BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2085296 =	302 (0.830)	25 (0.080)	20/232	NT	8.2%	coding (173/201 nt)	hlb_1	Phospholipase C
*	?	USA300TCH1516_ALE	= 2128343	294 (0.900)	25 (0.080)	20/232	NT	8.2%	coding (1/825 nt)	hlb_2	Phospholipase C

Only 100 of 422 total aligned reads displayed.

AAAAAAAGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACTTTAA  >  USA300TCH1516_ALE/2085156‑2085436

ctacatccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacatctaaaattttagaaagtatgtagtttaggaacccattagggactccaaacacaataaatactgttgttacaaggtttctat                                                                                                                                              <  2:2924049‑M1/1‑1 (MQ=255)

ctacatccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgctgttacaaggtttctat                                                                                                                                              <  1:2612692‑M1/1‑1 (MQ=255)

ctacatccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccatcagggactccacacccaataaatactgttgttccaaggtttctat                                                                                                                                              <  2:3728840‑M1/1‑1 (MQ=255)

agaaaaaGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGtttt                                                                                                                                              <  2:659732/139‑1 (MQ=255)

 aaaaaaGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTg                                                                                                                                             >  2:452365/1‑141 (MQ=255)

  acatccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaacttttagaaagtatgtaatttagaggcccattagggactccaaacccaataaatactgttgttacaaggtttctaTGt                                                                                                                                            <  1:1676656‑M1/3‑1 (MQ=255)

  acatccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGt                                                                                                                                            <  2:1756289‑M1/3‑1 (MQ=255)

  acatccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagaatataatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGt                                                                                                                                            <  2:1348422‑M1/3‑1 (MQ=255)

   catccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTa                                                                                                                                           >  1:3497650‑M1/138‑141 (MQ=255)

    aaaGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTAt                                                                                                                                          <  1:362428/141‑1 (MQ=255)

     acagtgtattatcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATc                                                                                                                                         >  2:3158588‑M1/136‑141 (MQ=255)

      aGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATcc                                                                                                                                        <  2:2094726/141‑1 (MQ=255)

      aGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATca                                                                                                                                        >  1:2217787/1‑140 (MQ=255)

        gtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaacaaccctcatgatctagaaaccatgtaatttaggtacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCaa                                                                                                                                      >  1:842614‑M1/133‑141 (MQ=255)

        gtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCaa                                                                                                                                      <  1:3154515‑M1/9‑1 (MQ=255)

           tattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACt                                                                                                                                   >  1:2974981‑M1/130‑141 (MQ=255)

             acacTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTgg                                                                                                                                 <  1:3994349/141‑1 (MQ=255)

              cgcTTGCATTAGCAAATGTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGga                                                                                                                                <  1:1940752/139‑1 (MQ=255)

                 ttGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGAc                                                                                                                             >  2:866871/1‑141 (MQ=255)

                 catttgttagaagaaaaatttaatgaagaggacaaaaaaacaactcaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTATATCCAAACtggaggc                                                                                                                             <  2:3972583‑M1/18‑3 (MQ=255)

                     aTTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGCACAAAAGTCGATATGGTTATATGTTATCTATGGTTTGGTATCCAAACTGGAGACtttt                                                                                                                         >  1:1008549/1‑141 (MQ=255)

                        aGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAAc                                                                                                                      >  2:1055280/1‑141 (MQ=255)

                          cAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACAt                                                                                                                    <  1:1165021/141‑1 (MQ=255)

                          cAAATTTATTATTAGTTGGTGCAATTAATGACAATAGTGCAAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACAt                                                                                                                    <  2:2788210/141‑1 (MQ=255)

                          aaaaTTTATTATTAGTTGGTGCACTTACTGACAAGAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTAGAGACTTTTAACAt                                                                                                                    <  2:3302507/140‑1 (MQ=255)

                           aaaTTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATa                                                                                                                   <  2:3679040/141‑1 (MQ=255)

                           aaaTTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATa                                                                                                                   <  1:2271323/141‑1 (MQ=255)

                               ttattattaGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAAt                                                                                                               <  2:3224712/141‑1 (MQ=255)

                                  ttattaGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTAc                                                                                                            >  1:2842904/1‑141 (MQ=255)

