACATCAAGATGATAAGAAAATCAAAGGATTTGTTGAAGTAGGACAATATACACAAACAGAAGTCGTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCtt                                                                                                      >  1:2099903/1‑141 (MQ=255)

                                        aaaGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCtt                                                                                                      <  1:2569863/141‑1 (MQ=255)

                                        aaaGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCtt                                                                                                      <  1:1450679/141‑1 (MQ=255)

                                            aagGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTtaat                                                                                                  <  1:1834078/141‑1 (MQ=255)

                                             agGACATCAAGATGATAAGAAACTCAAAGCATTAATTCAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCGGTTATTCCTGCTAAATAATACCAATTAAATAAAAATCCTCTTtaata                                                                                                 >  1:930551/1‑141 (MQ=255)

                                             agGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTtaata                                                                                                 <  1:2661160/141‑1 (MQ=255)

                                             agGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTtaata                                                                                                 >  1:253556/1‑141 (MQ=255)

                                             agGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTtaata                                                                                                 <  1:4045866/141‑1 (MQ=255)

                                             agGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTtaata                                                                                                 <  1:3118664/141‑1 (MQ=255)

                                                  aTCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATaacaac                                                                                            >  1:3482810/1‑141 (MQ=255)

                                                  aTCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATAACCTCTAATaacaac                                                                                            >  2:3785758/1‑141 (MQ=255)

                                                    tatgaataataaattatcttgaaaattttataaatgcatatataacaatgatttgattgcccttgaacttccttgataatctgtctaaTTATTCCTCCCAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGa                                                                                          <  2:3962419‑M1/53‑1 (MQ=255)

                                                      aGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGAtt                                                                                        >  1:76342/1‑141 (MQ=255)

                                                          gatAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAgg                                                                                    >  1:303775/1‑141 (MQ=255)

                                                             aaGAAAATCGAAACACTGATTGAAGTAGTACAAGCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGt                                                                                 <  2:1619555/141‑1 (MQ=255)

                                                              aGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGttt                                                                                >  2:2599189/1‑141 (MQ=255)

                                                              aGAAAATAAAAGGATTAATAGAAGTAATACAATCAAAAGATATTCAAGACTTCATTAATGAAAAAGACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGtt                                                                                <  2:3235573/141‑1 (MQ=255)

                                                                aaaaTCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTAt                                                                              <  1:3363954/141‑1 (MQ=255)

                                                                   aTCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTACTAACAACGATTAAAGGGTTAtttt                                                                           >  2:193716/1‑141 (MQ=255)

                                                                   aTCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAAAGGTGCGTTTATTCATGTTTAATAATACCAATTAAATAAAAATACACTTTAATAACAACGATTAAGGGGTTAtttt                                                                           >  1:1898717/1‑141 (MQ=255)

                                                                     cAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTtg                                                                         >  1:396243/1‑141 (MQ=255)

                                                                      aaaGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACTAATTAAATAAAAATACCCTTTAATAACAACGATTAAAGGGTTATATTtgt                                                                        >  2:452888/1‑141 (MQ=255)

                                                                      aaaGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTCAGGGGTGATTTTtgt                                                                        >  1:1193138/1‑141 (MQ=255)

                                                                        aGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAATGGGTTATTTTtgtgt                                                                      >  2:3723382/1‑140 (MQ=255)

                                                                         acATTAAATGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGt                                                                     <  2:1761419/140‑1 (MQ=255)

                                                                         aaaTTAATTGAAGTATTACAAGCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATATAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGt                                                                     <  2:2105204/139‑1 (MQ=255)

                                                                                ttGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATCTTTGTGCTATTGaaa                                                              >  2:3157651/1‑141 (MQ=255)

                                                                                 tGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGaaaa                                                             <  2:4383518/141‑1 (MQ=255)

                                                                                 tGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGaaaa                                                             <  1:2746468/141‑1 (MQ=255)

                                                                                 tGAAGTATTAAAATATAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGaaaa                                                             <  2:2180704/141‑1 (MQ=255)

                                                                                   aaGTATTACAATCTAAAGATATTAAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAATAATATCCTTTAATAACAACTATTAAGGGGTTATTTTTGTGGTATTGAAAATa                                                           <  2:578297/141‑1 (MQ=255)