                                  ttattaGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTAc                                                                                                            >  1:2381103/1‑141 (MQ=255)

                                   tattaGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGCTTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCTACCGCTTTGTATCCAAAATGGAGAGTTTTTAAATAGCATTACt                                                                                                           >  2:1550077/1‑141 (MQ=255)

                                            gTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCa                                                                                                  >  1:4264185/1‑141 (MQ=255)

                                             tGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCaa                                                                                                 <  1:2703559/141‑1 (MQ=255)

                                             acgacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCaa                                                                                                 >  1:2124293‑M1/96‑141 (MQ=255)

                                                 cTTACTGACAATAGTATCAAGTCTTAGTCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAg                                                                                             >  2:1614824/1‑141 (MQ=255)

                                                  ttACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGt                                                                                            <  1:1742562/141‑1 (MQ=255)

                                                   tACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAgca                                                                                           <  2:4340612/141‑3 (MQ=255)

                                                     cTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGCAGACTTTTAACATAACATTACTTATCATTCAAAAAGTaaa                                                                                         >  2:1516274/1‑141 (MQ=255)

                                                     cTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGGTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACCTAAAATTACTTATCATTAGACAAGTaaa                                                                                         >  2:61964/1‑141 (MQ=255)

                                                       gACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAAc                                                                                       <  2:2340501/141‑1 (MQ=255)

                                                       gACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGATCGTTAGTCGTAACGTTTATATGTTATCGAACGTTTTGTATCCAAACTCGAGACTTTTAACATAAAATTACTTATCCTTCAAAAAATAAAAc                                                                                       >  2:4073519/1‑141 (MQ=255)

                                                        acaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACa                                                                                      <  2:2506964‑M1/57‑1 (MQ=255)

                                                        aCAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACa                                                                                      <  1:2859005/141‑1 (MQ=255)

                                                             aGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCata                                                                                 <  2:3808494/141‑1 (MQ=255)

                                                              gTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCataa                                                                                <  1:3744285/141‑1 (MQ=255)

                                                              gTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAAAATAAAATTACTTATCATTCAAAAAGTAAAACAACataa                                                                                >  2:3647725/1‑141 (MQ=255)

                                                              gTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAATCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCACAAAATAAAACAGCataa                                                                                >  2:1298905/1‑141 (MQ=255)

                                                               tGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCataat                                                                               <  1:883732/141‑1 (MQ=255)

                                                               tGCCAAAGCAGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCataat                                                                               <  2:581984/141‑1 (MQ=255)

                                                                gCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCataata                                                                              <  2:3518951/141‑1 (MQ=255)

                                                                gCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCataata                                                                              <  2:179394/141‑1 (MQ=255)

                                                                 ccAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTCTTTCCCCACTGGCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAatat                                                                             <  1:3227830/141‑1 (MQ=255)

                                                                 ccAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAatat                                                                             >  2:2584461/1‑141 (MQ=255)

                                                                       ccGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATTCAAACTGGCGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGt                                                                       >  2:283891/1‑141 (MQ=255)

                                                                       ccGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGt                                                                       >  1:2072969/1‑141 (MQ=255)

                                                                       ccGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGt                                                                       >  1:1874847/1‑141 (MQ=255)

                                                                       ccGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGt                                                                       >  1:4205811/1‑141 (MQ=255)

                                                                       ccGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGt                                                                       >  1:339035/1‑141 (MQ=255)

                                                                        cGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGtt                                                                      <  1:3573898/141‑1 (MQ=255)

                                                                        cGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGtt                                                                      <  1:252391/141‑1 (MQ=255)

                                                                        cGAATCTAACAAAGATGATACTGATTTGAAGGTAGTTAGTCATAACTTTTATATGTTATCGAGCGTTTTTTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGtt                                                                      <  1:1999149/141‑1 (MQ=255)

                                                                           agcTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTtat                                                                   <  2:1848123/139‑1 (MQ=255)

                                                                            tCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTtata                                                                  >  1:626601/1‑141 (MQ=255)

                                                                                    ttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatc                                                          >  1:242507‑M1/57‑141 (MQ=255)

                                                                                    agaTGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatc                                                          <  2:413817/141‑1 (MQ=255)

                                                                                      atgatACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcat                                                        <  1:512349/141‑1 (MQ=255)

                                                                                       tgatACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAACATCCAAACTTCTAATATAAAACGACCCATCATTCAAAAAGTAAAATAGCCTAATATCAAGGTTTATAACTttatcatt                                                       >  2:4288913/1‑141 (MQ=255)

                                                                                         atACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcattat                                                     >  2:1998906/1‑141 (MQ=255)

                                                                                         atACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcattat                                                     >  2:2283359/1‑141 (MQ=255)

                                                                                          tACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGCTTTTTGTCTTATAATTTATTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcattata                                                    >  2:2170113/1‑140 (MQ=255)

                                                                                             tGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaat                                                 <  2:530692/141‑1 (MQ=255)

                                                                                             tGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaat                                                 >  1:1524468/1‑141 (MQ=255)

                                                                                              gATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTCCTTATCATTCAAACAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaata                                                >  2:4399240/1‑141 (MQ=255)

                                                                                                 ttGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCCataata                                             >  2:3474404/1‑141 (MQ=255)

                                                                                                 ttGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAataata                                             >  1:1446181/1‑141 (MQ=255)

                                                                                                    aaGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCt                                          <  2:2985926/141‑1 (MQ=255)

                                                                                                      gttagttaGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCa                                        >  1:44524/1‑141 (MQ=255)

                                                                                                        tagttagtCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCata                                      <  1:3774445/141‑1 (MQ=255)

                                                                                                         agttagtCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCatat                                     >  1:2895994/1‑141 (MQ=255)

                                                                                                              gtCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATataaaat                                <  2:74227/141‑1 (MQ=255)

                                                                                                               tCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATataaaata                               <  1:3856336/141‑1 (MQ=255)

                                                                                                               tCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACGTATCATTGAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATataaaata                               <  2:391814/141‑1 (MQ=255)

                                                                                                                    aCGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATCCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAtt                          >  2:1430112/1‑141 (MQ=255)

                                                                                                                       tttATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATCAAATAAAAtttta                       >  2:1166836/1‑141 (MQ=255)

                                                                                                                        ttATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttag                      >  1:2795862/1‑141 (MQ=255)

                                                                                                                               ttATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggacttt               >  2:4002638/1‑141 (MQ=255)

                                                                                                                                  tCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTGATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggacttttta            <  1:1209586/141‑1 (MQ=255)

                                                                                                                                    ggttcctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttagg          >  2:2422810‑M1/9‑141 (MQ=255)

                                                                                                                                    gACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttagg          <  1:1055280/141‑1 (MQ=255)

                                                                                                                                     aCCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttaggg         >  1:1293875/1‑141 (MQ=255)

                                                                                                                                     aCCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttaggg         <  1:3340487/141‑1 (MQ=255)

                                                                                                                                      tttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttaggagctttttaggga        <  1:756655‑M1/135‑1 (MQ=255)

                                                                                                                                      ccGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAATACAGCATAATATCAAGGTTTATTCATTTACAGTTCTCAAAAATACATTATATTAAAGAAAAttttagggactttttaggga        >  1:4353476/1‑141 (MQ=255)

                                                                                                                                      ccGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttaggga        >  1:1828845/1‑141 (MQ=255)

                                                                                                                                      ccGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttaggga        >  1:1595652/1‑141 (MQ=255)

                                                                                                                                        gTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttgaagact      >  1:3191735/1‑134 (MQ=255)

                                                                                                                                         ttttGTATCCAAAATGGAGACTTTTAACATAAAATTACTTATAATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATtttagggactttttagggactt     <  2:2726810/141‑1 (MQ=255)

                                                                                                                                          tttGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTttagggactttttagggacttt    >  2:3555737/1‑141 (MQ=255)

                                                                                                                                            TGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGTTACTTTTTAGGGACtttaa  <  2:3005129‑M1/141‑1 (MQ=255)

                                                                                                                                            TGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACtttaa  >  1:2163915‑M1/1‑141 (MQ=255)

AAAAAAAGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACTTTAA  >  USA300TCH1516_ALE/2085156‑2085436

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.