                                                                                     gTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATaaa                                                         <  2:3388289/141‑1 (MQ=255)

                                                                                       aTTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATaaaaa                                                       >  1:4107465/1‑141 (MQ=255)

                                                                                          aCAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATaaaaaggg                                                    <  1:2043447/141‑4 (MQ=255)

                                                                                           cAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATACAAAAggg                                                   >  2:2847617/1‑141 (MQ=255)

                                                                                           cAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAggg                                                   <  1:2322389/141‑1 (MQ=255)

                                                                                           cAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAggg                                                   <  1:2194904/141‑1 (MQ=255)

                                                                                              tCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGAGcac                                                >  1:4388366/1‑141 (MQ=255)

                                                                                               cgaaggATAATGAAGACTTAAATAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGcaca                                               <  2:333831/136‑1 (MQ=255)

                                                                                               cTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGcaca                                               <  1:2717434/141‑1 (MQ=255)

                                                                                               aacaatgtttttattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGcaca                                               >  1:1265878‑M1/46‑141 (MQ=255)

                                                                                                aaaaGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACaa                                              <  2:358396/140‑1 (MQ=255)

                                                                                                  aatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACATCGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACaaaa                                            >  2:2795707‑M1/43‑141 (MQ=255)

                                                                                                  aatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACaaaa                                            >  1:402203‑M1/43‑141 (MQ=255)

                                                                                                  aaGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACaaaa                                            <  2:1118601/141‑1 (MQ=255)

                                                                                                  aaGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACaaaa                                            <  1:1973577/141‑1 (MQ=255)

                                                                                                  aaGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACaaaa                                            <  1:3895734/141‑1 (MQ=255)

                                                                                                  aaGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCATGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACaaaa                                            <  2:1206497/141‑1 (MQ=255)

                                                                                                    gATATTCAAGACTTCATTAATGAAAAATACAAGGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAgg                                          <  1:1553614/141‑1 (MQ=255)

                                                                                                          cAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGt                                    >  1:4228249/1‑141 (MQ=255)

                                                                                                             gACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGtata                                 >  2:1879506/1‑141 (MQ=255)

                                                                                                                    gaagttccatgataatctggctaaTTATTTCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAAt                          >  2:2371436‑M1/25‑141 (MQ=255)

                                                                                                                      aaTGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTa                        <  2:1055438/141‑1 (MQ=255)

                                                                                                                        tGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATc                      <  1:3728970/141‑1 (MQ=255)

                                                                                                                         gAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATca                     >  2:352893/1‑140 (MQ=255)

                                                                                                                         gAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGACACAAAAGGGGCATTATATGCAAATTATca                     >  2:676148/1‑140 (MQ=255)

                                                                                                                         aaaaaaaACAATGATGCAGTTAATCCTGATAAAAAATACCAATTAAATAAAAATACCCTTTAATAACAACGATAAAGGGGTTATTTTTGTGGTATTGAAAATAAAACAGGGCACAAAAGGCGCAGTATATGCAAATTATCg                     <  2:2702238/140‑1 (MQ=255)

                                                                                                                            aaaTACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAAt                  >  1:1015672/1‑141 (MQ=255)

                                                                                                                            aaaTACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACACTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAAGGGCAGTATATGCAAATTATCGAAt                  >  1:546631/1‑141 (MQ=255)

                                                                                                                              aTACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATAGAAttt                >  1:1740276/1‑141 (MQ=255)

                                                                                                                                 cAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGCAttttga             >  1:3167558/1‑139 (MQ=255)

                                                                                                                                  aaTGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTaaa            <  1:227997/141‑1 (MQ=255)

                                                                                                                                   aTGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGGTTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAAc           >  2:742833/1‑141 (MQ=255)

                                                                                                                                    tGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTATAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACa          <  1:516596/141‑1 (MQ=255)

                                                                                                                                        gCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACaaaaa      >  1:87432/1‑141 (MQ=255)

                                                                                                                                         cAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACaaaaaa     >  1:1069819/1‑141 (MQ=255)

                                                                                                                                            TTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATa  >  2:2480530‑M1/1‑141 (MQ=255)

AAGTGCGAAAGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATA  >  USA300TCH1516_ALE/895645‑895925

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.